Sbip015289.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Scotopteryx bipunctaria
Gene Symbol
sip1
Assembly
GCA_949320045.1
Location
OX439459.1:3322558-3331595[-]

Transcription Factor Domain

TF Family
GCFC
Domain
GCFC domain
PFAM
PF07842
TF Group
Unclassified Structure
Description
This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 1.3e-61 1.5e-57 195.7 5.0 4 275 372 626 369 626 0.96
2 2 0.75 8.6e+03 -3.6 0.0 78 102 643 669 632 681 0.45

Sequence Information

Coding Sequence
ATGTCGGACGACGAGGTTATTCGCTTTGAAATCACCGACCATGATTTGGATAAcgaattcaatttcaataggCCCCGAGGGAAAAACAAGAAGGAACATCAGATATACGGCATGTGGGCTAAAGACAGTGATGAAGAAGACAATGAGGATAACATTCGCCAGAGGACCCGTAAGCAGAAAGACTACTCAGCTCCTATTGGCTTTGTGATGGGAGGAGTGCAACAGGCTGGCaagaaaaaagaagaaaagaaaGTTTCAGAGCTAGAATCAGCAGAACCTTCCACCTCTCGCCCCAAGTTTGCCCCAGACAGTTCTGATGAAGAGCAGCCTACCTTACCTGCAGAGAGTGAGACAGCGGGCATCAGGAAAAAGGGACAGGGAATGCGAACGGCCAGCCTCGGCAGCAATGTTGGGAACTGGGAGAAGCATACTAAGGGTATTGGAGCCAAGTTGCTATTACAGatgggTTACAAACCTGGCAAAGGGTTAGGTAAAGACCTCCAGGGTATATCAGCACCGGTGGAAGCCACTGTCAGGAGAGGAAGAGGTGCTATCGGAGCTTATGGACCTGAAAAAGCAGCTcttAAAGCCAAAAAAGAAGAGGAGAAACGTCTAAAAGAAAAAGAGGAGCAAGATAAAGAGATAACGGAAAAGTCTTACAACTGGAAGAAATCTCACAAAGGACGCTACTTCTACCGAGACTCGGCCGATGTCATACAAGAGGGTAAACCCACGATGCATACTATGGCCAGCAGCGAGCTATCTCGCGTGCCAGTGATAGACATGACGGGTAAGGAGAAGCGCGTGCTGAGCGGGTACCACGCGCtgcgcgccgccgccccgcGCTTCGAGCACGAGCCGCGCCGCAAGTGCGACCACTTCGCGGCGCCCGAGCTCGCTCACAACCTCGCGCTGATGGTCGACTGCTGCGAACAGGATATAATCCAAAACGCGCGTGAACTGAACGCGGCAGAGGATGAGATCGTAGTTCTCGAACGCGACCTGCAAGAGTGCGATCTGAACCTGGAGGAGCAGGACGACATCATCGCCAAGGTGCAGGTCATTCTGCATCGAGTGGAGGCACTGAACAGACCCGACCTCTCGCTGGAGGCCGCTTATGAAGTCCTGGCTGATTTGCAGGAGTCATACCCAATGGAGTACGAAATGTTCGCACTGGGCTCAATAGCGGGCAACATCGTAAGTCCGCTACTGAGCGCTCTCTTGGCTCCGTGGCAGCCATTAGAGGCTCCAGAAGAACCCATACCCACCTTTCGCAAGTGGCAACCATTGCTGACCGACGATGCGTATAATAGTCTGCTCTGGCAGCATTTTGTACCGCATCTCACTACCGCTtcagaATTATGGAATCCAAGGGTCCCCGAGCCAATGCTGCGTGCAGTGACAGCGTGGAACGAGGTGTGCCCGCCGTGGGTCGCCGGGGAGGTGATCACGCGTTGCGTCGTACCGCGCGTGTTAGCCGCCGTGCAGAACTGGGACCCCACTCACGACACTCAGCCCGTGCACTGCTGGGTGCTGCCGTGGCACGAGCTGGCAGgcGCAGCGTTATCAACAAGCGTGTATCCGCTTATCCGATCTCGCCTCTGCACGGCTCTGGCCGCGTGGCATCCTAGCGACGGCTCAGCGCGCGGCGTGTTGGCGGCGTGGCGTGGGGCGTGGCGCGGCGCGTTGGTAGCGTTACTTCACCACCACGTCGTTCCCAAGCTGCAACACGCGTTGCACCACGCGCCGATACAACTCGTGCCGGGGGATAATATACCGGCGTGGCAGTGGTGCGTGGAATGGTTGGACCTGCTGGGCGCGCCCAGTGTGGCGGCCATCGCCAGCCGTGAGCTGCTGCCGCGCTGGCTGGCGGCCCTAGCAGCTTGGCTCAACACAAACCCCGCCCACGCCACTGTGCTCAACTCATACACAGAGTTCAAGAAAATGTTCCCCGATGAGATTCTGAAAGAGCCTGCGGTCCGAGACGCCTTCCGCAAGGCTTTGGACATGATGAACCGGAGCACCGATATCGACACTGTGGAGCCCCCTCCCCCGCCCCGCTTCACCCCCGTAGATCCAAAGGAAACCTCCAGAATCGCAGACGCATTGGCCTCCGCCACACAACAGAAATCCTTCTCGGAACTACTCGAATCGCGATGCGTCGAAAAGGGAATCACGTTCGTACCTATCGTGGGGAAGAACAGGGAAGGAAGACCTATTTATAAGATAGGGGACAAACAGTGCTATGTAATAAGGAACGTTATTATGTATTCGGATGATTCGGGAAGGAATTTCGCGCCGATAAGCATAGATCGGTTGTTGAATATGGTTGAGGATTAA
Protein Sequence
MSDDEVIRFEITDHDLDNEFNFNRPRGKNKKEHQIYGMWAKDSDEEDNEDNIRQRTRKQKDYSAPIGFVMGGVQQAGKKKEEKKVSELESAEPSTSRPKFAPDSSDEEQPTLPAESETAGIRKKGQGMRTASLGSNVGNWEKHTKGIGAKLLLQMGYKPGKGLGKDLQGISAPVEATVRRGRGAIGAYGPEKAALKAKKEEEKRLKEKEEQDKEITEKSYNWKKSHKGRYFYRDSADVIQEGKPTMHTMASSELSRVPVIDMTGKEKRVLSGYHALRAAAPRFEHEPRRKCDHFAAPELAHNLALMVDCCEQDIIQNARELNAAEDEIVVLERDLQECDLNLEEQDDIIAKVQVILHRVEALNRPDLSLEAAYEVLADLQESYPMEYEMFALGSIAGNIVSPLLSALLAPWQPLEAPEEPIPTFRKWQPLLTDDAYNSLLWQHFVPHLTTASELWNPRVPEPMLRAVTAWNEVCPPWVAGEVITRCVVPRVLAAVQNWDPTHDTQPVHCWVLPWHELAGAALSTSVYPLIRSRLCTALAAWHPSDGSARGVLAAWRGAWRGALVALLHHHVVPKLQHALHHAPIQLVPGDNIPAWQWCVEWLDLLGAPSVAAIASRELLPRWLAALAAWLNTNPAHATVLNSYTEFKKMFPDEILKEPAVRDAFRKALDMMNRSTDIDTVEPPPPPRFTPVDPKETSRIADALASATQQKSFSELLESRCVEKGITFVPIVGKNREGRPIYKIGDKQCYVIRNVIMYSDDSGRNFAPISIDRLLNMVED

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01170615;
90% Identity
-
80% Identity
-