Scos034955.1
Basic Information
- Insect
- Scrobipalpa costella
- Gene Symbol
- -
- Assembly
- GCA_949820665.1
- Location
- OX463317.1:15877564-15879281[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.016 62 5.3 0.0 48 86 103 140 95 141 0.85 2 4 0.025 1e+02 4.7 0.1 51 84 200 232 168 235 0.77 3 4 0.0011 4.5 9.0 0.1 48 83 288 322 265 324 0.83 4 4 0.0023 9.1 8.0 0.0 51 83 392 423 377 426 0.81
Sequence Information
- Coding Sequence
- ATGGAAAGCAGCAATCCGCACAACCAAGGTTACTGGTTTGTGTTGCGGGAAGACCAGGGCAATGTGATCTTCAGCAGCAATAACATTGCTGCCATACAGAATCCACACATACCACCAGAACCAGAGCAGCAACGGTATTTAATCGAAGCCACCACCAGACACCTCCCTCTACCCCCCGACCCCCCGCCTGTGGAGGACCACTCACAAACCAGTGACAAAACTGCTGACAAGTGGCAGAAACCCAAGGAAGAGTTCTGGGACAGGCACAAGATTAAACTACTCCTTACACTTTGCCTTGAGAACAAGAATGTGGAGAAGGCAGCTCTTTGGGAGGAAATAAGCAGCATAGTCGGGGCCACTCCTGAGGAATGCAACATCAAGTACACCAATTTAAGGAGAACTTATCTCAGACttctaaagaaaaagaaattgggTAAGGATATCAAATGGGTTCATTATGATATTTGTGAAGAAGTCTTCACAGATCTGAGAGCATTGCCTCCTTCAGTATTGCAGCCTTGGGATGACAACAAAATTAAGAGACTACTCAATCTGTACATAGAGTACCTGCCCAGGTTCCGTAACCCCAATTGCTTACAGAAAGATCTTTGGAAAGAAATAGCTGCTCAGCTGGCAACCACAGGATACAACTGCTACCACAAGTTCAAGAATTTAAGAAGAACTTATTTAAACTGGTATAATCAACGCTGTGAAACAAGAAAAACAAAGCAATGGATGTACCATCAATACTTTGAAAGAATTTATTACAATTACAATCCTGCAACGAGAGCTTGGGACAGACACAAGGTTAAACAACTGTTAGATGCATATGCACAAATAGCACACAAGTTTAGAAATCCAAAATTGCAAAAGAAAGAACTGTGGAAAGAAATTGCAAGGAAAGTTGGAGCAAGTCCAGATGCTTGCGACAAGAAGTTTAGAAACTTAAAACAGACTTATGTGagattaaaagtaaaaacaagCTGTGGGCGTCCACCTACCAGGTGGAGATATTACAGAATCTTTGAAGAAATCTACAACAGCTCTGCAAGATACTTAGAAATAAATGGATCACACAGATTAGTTTATCCATCAGAGGAAGAAAATTACATTAAGCATCTTCTGGACTTCTATATAGTGCACAAACACAAATTCAAAGATCCTCttacaaagaataaaaatatatggagAATGATTGCTCCACAGTTAGGATTGTCCCCAGAAGAATGTGATAAAAAGTTTAGAAATCTCAAACAAACTTACGTGAGGCTGGCTTGGAAGAGAAAGCATACTGGGAAATGCAGCAAATGGCCATATTTCTCTTACTTTGATCAGATCTATGACAGTGATGAGAGTGCTGACCTCTGCAGCAGGACCAACGAGGTACCCGGGGACCCGGAGCCGGGACTGGGTGAGACACTACGAGAGATGCATCAAAGAAGAGACTCTCATCGCAGATTCGAACTTCTTGCACGTCTCGCTGAAGAATCTAATCAAATTCAGAGGGATAGGAACAAAATACTGCTGGCGCTactaaatagaaaataa
- Protein Sequence
- MESSNPHNQGYWFVLREDQGNVIFSSNNIAAIQNPHIPPEPEQQRYLIEATTRHLPLPPDPPPVEDHSQTSDKTADKWQKPKEEFWDRHKIKLLLTLCLENKNVEKAALWEEISSIVGATPEECNIKYTNLRRTYLRLLKKKKLGKDIKWVHYDICEEVFTDLRALPPSVLQPWDDNKIKRLLNLYIEYLPRFRNPNCLQKDLWKEIAAQLATTGYNCYHKFKNLRRTYLNWYNQRCETRKTKQWMYHQYFERIYYNYNPATRAWDRHKVKQLLDAYAQIAHKFRNPKLQKKELWKEIARKVGASPDACDKKFRNLKQTYVRLKVKTSCGRPPTRWRYYRIFEEIYNSSARYLEINGSHRLVYPSEEENYIKHLLDFYIVHKHKFKDPLTKNKNIWRMIAPQLGLSPEECDKKFRNLKQTYVRLAWKRKHTGKCSKWPYFSYFDQIYDSDESADLCSRTNEVPGDPEPGLGETLREMHQRRDSHRRFELLARLAEESNQIQRDRNKILLALLNRK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01500886;
- 90% Identity
- -
- 80% Identity
- -