Samb025997.1
Basic Information
- Insect
- Scoparia ambigualis
- Gene Symbol
- -
- Assembly
- GCA_963921215.1
- Location
- OY992507.1:4910650-4911261[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 9.6e-09 0.0003 22.5 0.0 20 46 1 27 1 53 0.82 2 2 7.6e-09 0.00023 22.9 0.2 12 70 82 137 75 140 0.74
Sequence Information
- Coding Sequence
- ATGCGCGAGCTGGAGCGGCAGCAGCGCGAGCAGGAGGACCACGCCGACAAGGCCTACGACATGTACGCGGGCGCCACCCGCACCACCGCAGACTTCAAAGCCGCGAGATATCTGCACGAGGGAGCTGGAGCGGCACCAGTGCAAGCGGGAGGACCACGCCGACAAGGCCTACGACATGTACGCGGGCACCACCCGCACCACCGCAGACTTCAAAGGTACACAACGGCTCATGACAGCTCATTACAATGCGAGCCGCGagatatctgcctgagggagcTGGAGCGGCACCAGTGCAAGCGGGAGGACCACGCCGACAAGGCCTACGACATGTACGCGGGCGCCACCCGCACCACCGCAGACTTCAAAGGTACACAACGGCTCATGACAGCTCATTACAATGCGAGCCGCGagatatctgcctga
- Protein Sequence
- MRELERQQREQEDHADKAYDMYAGATRTTADFKAARYLHEGAGAAPVQAGGPRRQGLRHVRGHHPHHRRLQRYTTAHDSSLQCEPRDICLRELERHQCKREDHADKAYDMYAGATRTTADFKGTQRLMTAHYNASREISA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -