Emer036037.1
Basic Information
- Insect
- Eudonia mercurella
- Gene Symbol
- -
- Assembly
- GCA_963082485.1
- Location
- OY720049.1:4406011-4408786[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.029 3.3 9.5 2.4 1 23 5 27 5 27 0.99 2 19 0.0083 0.95 11.2 0.3 2 23 55 77 54 77 0.95 3 19 7.9e-05 0.009 17.6 5.1 2 23 101 122 100 122 0.97 4 19 0.058 6.7 8.6 0.4 2 23 127 148 126 148 0.96 5 19 0.0001 0.011 17.3 2.0 1 23 153 176 153 176 0.94 6 19 0.0041 0.47 12.2 1.6 2 23 186 208 185 208 0.96 7 19 0.087 9.9 8.0 5.7 1 23 214 237 214 237 0.95 8 19 2.8e-05 0.0032 19.0 3.0 1 23 241 263 241 263 0.98 9 19 0.00042 0.049 15.3 2.4 1 23 269 291 269 291 0.98 10 19 0.17 19 7.1 0.5 1 20 333 352 333 355 0.93 11 19 0.0021 0.24 13.1 0.4 2 23 383 405 382 405 0.96 12 19 0.00016 0.018 16.6 2.3 1 23 429 451 429 451 0.98 13 19 0.0024 0.28 12.9 0.8 3 23 457 477 456 477 0.97 14 19 0.082 9.5 8.1 2.0 1 23 482 505 482 505 0.93 15 19 0.48 55 5.7 7.2 1 23 515 538 515 538 0.95 16 19 0.0035 0.41 12.4 0.9 1 23 544 567 544 567 0.96 17 19 1.5e-05 0.0017 19.9 0.4 3 23 573 593 571 593 0.96 18 19 3.5e-05 0.0041 18.7 1.1 1 23 599 621 599 621 0.98 19 19 0.026 3 9.7 0.1 1 23 627 650 627 650 0.92
Sequence Information
- Coding Sequence
- ATGGGATCAAGTTTCAAGTGCTTTTATTGTTTAGAATATTATTCTGAACTTACTTCGTTATTAAAACACACGCAAACAcatgaaattaaaacaaaggatgaaattttaaagaaatatgtcCCTAAAGGCAAAAGAACTTTGCAAGTTGATATATCTGAACTGAAATGCAAATTGTGTGGCATAAAATATACAACTTTAGAGCTTATAAGACTCCATTTAGAAAAGGATCATGGGAAAGAGTTTTATTCCGCCAGCAATGGTATGACTGAGTACAATATGGAAGTTAAAAATGATATGATGACTTGTCACATTTGCGGCAAAAGTTTCCATTCGTTTAAACTCCTTAACTCCCATATGAATAATCATGTCATCAAGGTAGTATGTGAAAACTGTGGTGCCGGTTACCTGAACCAGCACATGCTTATGAAGCATAAAGAAACCCATttgacaaaaagatttgactgCAAATACTGTAATAAGGCGTATTATAAGAAGAGTCAGCTGAAATATCATACTGAAATAGTGCACAAAGGCAAAGCTCGGGTCAAGCCTAAAAAATGCCCTCACTGTCCACAAGTCTTTAAAGAATATTATAGCAAAATGTCACATTTGAGAGAAGTCCATAGTATCACAAAGAATTTTCATTGCCATCTCTGCAAATCGACTTTTATTACTAGAAGAGCTCTCACTGAGCATTCCAATAGGTATCATACGGAGAAGTATAAGTGCGATGTGTGCTCTAAGTGTTTCTCTATAGAGTCCAGATTGAAACAACACATGCGAGGGCATACAGGAGAAAGAAACTTTATTTGTCCCGTTTGCAAGAACGCATACATGCATAAAATGACATTAAGGAAGCACATGAGAAACCATGtgTCAAGTCAGCGGCCTGCTACGAGCATCTGGTCAATGACCTTGATGGAACGAGAGAATGCGGCGTTGCTTCTTCAGTCTACGACAATAAGACCTTTCACTTACATGTCGTTTCCACTAAGATTCAAATGCTTCTATTGTGACGACATATTCCCAGAACTGAGCAGTCTCTTACAGCACACTCCCAGTCACACAGTTCCCAGTGTTGTGGAAATGCTGAAAAATTTCCtcaaaaaagggaagaagacCATCAAAGTTGACATTTCTGAACTGAAGTGCAAACTCTGCGAAACGCCGTTTTCGAACGTAGACGACGTGCGGCAACATCTAACGACGAATCACGGAAAGAAATTCAATATCGACTCCGGTAATGGTATGATGGTGTACAGTCTAAAGACTATAGATGGTATCTTCACGTGTCACCTCTGCGAGCAGGCTTTCAATAGCTTCTTCCTGTTGAACAAACACATCAACGTGCATTTCAACAACGCAATATGCGAATGGTGTGGCAAAGGTTTCGTTACCCACCAAAGACTGGTCCAGCATAAAGAGACACATTTGAGAGGCAAATTTTACTGCGACAAATGTAAAGTGTTCTTCGACAGTCCAGCCAAATTCAAATATCACAACGAAAGGTTGCATGGTATGCCGAATAAGGTATTCAACATTTATAACTGCCAGCATTGCTCCGTTAGATTCGACCATCATTACGAGAAAATGAGGCACATGAGTGAAACTCATGGTATAAAGTTTGAATACTCTTGTGAGACTTGTAACTCTGTGTTCAATACTAGGAAATCTTTAGCGGGCCACAGAATTAAGTACCACATACAGAGCATAGCCTGTGACGTTTGCAAGAAGCCATTTGCTGAACGCGGCCATCTTAAGAAACACATGGCCATGCATACAGAGGAGAGAAACTTTCCCTGCTCTCTTTGTAGTAAGAGGTATAAGTATGAGAAGAATGTGAAGGCTCATATGAGAGTACATAATCCTGATTGGAAGTTTGCTTGCGCTGACTGCTGGATCGGTTTCGGTAATAAGGTGGAATATAGGAAGCATGTGGAAGAGACACATGGGCAGGAGGATGCTTTAGCCAAACTGGATGATTCAGCTCTACCGTTAAATTGA
- Protein Sequence
- MGSSFKCFYCLEYYSELTSLLKHTQTHEIKTKDEILKKYVPKGKRTLQVDISELKCKLCGIKYTTLELIRLHLEKDHGKEFYSASNGMTEYNMEVKNDMMTCHICGKSFHSFKLLNSHMNNHVIKVVCENCGAGYLNQHMLMKHKETHLTKRFDCKYCNKAYYKKSQLKYHTEIVHKGKARVKPKKCPHCPQVFKEYYSKMSHLREVHSITKNFHCHLCKSTFITRRALTEHSNRYHTEKYKCDVCSKCFSIESRLKQHMRGHTGERNFICPVCKNAYMHKMTLRKHMRNHVSSQRPATSIWSMTLMERENAALLLQSTTIRPFTYMSFPLRFKCFYCDDIFPELSSLLQHTPSHTVPSVVEMLKNFLKKGKKTIKVDISELKCKLCETPFSNVDDVRQHLTTNHGKKFNIDSGNGMMVYSLKTIDGIFTCHLCEQAFNSFFLLNKHINVHFNNAICEWCGKGFVTHQRLVQHKETHLRGKFYCDKCKVFFDSPAKFKYHNERLHGMPNKVFNIYNCQHCSVRFDHHYEKMRHMSETHGIKFEYSCETCNSVFNTRKSLAGHRIKYHIQSIACDVCKKPFAERGHLKKHMAMHTEERNFPCSLCSKRYKYEKNVKAHMRVHNPDWKFACADCWIGFGNKVEYRKHVEETHGQEDALAKLDDSALPLN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01335260;
- 90% Identity
- -
- 80% Identity
- -