Scos028347.2
Basic Information
- Insect
- Scrobipalpa costella
- Gene Symbol
- retn
- Assembly
- GCA_949820665.1
- Location
- OX463312.1:5121364-5133557[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.1e-19 4.3e-16 60.3 0.0 17 89 25 95 16 95 0.94 2 2 4.9 2e+04 -2.7 0.0 25 38 227 240 188 241 0.57
Sequence Information
- Coding Sequence
- aTGGAAATAGCGCGCGCGGCGCTCCACTCAGGCGCATCGAATCGCGCGTTTTCCGCCGCAGGGCGGGGAGGCGGCACGCCGATCAACCGACTGCCGATAATGGCCAAGTCCGTGTTGGACCTGTACGAGCTGTACAACCTGGTGATTGCCAGGGGAGGGCTGGTGGAGGTCATCAACAAGAAGCTCTGGCAGGAGATCATCAAGGGACTGAGGCTGCCGTCGTCCATCACTTCAGCGGCGTTCACGCTCCGGACGCAATACATGAAATACTTGTATGATTACGAGTGTGAGAAGAAAAACCTATCTACCCGGAGCGAGCTGGACGCCGCCATTGAAGGCAACAAGCGCGAGGGACGCCGCGCCTCGGGACAGTACGATGCGCAAGCGGCTTTAGCCATGCCACCGCTGAGCCGGGTGCCAGCGTCCCTGGCCCAGCTCTCTCAGCACATGCAGCCCCTGTCCCTATCTCTTGGGGGCGGAGTAGCTGGTGTTCCACGTCTGCCGCCATTGCCGCCTCATGCGCCGCACCTGTCGCAGCATGACCTTGAGTATCGTGTGAGGGAGTACATGAAGATGATTCAGCAGCAACGCGAGCTTATGAGGAATGGCTCGGAATCCCCACCCAGTGCCAACGGCCCGACCCCAATGATGTCTCCTCGTGACGCGGCCGCCCTCAGTGCCATTGACGTATCGCGGCTGACGCTCTGGTCTCTTTACAACAATAATAACAACAGCCCACAGCCTGATCTAGAGCCTCAACGGGAGGCTTTGAACCTCAGCGAGAGCCCTAACTCGAGCGTCAGCGGCAAGCGCGAGGCGTGCCGCTCTCCCCCCCCTCCCGCGAAGAggcgcaccccgcgccccgcgTCCCCCCGCGCCGCGTCGCCCCCGCGCCCCTCCTCGCTCCCCGCGCACACCCAGCCGCAGGTCAATGGCGGGAGCAATGGGGTGAACGGGGCTGCGTTCAAGATCACTACCAGAGGAGACGCGACCACAGGCGACCAACAGCTGGTGGTCTCAATAGAACTCAACGGAGTGACGTACGAGGGAGTTCTGTTCCCTTCCAACGCGAGCGGACAGAACGGACACAGACAGATGGTCTCTTAA
- Protein Sequence
- MEIARAALHSGASNRAFSAAGRGGGTPINRLPIMAKSVLDLYELYNLVIARGGLVEVINKKLWQEIIKGLRLPSSITSAAFTLRTQYMKYLYDYECEKKNLSTRSELDAAIEGNKREGRRASGQYDAQAALAMPPLSRVPASLAQLSQHMQPLSLSLGGGVAGVPRLPPLPPHAPHLSQHDLEYRVREYMKMIQQQRELMRNGSESPPSANGPTPMMSPRDAAALSAIDVSRLTLWSLYNNNNNSPQPDLEPQREALNLSESPNSSVSGKREACRSPPPPAKRRTPRPASPRAASPPRPSSLPAHTQPQVNGGSNGVNGAAFKITTRGDATTGDQQLVVSIELNGVTYEGVLFPSNASGQNGHRQMVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00150269;
- 90% Identity
- iTF_00654018;
- 80% Identity
- -