Samb039299.1
Basic Information
- Insect
- Scoparia ambigualis
- Gene Symbol
- Rel
- Assembly
- GCA_963921215.1
- Location
- OY992511.1:17959474-18019677[-]
Transcription Factor Domain
- TF Family
- RHD
- Domain
- RHD domain
- PFAM
- PF00554
- TF Group
- Beta-Scaffold Factors
- Description
- Proteins containing the Rel homology domain (RHD) are eukaryotic transcription factors. The RHD is composed of two structural domains. This is the N-terminal DNA-binding domain that is similar to that found in P53. The C-terminal domain has an immunoglobulin-like fold (See PF16179) that functions as a dimerisation domain [1-2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 7.1e-35 2.2e-30 108.2 0.2 1 168 50 219 50 220 0.87 2 3 0.72 2.2e+04 -2.5 0.1 118 153 492 527 477 533 0.71 3 3 0.11 3.4e+03 0.2 0.0 60 76 549 565 543 579 0.80
Sequence Information
- Coding Sequence
- ATGTCAGCAAGTGAACCCGACACGGAGTCATCAAATATCGGATCTCCATTATCACATTTCGATTCCCCGTACAGCTCCCCGTCTCAGCAAGTGCCGCATTTAGCTTATTCAATGACTGAGCTGACTTGCAACGATgGAAGGCCGTACCTACGGATCGTGGAGGAGCCACAGAACCACTTCAGGTTCAGATATAAGAGTGAAATGGTGGGGACACACGGCTGCCTTCTCGGAGAGTCGTACGCTACAAGTAAAACTAAAACGCATCCCACGgttgaaTTGGTGAACTACAGCGGGCGTGCGGTCATAAGATGCCGGTTGGCTCAGCAAAAGACGGCGGAGGAACACCCCCACAAGCTCCTGGAGGAAGAACATGATCGGGACGTGAGCTACATGGTGCCCGAGCGTGGGAGCTACAAAGTCGGGTTTGGTGGAATGGGAATCATACATACGGCAAAGAAAGATGTGCCCAGCTTgctgtataaaaaatattcggaAAGATTGAACTACCAACATATCAATCCAAAGGATCTGCGCATACGCTGTGAGAATGAAGCGAAGAGCATCAACTTGAACATTGTGCGACTGAGGTTCAGCGCTCACGACATCACCACCGATAACGAAATCTGCCCTCCTGTGTTCTCGAGGCCGATATTCAACATGAAATGCGCCGCTACCAACGATCTGAAGATATGTCGCATCAGCCGAAGCTGCGGCCGCGCCAGCGGTGGGGAGGACGTGTTCCTGCTTGTTGAGAAAGTCAATAAGAAGAACATAATAATTCGCATGTTCGAGGTGAATGAAAATGGTGAGGAGGTGTGGTCTGCAACGGGACACTTCCTTCAGAGCGATGTTCACCACCAGTACGCCATAGTTTTCAgGACCCCTCCATACCAGGATCCCAACACGACAGTGGATAAAAAAGTGTTCATAGAACTGGTGCGGCAAACGGATGGTCGCACCAGCGAACCCAAGGAGTTCCGCTATAAGGCTGCGCCGGCGTTTAAGTTTGGCAAGCGGCGGAAAACCAACTCCAATTACTCCTCGTACAGCTCTGAAAACTCTCTAAAGAGCACTGGTGATGTGCCGTCTACAGTACTGTTTATgaatCAGACTCATGAACAATCAGAGGAAGCAATAAAGGATGTCCGAATGTTTGCTATACCACAGATCCCACAGATACCCCTCGCTTCCCCGCTGAACAAAAGCGACCTTGGCGAAGCTTTATACGGGATGCAAGCCGAAGGTAGCCCGTCTGAAAGCAACTTCTATGAGAGCCCCATGTTGCCACAACACGTATTGGAACCACCCGACCTTCAGCTCAACTCTGCAGAACTGGATAGGATATTAAAGAACAACCCCAGCCTATCGGCCGAGGAGAAGGAACGGTTCTGCAATGCTGATTGGTCAGaATATCTGAAGTCTTTTCCTGACATAGACAGCACGAATGATGAGaagcCTGAGCCTAGTGTATCTAAGCAGACCCAAAAGGTGGAGATAGAGGAAGACAAAAAATGGAATCCAgtcgataaaaataaaaacagcgcTGAATACTCGGCGTTTTACAAGGCTGAAGACGGACAGGAAGTTAAGAAGGCCACAAGTTGGCCACCTGCACGGCGACGGGAGCCTTACTGCGCCGTCTGCGAGGACGAGGGAAGACCCCATGCCCATGTCATGGGTGGTCGACGATGTGACCCTCCCCTGAAAAGGGTGAGGGATGAGGTTTCCCGGACCGTCCCGCCCGCGCAGAGGGCGCAGCAGCGGAGGCCGGAGGTGGAGGAGGCCGAGATGCTGGAGGAGGCCGTGGCTTCGACCAGTGCCCCAGCATTTTGGGAGGTGTTGTACTCGCCGTTACCCAGCCCCAATATCTCTCCTTCGAGAGATACCGGGCTGGATGGGGATGACTCCCCGGGCGCAGCGTCGAGCATGTCGCTCCGCGCGTCCAGGCACAGCTCATCGCCGTCGCCGGATCTGTGCTGA
- Protein Sequence
- MSASEPDTESSNIGSPLSHFDSPYSSPSQQVPHLAYSMTELTCNDGRPYLRIVEEPQNHFRFRYKSEMVGTHGCLLGESYATSKTKTHPTVELVNYSGRAVIRCRLAQQKTAEEHPHKLLEEEHDRDVSYMVPERGSYKVGFGGMGIIHTAKKDVPSLLYKKYSERLNYQHINPKDLRIRCENEAKSINLNIVRLRFSAHDITTDNEICPPVFSRPIFNMKCAATNDLKICRISRSCGRASGGEDVFLLVEKVNKKNIIIRMFEVNENGEEVWSATGHFLQSDVHHQYAIVFRTPPYQDPNTTVDKKVFIELVRQTDGRTSEPKEFRYKAAPAFKFGKRRKTNSNYSSYSSENSLKSTGDVPSTVLFMNQTHEQSEEAIKDVRMFAIPQIPQIPLASPLNKSDLGEALYGMQAEGSPSESNFYESPMLPQHVLEPPDLQLNSAELDRILKNNPSLSAEEKERFCNADWSEYLKSFPDIDSTNDEKPEPSVSKQTQKVEIEEDKKWNPVDKNKNSAEYSAFYKAEDGQEVKKATSWPPARRREPYCAVCEDEGRPHAHVMGGRRCDPPLKRVRDEVSRTVPPAQRAQQRRPEVEEAEMLEEAVASTSAPAFWEVLYSPLPSPNISPSRDTGLDGDDSPGAASSMSLRASRHSSSPSPDLC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -