Samb072473.1
Basic Information
- Insect
- Scoparia ambigualis
- Gene Symbol
- -
- Assembly
- GCA_963921215.1
- Location
- OY992523.1:11996291-11998992[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.59 1.4e+02 5.4 2.0 1 23 5 27 5 27 0.98 2 20 0.09 22 8.0 0.7 2 23 55 77 54 77 0.95 3 20 0.0021 0.51 13.2 6.3 2 23 101 122 100 122 0.97 4 20 0.015 3.6 10.5 0.5 2 23 127 148 126 148 0.96 5 20 9.1e-05 0.022 17.4 3.0 1 23 153 176 153 176 0.94 6 20 0.0044 1.1 12.1 1.6 2 23 186 208 185 208 0.96 7 20 0.093 23 8.0 5.7 1 23 214 237 214 237 0.95 8 20 3e-05 0.0075 18.9 3.0 1 23 241 263 241 263 0.98 9 20 0.00026 0.063 16.0 2.4 1 23 269 291 269 291 0.98 10 20 0.065 16 8.4 0.2 1 16 297 312 297 314 0.86 11 20 0.4 99 6.0 0.4 1 20 354 373 354 376 0.92 12 20 0.15 36 7.4 0.0 2 23 404 426 403 426 0.91 13 20 0.00021 0.05 16.3 4.2 1 23 450 472 450 472 0.98 14 20 0.0043 1.1 12.2 0.4 3 23 478 498 477 498 0.96 15 20 2.7 6.7e+02 3.3 1.4 1 23 503 526 503 526 0.90 16 20 0.33 80 6.2 6.1 1 23 536 559 536 559 0.94 17 20 0.005 1.2 12.0 1.2 1 23 565 588 565 588 0.94 18 20 1.6e-05 0.0039 19.8 0.4 3 23 594 614 592 614 0.97 19 20 1.4e-05 0.0036 19.9 1.2 1 23 620 642 620 642 0.98 20 20 0.012 2.9 10.8 0.1 1 23 648 671 648 671 0.95
Sequence Information
- Coding Sequence
- ATGGGATCGAGTTTCAAGTGCTTTTTCTGCCTAGAGTATTATTCTGAACTCAATTCCTTGTTACAACACACGTCAACACATAAAACCATGACGCAGGACGAGGTTTTGGACAAATATGTGCCTAAAGGCAAAAGAACACTGCAAGTTGATATATCTGAACTGAAATGCAAGTTGTGTGGCATAAAATGTATAACTTTAGAGCTAATAAGACTCCATTTAGAAAAGGAACATGGTAAAGAGTTTTTCTCCGCCAGCAACGGCATGACTGAATACAATATGGAAGTTAAAAACGATATGATGACTTGCCACATTTGCAGGAAAAGTTTCCATTCATTCAAACTTCTCAACTCCCATATGAACAATCATGTCATCAAGGTAGTATGCGAAAACTGCGGTGCCGGTTTCCTAAACCAGCACATGCTTATGAAGCATAAAGAAACCCATTTGACAAAGATATTCGACTGCAAATTCTGTAATAAGTCGTTTTATAAGAAGAGCCAATTGAAATATCATACTGAAATAGTGCATAAAGGCAAAGCTCGAGTCAAGCCTAAAAAGTGCCCTCACTGCCCGCAAGTctttaaagaatattatagcaAGATGTCTCATTTAAGAGAAGTGCATGGTGTCACAAAGAATTTCCATTGCCatctttgcaaatctacttttATTACTAGGAGAGCTCTAACTGAGCACTCTAATAGGTATCATACGGAGAAGTATAAGTGCGATGTGTGCTCAAAGTGTTTCTCCATAGAGTCCCGATTGAAGCAACACATGCGAGGGCATACAGGGGAAAGAAACTTTGTGTGCCCCGTTTGCAAGAACGCGTACATGCATAAAATGACACTGAGAAAGCACATGAGGAACCACGGCACAGAGTTCAAATTTGTGTGCCCAGAATGCGGCACAGGGTTCCATAGTAAAAACGAATACATGTCTAATCAGCGGCCCGCTTCGAGCATCTGGTCAATGACATTGATGGAAAGAGAGAACGCGGCGTTGCTTCTGCAATCGACGACAATCAGACCGTTCACTTACATGTCGTTCCCTTTAAGATTCAAATGCTTCTACTGTGACGACGTGTTTCCGGAACTGACCAGCCTTCTTGAACACACGCCCAGTCACACTGTTCCAAGTTTAGCGGAAATGCTGAAGAGTTTACTCAAGAAAGGGAAGAAGACTATTAAAGTTGACATCTCTGAGCTCAAGTGCAAACTCTGCGACGCCCCGTTTCCCAGCGTAGACGAAGCACGGGTACACCTATCGGCGAGTCACGGGAAGAAATTCAACACGGACTCTGGGAACGGAATGATGGTGTACAGCCTGAAGATCAAAGATGGCGTCTTCACGTGCCACCTGTGCACGCAAACGTTCAACACTTTCTTCCTGTTAAACAAACACATCAACGTGCACTTCAACAACGCTATATGCGAGTGGTGCGGCAAAGGTTTCGTATCCCACCAGAGGCTGATTCAGCACAAAGAGATACACTTGAGAGGCAAATTTTACTGCGATAAGTGTAAAGTTTTCCTCGAAAGCCCAGCCAAATTTAAGTATCACAATGACAGGCTACACGGTATGCCCAATAAAGTCTTCAACATTTATAACTGCCAACACTGCTCCGCTAGATTCGACCACCATTACGAAAAAATGCGGCACATGAGCGACATTCATGGTATTAAGTTTGAATACTCATGTGAGACATGCAACTCCGTGTTTAAGACTAGGAAATCTTTGGCGGGTCACAGAGTGAAGTATCACATACAGAGCATAGCATGTGAAGTTTGCAAGAAGCCATTTGCTGAGCGCGGCCATCTTAAGAAGCACATGGCTATGCACACAGAAGAGAGGAATTTTCCCTGCTCCCTTTGTAATAAGAGATATAAGTATGAGAAAAATGTGAAGGCTCATATGAGAGTGCACAATCCTGACTGGAAATTCGCTTGCGCTGACTGCTGGATAGGTTTCGGCAATAAGGTGGAATATAGGAAGCATGTTGAAAAAACACATGGAAAAGTTCCAGTTATAGCTGCtcaattaaatcaattaaatataacGAATCAGGAATTCcttgcttcagaaggcacgtaa
- Protein Sequence
- MGSSFKCFFCLEYYSELNSLLQHTSTHKTMTQDEVLDKYVPKGKRTLQVDISELKCKLCGIKCITLELIRLHLEKEHGKEFFSASNGMTEYNMEVKNDMMTCHICRKSFHSFKLLNSHMNNHVIKVVCENCGAGFLNQHMLMKHKETHLTKIFDCKFCNKSFYKKSQLKYHTEIVHKGKARVKPKKCPHCPQVFKEYYSKMSHLREVHGVTKNFHCHLCKSTFITRRALTEHSNRYHTEKYKCDVCSKCFSIESRLKQHMRGHTGERNFVCPVCKNAYMHKMTLRKHMRNHGTEFKFVCPECGTGFHSKNEYMSNQRPASSIWSMTLMERENAALLLQSTTIRPFTYMSFPLRFKCFYCDDVFPELTSLLEHTPSHTVPSLAEMLKSLLKKGKKTIKVDISELKCKLCDAPFPSVDEARVHLSASHGKKFNTDSGNGMMVYSLKIKDGVFTCHLCTQTFNTFFLLNKHINVHFNNAICEWCGKGFVSHQRLIQHKEIHLRGKFYCDKCKVFLESPAKFKYHNDRLHGMPNKVFNIYNCQHCSARFDHHYEKMRHMSDIHGIKFEYSCETCNSVFKTRKSLAGHRVKYHIQSIACEVCKKPFAERGHLKKHMAMHTEERNFPCSLCNKRYKYEKNVKAHMRVHNPDWKFACADCWIGFGNKVEYRKHVEKTHGKVPVIAAQLNQLNITNQEFLASEGT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00682669;
- 90% Identity
- -
- 80% Identity
- -