Samb073540.1
Basic Information
- Insect
- Scoparia ambigualis
- Gene Symbol
- -
- Assembly
- GCA_963921215.1
- Location
- OY992523.1:18611178-18617158[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 43 0.00053 0.13 15.0 4.5 1 23 44 66 44 66 0.98 2 43 0.52 1.3e+02 5.6 0.4 2 23 95 117 94 117 0.93 3 43 4.2e-05 0.01 18.5 2.9 1 23 165 188 165 188 0.95 4 43 0.0025 0.62 12.9 3.4 1 23 192 215 192 216 0.94 5 43 0.69 1.7e+02 5.2 0.2 3 23 219 239 217 239 0.96 6 43 1.4 3.5e+02 4.2 0.3 1 20 245 264 245 266 0.92 7 43 0.00094 0.23 14.2 2.1 1 23 319 342 319 342 0.98 8 43 1.1 2.8e+02 4.6 0.3 2 23 369 391 368 391 0.95 9 43 0.65 1.6e+02 5.3 0.2 1 23 413 436 413 436 0.94 10 43 0.005 1.2 12.0 0.1 2 23 442 464 441 464 0.93 11 43 0.022 5.4 9.9 0.9 1 23 469 492 469 492 0.95 12 43 0.052 13 8.8 0.2 2 23 498 520 497 520 0.92 13 43 0.0016 0.39 13.5 6.0 1 23 524 547 524 547 0.97 14 43 0.012 2.8 10.8 2.8 2 23 554 575 554 575 0.97 15 43 1.4 3.3e+02 4.3 0.3 1 23 623 645 623 645 0.95 16 43 0.18 45 7.0 0.1 2 23 673 695 672 695 0.92 17 43 0.18 45 7.0 2.2 2 23 716 738 715 738 0.96 18 43 7e-05 0.017 17.8 4.0 1 23 743 765 743 766 0.96 19 43 0.00071 0.17 14.6 0.4 1 23 770 793 770 793 0.94 20 43 0.083 20 8.1 0.5 2 23 796 818 795 818 0.95 21 43 0.79 1.9e+02 5.0 0.2 2 19 825 842 824 845 0.93 22 43 0.0063 1.5 11.7 1.2 1 23 899 922 899 922 0.93 23 43 0.72 1.8e+02 5.2 0.1 2 23 951 973 950 973 0.95 24 43 0.00012 0.028 17.1 0.4 1 23 995 1018 995 1018 0.97 25 43 0.00069 0.17 14.7 0.2 3 23 1025 1046 1024 1046 0.93 26 43 0.00022 0.054 16.2 2.2 1 23 1051 1074 1051 1074 0.92 27 43 0.00026 0.064 16.0 0.4 2 23 1080 1102 1080 1102 0.95 28 43 0.00017 0.04 16.6 4.5 1 23 1106 1129 1106 1129 0.97 29 43 0.65 1.6e+02 5.3 1.1 2 21 1136 1155 1135 1156 0.94 30 43 0.00079 0.19 14.5 1.0 1 23 1203 1225 1203 1225 0.95 31 43 0.82 2e+02 5.0 0.0 2 23 1253 1275 1252 1275 0.89 32 43 0.0085 2.1 11.2 0.1 2 23 1296 1318 1295 1318 0.95 33 43 0.00027 0.067 15.9 0.6 1 23 1323 1346 1323 1346 0.96 34 43 0.001 0.25 14.2 0.9 1 23 1351 1374 1351 1374 0.96 35 43 0.00054 0.13 15.0 0.3 2 23 1377 1399 1377 1399 0.96 36 43 0.00031 0.076 15.8 1.4 1 23 1482 1505 1482 1505 0.96 37 43 1.6 4e+02 4.0 0.0 2 23 1578 1601 1577 1601 0.93 38 43 4.8e-05 0.012 18.3 0.4 3 23 1608 1629 1607 1629 0.95 39 43 0.012 3 10.8 5.9 2 23 1634 1656 1633 1656 0.94 40 43 0.0023 0.55 13.1 3.4 1 23 1661 1684 1661 1684 0.97 41 43 6.1e-05 0.015 18.0 4.2 1 23 1688 1711 1688 1711 0.97 42 43 0.001 0.25 14.1 0.5 2 23 1718 1739 1717 1739 0.96 43 43 3.3e-05 0.008 18.8 1.8 1 23 1745 1767 1745 1767 0.98
Sequence Information
- Coding Sequence
- ATGCAATTTTTCATCTTTTCAGATGAAAATGAGTCGACAAATGGGCACAAGGCTAATAAGATTATGAGGAAGAACTTGCAAATATTGCTTAACAACACCACTATTATACCTTTCAAATGGCGTGGCCGATACATGTGCTTCTATTGCGGGAAACAAATCGACCATTACAGTAATTTGAAGAAGCATACTAGAAGCCACGGGAATTGCTCCGTGCACGGTCGAGGGTTAAAACTTTTGAAGGGCAACAACTCCGAAATCAAATTCGATTTGTCGGAAGACATCAAGTGCTTGTTGTGCCACGAAAGTTTCTCTGAAATTGGTACCATTACTGAACATCTTAGCTCCGAACATAAGTTGATGTACGACAAGAGGCGGGAATTCATCATGACTGCTTATAGGCTCGTTGACCTTAAATGCCTCTCTTGCCATGAGATATTTGACGGTTTGTCGAGACTCATTAAGCATTGCAACCGTAACCATCGTTCGAATTACTACATTTGCGACGACTGTGGGCGGACGTTCAACAAAAAGAGAGATTTGCGCTCCCATATACATTATTACCATAGGCATGAATATGTCTGCAAGCAATGCGATTTGAAATTCAAAGATAAGGCTACCTTTTTCAAACACAAGTTGCTGCCACACCATGTCATTTGTGATGTATGCTTTGAGAGGTTTCCGTCCGATAGGAAGAGGCTTGTCCACATGCGCgaacactttaaaaatgacgATTTCAACTGCGTGTCTTGTAAAAGGAAGTTTGATACTAAAATCGCTATAATGAATCATCTCTCCCAGTGCAAGGTAAAAATGAAGCAGCGCAGTCAATTGTATAAAGAATCTGCACGCCTTGACGTTACCAATAGGAAGCAGGTATCGGCCCATATTAAAGATAACCTCGTTTCCATTGTCAATATGTCTACCTTGTTACCTTTTAAGTTTTTCTTGGGTCAATTCAAATGTTTCTTTTGTAAGTCAAATTTTGTAGATAGTGACGACCTCAAAAAACACGTTAAAACAGAACATCCTTCTTGCAGCGACGTTAATCTTAAATGGGTTAGGCTTTATGAGGGATATCATTTTAAAGTTGATATATCGTCGCTTTCTTGCAAAGTGTGTTTGAAGCATATGCCGGACATAGACGCTTTGACGACGCATATAACGACGGAACACAAAATTGACTTCGACAAAACTTTTATCGGTAAATTGCAACCGTTCAAATTGATTAGTAAGAAATTCCCTTGTCTCTCTTGTAGTGAAACTTTCGAGCTGTTCGGAGATTTGCTGAAGCACAAAAGTGTGGTTCATTCTAAGAACATCACCGTGTGTATGTACTGTGGGAAACCGTTCAAAGCTATCGCCAGTTTGAGAGTTCATATATCACTGAACCATAACCCTGACGGGTATAAATGTAATCTATGTAGCATGGAGTTCACAACAGGGCACCTTTTGAGTGGTCACATGGGCAAAGTACATGGGAAAAAGAAGGTTAAATGCCAAATATGTTCAGAGAAATTTACATCTCCTTACATAATGAAGAGTCATATGATCGATGTCCATGAAAAAGGTTTTAGGTGCGACCATTGCGGCAAAATGTTCACGAACAAGTGTTTTATGCTCGAACACGTTCGCCGCATGCACTTGAAGGAGAAGAACGCGGAATGTACCGTTTGTTTTGAACGATTTTTCGACCATCGCCTTTTGAAGAATCATATGATAAAGCATATTGGATACCGTAATTTCGGTTGCGACTTATGCGATGAAAATGGGCCGGCAAAAGGGAAACTTACCAGTAAAAAGAGGAGGCGAAATCTGCAAACATTGTTCAACCATACCTCGATGATACCATTTAAGTGGCGCGGCAAATTCATGTGCTTTTACTGCGGCGACGACATTGACGATTATGTTGAGCTCAAAAAGCATACCAAAGCTCACGGAATCTGTTCAGAGAGAGATAGAGCCATTAAACTTGTCAAATCCAAAGAGTCGGAAGTCAAAATTGATGTATCGAACATGACATGTGAACTGTGCAATGAATCTTTTGTTTACTTCGATGACATAGTCGCTCATTTGACGTTGAAACACCAGCTGCCTTATGATAACGACTGTGATGTCAGTATCACGACATATCGTTTGGTTGATCTCAAATGCGTGTTCTGCGATGAGAGCTGCGACAATTTCTCTAGACTAGTGAAGCACGTGAATCGTAGCCATCCCATCAATTGTTTCGTATGCCACGAATGTGAACGACAGTTTAACAAAAAGAGAGACCTCGAATCTCATATTCGCATTCACCACAGGAAAGAGTATAAATGTAAGCGGTGCCCCTTAAACTTTCCCAACAACGCCGCGCTGCAGAAACATAAAGTGCGCGCCCACGTTTCCATGTGCAATATTTGTTTTGAACCCTTCACATCTGACAGTAAGAAATTGGATCACATGAGACAGGCGCATTATGATAAAGACTTTCTACAATGTGGTTTTTGTCAAAAGAAGCTAAGCACCAAACTGGCTCTCCTGAACCACGCAGGCAAATGCAATATGCAACAGTGTAAGTCAGACATGCTGACTTATCCAGACCCCGAAAAGTTAGACTTTAGCGATAAGAAACCTTCCGTGTCGGAAATAAGAAGTAATATCGCTTGCATTGTTAATATGTCCACGGCATTGCCGTTTAAGTACTTTATGAATAAATTCAGATGTTTTTATTGTCCGAAAGATTTTATTGAATGTGACGATCTCAAAGAGCACACTGTTATAGAGCATCCGTCCTGTAACAGTAAATTCAAATGTTTGAGACTTAGAAATAGGGAGCATGgcatcaaaataaaaattgacaTATCGTCGCTATCCTGTAAAATGTGTTTCGAACCTATGCAAGATTTGGATAACttaataaaccatttgatcacTGAGCACAAAGCTCAGTACGATAAGTCTGTCGATAATAATATGCAACCGTTCAAATTGATTAGGGATAACTTCGCATGCCCTTTCTGCGGGGAAGTGTACAGATACTTTAGTACTTTACTGAAACACATCAGTACGAGTCACACGGAAAACAGGAACATATGTTCATACTGCGGCATGTCTTTTAGAACCGATCCAAGTTTACGGGCTCACATCACGCTCAGACACAAGCCCCATGGTCACAAGTGTAGTGTTTGCGACAAGGATTTCACTACGAGACACGCGTTACGTGACCATTTGGGCAATGCGCACGGCAGTAAGGTGGCCAAATGCCAAGTCTGCTCGGAAATGTTCACGTCACAGTATGCGATGCAGCGGCACATGATAAACGTTCACGCCACTGGCCACAAATGCACGTACTGCGGCAAAATGTTCACGAAAAACTCGTTTATGGTCAACCATGTTCGACGCACTCATCTCAAGGAGAAAAATGTGGAGTGCTCCGTCTGCTTCGAAAGGTTCTTCGATATCCACCTCCTAAGAATGCACACGAGACACATTGACAGCAAGACAAATTTCTTTTCAGATGAAAATGATGCAGCGCCTTACGAGGGATGTGCCTCTGAGCGCAGGCGGAGGAACTTGAAAATATTATTCAACAACACCACGGTACTGCCATTCAAATGGCGCGGGCGGTTCCTTTGCTTCTACTGCCCTAAAAACTTTTCGGAATACGTGGAGTTGAAAAAGCACACCGCCACCCATGGCTTGTGCTCAACTAAAGACTATTCCTTGAAAGTGATTAAAGGAAGCCATATTGAAATCAAAGTGGACGTATCCGAAGTATCTTGCGAAGTATGCAATGAACCATTTAGAGAATTAACCGAGATTATAGACCATTTAATCGGTAAACATAACCTGGAGTATGATAAGACTGTCGAGATACCATACCAGAGTTACAGGCTTGTTGACATGCGTTGTTTGGTTTGCGATGAGAAATTCTCGTATTTTGGCTATCTGATAAGTCACGTGAACGTTGCTCACCCTCAGAACTGTTTCATTTGTGACGACTGTGGAGTCACGTTCAACAAGAAAAGGGACTTGGCAGTACACTTCAGGTATTATCACAGAAAGGGCGGGTATCCCTGCGATCAGTGTGTGAAGAATTTCGAGAGCTTCTATTTGTTACGAAAACACCAGAATAACGTTCATTTCAGAAAGTGTAAGAACTGTAATTTGCGATTCGCCTCTCTGGCTTTATTGCAGAAACACATTCTTATAGAGCACCCAGACGATGGTAGCTTGAAATGTGAGTTTTGCGCGAAGCAATGCCATTCTCAGCAAGGCCTGATACAACATAAGAGCAAGTGTCGTGTGAAGCTCATAATCTCGGTCGACGAACCGACCGACAAGTTTATGCCGACGGAGAATAATTCGGAACCCAAGAAGAAGCAAAATGTGAAACAAATCAGACAAAACATACAGTGCGTCCTGAATATGTCGACAGCTGTTCCCTTTAAGTTCTTCTCCAAATTCACATGCTTTTATTGCTCAAAAAAATTTGTGGATTTCGACGAACTCAGAAATCATACTTTAATTGAACACCCGGTCTGCGATTTGCAATCTAAATCTATGAGGAAATGTAAAGGTGAAAGAGTCAGTGTTAAAATAGACGTCAACTCGTTGAGTTGTAAGGTCTGCTGCCAAAAAATGGACAGTTTAAACTATCTCGTTGATCATTTGATTGCTGAACATAAGGTGGAATACGACAAATCGGTGGAAGGTTGCTTAGAACCGTTTAGGATTATGAAAGATAACATCCCTTGTCCTTTGTGCCCCGATCGAGTCTTCAGATACTTTGGAATACTACTCCGTCATATGAACTCTGAGCATAGCAACAACAATCGAATATGTGATTTCTGCGGTCGCAGTTTTAAAAACGTCGCCAATTTACGCGTCCATATGTCGTATACACACACAGGTTCATGCGAATGTAGCATTTGTGGCGTTAAATTTAAGAACCAATGGTGTTTAGCGAGGCATCGTGCGAAATGTCATGACGCGAAAGACTACAAATGCCCGAAGTGTCCAGAGCAATTTCAGTCTCAGTACCATAAACAGAAGCATCTAATTAAAATGCACAATATTGGACACAAATGCGAGCAATGCGGGAAGATGTTTACAAGAAACTCGTTTATGAAGGATCATGTAAGGAGGACTCATTTGAAGGAGAAAAATGTCATGTGTTCCGTTTGCAATGAAAAGTTCTTTGATAACTACCTTTTGAGGATGCATATGGTGAAGCATGAAGGGGAAAGGAGATTCAGTTGCACGGTTTGTGGTAAGGCGTTCCTTAGGCGAAGCAATCTGCATTCTCACATGGAAATGCACAAGAAGTACGGGCACGTGGATAGTTTGATGCATGATATGATTGACTAG
- Protein Sequence
- MQFFIFSDENESTNGHKANKIMRKNLQILLNNTTIIPFKWRGRYMCFYCGKQIDHYSNLKKHTRSHGNCSVHGRGLKLLKGNNSEIKFDLSEDIKCLLCHESFSEIGTITEHLSSEHKLMYDKRREFIMTAYRLVDLKCLSCHEIFDGLSRLIKHCNRNHRSNYYICDDCGRTFNKKRDLRSHIHYYHRHEYVCKQCDLKFKDKATFFKHKLLPHHVICDVCFERFPSDRKRLVHMREHFKNDDFNCVSCKRKFDTKIAIMNHLSQCKVKMKQRSQLYKESARLDVTNRKQVSAHIKDNLVSIVNMSTLLPFKFFLGQFKCFFCKSNFVDSDDLKKHVKTEHPSCSDVNLKWVRLYEGYHFKVDISSLSCKVCLKHMPDIDALTTHITTEHKIDFDKTFIGKLQPFKLISKKFPCLSCSETFELFGDLLKHKSVVHSKNITVCMYCGKPFKAIASLRVHISLNHNPDGYKCNLCSMEFTTGHLLSGHMGKVHGKKKVKCQICSEKFTSPYIMKSHMIDVHEKGFRCDHCGKMFTNKCFMLEHVRRMHLKEKNAECTVCFERFFDHRLLKNHMIKHIGYRNFGCDLCDENGPAKGKLTSKKRRRNLQTLFNHTSMIPFKWRGKFMCFYCGDDIDDYVELKKHTKAHGICSERDRAIKLVKSKESEVKIDVSNMTCELCNESFVYFDDIVAHLTLKHQLPYDNDCDVSITTYRLVDLKCVFCDESCDNFSRLVKHVNRSHPINCFVCHECERQFNKKRDLESHIRIHHRKEYKCKRCPLNFPNNAALQKHKVRAHVSMCNICFEPFTSDSKKLDHMRQAHYDKDFLQCGFCQKKLSTKLALLNHAGKCNMQQCKSDMLTYPDPEKLDFSDKKPSVSEIRSNIACIVNMSTALPFKYFMNKFRCFYCPKDFIECDDLKEHTVIEHPSCNSKFKCLRLRNREHGIKIKIDISSLSCKMCFEPMQDLDNLINHLITEHKAQYDKSVDNNMQPFKLIRDNFACPFCGEVYRYFSTLLKHISTSHTENRNICSYCGMSFRTDPSLRAHITLRHKPHGHKCSVCDKDFTTRHALRDHLGNAHGSKVAKCQVCSEMFTSQYAMQRHMINVHATGHKCTYCGKMFTKNSFMVNHVRRTHLKEKNVECSVCFERFFDIHLLRMHTRHIDSKTNFFSDENDAAPYEGCASERRRRNLKILFNNTTVLPFKWRGRFLCFYCPKNFSEYVELKKHTATHGLCSTKDYSLKVIKGSHIEIKVDVSEVSCEVCNEPFRELTEIIDHLIGKHNLEYDKTVEIPYQSYRLVDMRCLVCDEKFSYFGYLISHVNVAHPQNCFICDDCGVTFNKKRDLAVHFRYYHRKGGYPCDQCVKNFESFYLLRKHQNNVHFRKCKNCNLRFASLALLQKHILIEHPDDGSLKCEFCAKQCHSQQGLIQHKSKCRVKLIISVDEPTDKFMPTENNSEPKKKQNVKQIRQNIQCVLNMSTAVPFKFFSKFTCFYCSKKFVDFDELRNHTLIEHPVCDLQSKSMRKCKGERVSVKIDVNSLSCKVCCQKMDSLNYLVDHLIAEHKVEYDKSVEGCLEPFRIMKDNIPCPLCPDRVFRYFGILLRHMNSEHSNNNRICDFCGRSFKNVANLRVHMSYTHTGSCECSICGVKFKNQWCLARHRAKCHDAKDYKCPKCPEQFQSQYHKQKHLIKMHNIGHKCEQCGKMFTRNSFMKDHVRRTHLKEKNVMCSVCNEKFFDNYLLRMHMVKHEGERRFSCTVCGKAFLRRSNLHSHMEMHKKYGHVDSLMHDMID
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00682655;
- 90% Identity
- -
- 80% Identity
- -