Samb041691.2
Basic Information
- Insect
- Scoparia ambigualis
- Gene Symbol
- retn
- Assembly
- GCA_963921215.1
- Location
- OY992512.1:11336406-11346121[-]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.4e-17 5e-13 51.5 0.1 29 89 4 62 1 62 0.93 2 2 5.5 5.1e+04 -3.0 0.0 25 38 194 207 156 208 0.66
Sequence Information
- Coding Sequence
- ATGGCCAAGTCAGTCCTGGACCTATACGAGCTGTACAACCTGGTGATAGCTCGCGGGGGACTAGTGGAAGTCATCAACAAGAAGCTGTGGCAGGAGATCATCAAGGGGCTCAGGCTGCCGTCGTCAATCACGTCTGCTGCGTTCACTCTTCGTACACAATATATGAAGTATCTCTACGACTACGAGTGCGAGAAGAAGAACTTGTCTACCAGGAGTGAGCTGGACGCCGCCATCGAAGGGAACAAGCGCGAGGGACGGAGGGCCTCGGGCCAGTACGACGCGCAGGCGGCGCTAGCCATGCCCCCCCTTAGCCGGGTGCCCGCCTCCCTGGCGCAGCTGTCTCAGCACATGCAGCCCCTGTCACTGTCCCTGGGCGGGGGGGTAGGAGGGGTACCCAGGCTGCCGCCGCTGCCCCCCCACGCGCCGCACATATCGCAGCACGACATCGAGTACCGCGTGAGGGAGTACATGAAGATGATACAGCAGCAGCGTGAGCTCATGAGGAACGGGTCGGAATCGCCGCCCGGCTCGAACGGGCCCGCCCCTATAATGTCGCCGCGCGACGCCGCCGCCCTCAGCGCGATAGACGTCTCCCGCCTAACCCTGTGGTCCCtgtacaacaacaacaacaacagccCCCAGCCAGACCTGGAGCCACAACGCGAGGCCCTCAACCTCAGCGAGAGTCCAAACTCTTCCATAAGCGGGGGCAAGCGGGAGGCGTGCCGCTCCCCCCCGCCGCCCGCCAAGCGGCGCACCCCGCGCCCGCCGTCGCCGCGGCCCCCCTCCCCGCCCCGCCCGCCGCAGCCCAACGGCAACCCCCCCAACGGGGTCAATGGGGCTGCGTTTAAGATTACCACTAGAGGGGACGCAAGCACAGGTGACCAGCAACTCGTAGTCTCCATAGAGCTCAACGGTGTCACATACGAAGGCGTATTATTCCCATCACAAGCCGGGAACGGGCAGAACGGCCACAGGCAAATGGTTTCTTAA
- Protein Sequence
- MAKSVLDLYELYNLVIARGGLVEVINKKLWQEIIKGLRLPSSITSAAFTLRTQYMKYLYDYECEKKNLSTRSELDAAIEGNKREGRRASGQYDAQAALAMPPLSRVPASLAQLSQHMQPLSLSLGGGVGGVPRLPPLPPHAPHISQHDIEYRVREYMKMIQQQRELMRNGSESPPGSNGPAPIMSPRDAAALSAIDVSRLTLWSLYNNNNNSPQPDLEPQREALNLSESPNSSISGGKREACRSPPPPAKRRTPRPPSPRPPSPPRPPQPNGNPPNGVNGAAFKITTRGDASTGDQQLVVSIELNGVTYEGVLFPSQAGNGQNGHRQMVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00723754;
- 90% Identity
- iTF_00723754;
- 80% Identity
- -