Samb014516.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Scoparia ambigualis
Gene Symbol
Hr39
Assembly
GCA_963921215.1
Location
OY992503.1:36981039-37019503[+]

Transcription Factor Domain

TF Family
SF-like
Domain
zf-C4|SF-like
PFAM
AnimalTFDB
TF Group
Zinc-Coordinating Group
Description
The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 4 0.19 8.9e+03 -1.9 1.3 38 157 141 207 54 236 0.42
2 4 2 9.3e+04 -6.5 10.4 97 163 213 308 128 354 0.58
3 4 6.3e-08 0.0029 19.4 0.1 1 20 440 459 440 465 0.91
4 4 2.6e-65 1.2e-60 208.4 0.0 164 408 502 758 473 758 0.84

Sequence Information

Coding Sequence
ATGACGAGCGAGGGCGACCCAGTGAAGGTGGAAGGAGTGCACGTATCAGTTACCACCATCAGCATGTCGGGGCCGGAGACCAGCAACGTTCAATTCTCCTATAGCTCGAGCGGGGTCCGCATCAGCGTCTCTTCTGACCCTCACGACGAGGACTCTACCGACGCGGAGATTTCCAAGATAGACTTCACACAACATCAGAATGAGGTGAACATGCGCAACAAGAAGAAGCGTCCGTCCAGCGGCGCGCAGCACGAGCCGTTGGCCGGTGACCGCGAGCGGCCCATGTCCTGGGAAGGGGAGCTGTCCGACTCCGAGATGGTGATCGACACCAGCGTTAATAACGATGAGAACAGCAGCTCCCTAGACCTGCAGTCGTCACGGGACTCCATAGACACGCTGCGCAACGTGACCATAAAGACGGAGCCGGTCAAGAGTGAGCCGTACCAGAGCCTGGACGACCAGAGGGCGTTGGACCTGAAGTACTCGGCGCCCTTGCAGCCGCACCAGAGGAGCCTCAGTATGAATAGAATATCAGTTCTGACGGACAACACTTCCCTCTCGCTCGCACGCCGGCCGTCTTCCCCCACTAGCAGCGCGAAATCCCTGGTGTTATCGGAGAACTCGATGCCACTCATGCCGCAGACCTCGCTGGGAGAGGTCCAGAACTTGACCATCAAGAAAGAGATGCAGTTGTCAGAGTTGAAGTGCGAGCCGTCGGTGGGCATGGACAAACTGTTGGGCGCGCTGCACGGCTCGCCGTTGCTGGGCCGCCTGCCGCGCGTGCAGTCCAGCGCCAGCACTGACTCGGCGGTGCACAGCATGTACACGCACAGCGTGTACAGCAGCCCGTCGGCCAGCCCGCGCGCCACCCGCCACTACACGCCGTCGCTGTCGCGCAACAACAGCGACGCGTCGCACTCCTCCTGCTACTCGTACAGCTCCGAGTTCTCGCCCACGCACTCGCCCGTACAGGGCCGTCACCCCCCCGTTGTGTACCGCGAGGCGGCCAGCGTGTTCCCCGCGTCCCCCGCGCATGATGACGACACCGAGGCGGACGAACGACTCCACCACCACCAGGGCATCAGCCGGCAGCAGCTCATTAACAGCCCGTGTCCAATATGCGGCGACAAGATCAGCGGCTTCCACTACGGCATTTTCTCCTGCGAGTCGTGCAAAGGCTTCTTCAAGAGGACGGTGCAGAATCGCAAGAACTACATGTGCCTAAGGGGCGGGAACTGCCCCGTGACGGTAGCTACTAGGAAGAAGTGCCCCGCTTGCCGGTTTGACAAGTGCTTGGGATGCGGGATGAAGCTTGAGGCCATCCGCGAGGATAGGACCAGGGGCGGGCGCTCCACGTACCAGTGCTCGTACTCGCTGTCGGGCGCCGCGTCCACGGGCTCGCTGCTATCTGCACACGTGCCCACCACGCTGCGGCACGCCTCCAGCCTCACCTGCGTAAATGGCCCCGGCTCTTACAACAGTCGAGGGGAGTCGAGCAATAGTCGGTTAACGCCTGACATTCCCCCATTATTGCAGGAGATAATGGAAGTGGAGCACCTCTGGCAGTACAACGAGTCGGAGCTGACGCGGCTGGGCAAGTGCCCTGGCAGCCCGTCCGCCAACCCGCTGCTCGCCGCCAGTGGGATCACCGCCCAGAATTCCAGCCCCGACTTCCTGGCGGACTTGTGCAACATCGCCGATCACCGGCTTTATAAGATCGTTAAATGGTGTAAAAGTCTGCCGCTCTTCAAGAATATATCGATCGACGACCAGATCTGCCTGCTGATCAACAGCTGGTGCGAGCTGCTGGTGCTGTCGTGTTGCTACCGCGGCGTCGGCACGCCGGGCGAAGTGCGCGTCGGCGGCGGCCGCGGCATCACGCTCGACCAGAGCGCCAAaTTGGGCTTAACGCCTTGTATAGAACGAATGCTGAGCTTTACCGACCATTTGAGGAGATTACGAGTAGATCGATACGAATATGTTGCCTTGAAGGTCATCGTACTTCTCACATCAGACACGCCCGAGCTTCGTGAGTCCGAGAAAGTGCGCGCGTCACAGGAGAAAGCTCTCGCCGCGCTGCAGGCGTACACGGCGGCGCACTCGCCCGACACACCCGCCAAGTTTGGGGAGCTGCTGCTGAGGATCCCGGAGCTGCAGCGGACTTGCCAGTTTTTCATGCAAGTCGGCAAGGAAATGCTCAATCCCGCGAACAAGAACAAAGATGGCGACGGTCCCAGCTTCAACCTGCTGATGGAGTTGCTCCGGGGCGACCACTGA
Protein Sequence
MTSEGDPVKVEGVHVSVTTISMSGPETSNVQFSYSSSGVRISVSSDPHDEDSTDAEISKIDFTQHQNEVNMRNKKKRPSSGAQHEPLAGDRERPMSWEGELSDSEMVIDTSVNNDENSSSLDLQSSRDSIDTLRNVTIKTEPVKSEPYQSLDDQRALDLKYSAPLQPHQRSLSMNRISVLTDNTSLSLARRPSSPTSSAKSLVLSENSMPLMPQTSLGEVQNLTIKKEMQLSELKCEPSVGMDKLLGALHGSPLLGRLPRVQSSASTDSAVHSMYTHSVYSSPSASPRATRHYTPSLSRNNSDASHSSCYSYSSEFSPTHSPVQGRHPPVVYREAASVFPASPAHDDDTEADERLHHHQGISRQQLINSPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYMCLRGGNCPVTVATRKKCPACRFDKCLGCGMKLEAIREDRTRGGRSTYQCSYSLSGAASTGSLLSAHVPTTLRHASSLTCVNGPGSYNSRGESSNSRLTPDIPPLLQEIMEVEHLWQYNESELTRLGKCPGSPSANPLLAASGITAQNSSPDFLADLCNIADHRLYKIVKWCKSLPLFKNISIDDQICLLINSWCELLVLSCCYRGVGTPGEVRVGGGRGITLDQSAKLGLTPCIERMLSFTDHLRRLRVDRYEYVALKVIVLLTSDTPELRESEKVRASQEKALAALQAYTAAHSPDTPAKFGELLLRIPELQRTCQFFMQVGKEMLNPANKNKDGDGPSFNLLMELLRGDH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00033911;
90% Identity
iTF_00806824;
80% Identity
iTF_01335096;