Basic Information

Insect: Scirpophaga incertulas
Gene Symbol: -
Assembly: GCA_036419045.1
Location: CM071641.1:16568431-16583703[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.2 33 6.6 0.2 1 23 84 107 84 107 0.95

2 18 9.7 1.6e+03 1.3 0.3 3 23 112 132 111 132 0.93

3 18 1.1 1.9e+02 4.3 0.4 2 23 136 158 135 158 0.92

4 18 1.4 2.3e+02 4.0 1.8 1 23 390 413 390 413 0.96

5 18 0.065 11 8.2 0.1 1 19 421 439 421 441 0.94

6 18 0.0018 0.3 13.1 1.6 3 23 453 473 452 473 0.97

7 18 2 3.3e+02 3.5 1.3 1 23 489 512 489 512 0.94

8 18 0.037 6 9.0 0.8 1 23 521 544 521 544 0.93

9 18 0.0032 0.53 12.3 0.7 2 23 622 644 621 644 0.93

10 18 1e-05 0.0017 20.1 1.9 1 23 678 700 678 700 0.97

11 18 3.6e-05 0.0059 18.4 2.1 1 23 707 729 707 729 0.98

12 18 1.5e-05 0.0024 19.6 2.9 1 23 734 756 734 756 0.96

13 18 0.00039 0.063 15.2 1.5 1 23 762 784 762 784 0.98

14 18 1.7e-06 0.00027 22.6 1.4 1 23 790 812 790 812 0.98

15 18 4e-05 0.0065 18.3 3.6 2 23 819 840 819 840 0.98

16 18 0.00066 0.11 14.4 0.1 2 23 848 870 847 870 0.96

17 18 0.00052 0.085 14.8 0.2 1 23 875 897 875 897 0.98

18 18 1.3e-05 0.0021 19.8 1.3 1 23 903 926 903 926 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.2	33	6.6	0.2	1	23	84	107	84	107	0.95
2	18	9.7	1.6e+03	1.3	0.3	3	23	112	132	111	132	0.93
3	18	1.1	1.9e+02	4.3	0.4	2	23	136	158	135	158	0.92
4	18	1.4	2.3e+02	4.0	1.8	1	23	390	413	390	413	0.96
5	18	0.065	11	8.2	0.1	1	19	421	439	421	441	0.94
6	18	0.0018	0.3	13.1	1.6	3	23	453	473	452	473	0.97
7	18	2	3.3e+02	3.5	1.3	1	23	489	512	489	512	0.94
8	18	0.037	6	9.0	0.8	1	23	521	544	521	544	0.93
9	18	0.0032	0.53	12.3	0.7	2	23	622	644	621	644	0.93
10	18	1e-05	0.0017	20.1	1.9	1	23	678	700	678	700	0.97
11	18	3.6e-05	0.0059	18.4	2.1	1	23	707	729	707	729	0.98
12	18	1.5e-05	0.0024	19.6	2.9	1	23	734	756	734	756	0.96
13	18	0.00039	0.063	15.2	1.5	1	23	762	784	762	784	0.98
14	18	1.7e-06	0.00027	22.6	1.4	1	23	790	812	790	812	0.98
15	18	4e-05	0.0065	18.3	3.6	2	23	819	840	819	840	0.98
16	18	0.00066	0.11	14.4	0.1	2	23	848	870	847	870	0.96
17	18	0.00052	0.085	14.8	0.2	1	23	875	897	875	897	0.98
18	18	1.3e-05	0.0021	19.8	1.3	1	23	903	926	903	926	0.98

Sequence Information

Coding Sequence: ATGTCTTCCAATGAATCCGACGATGAACCTTTATCAATTTTGGCCGCCACAAAAAGGCTTAATCCAGAGATATTTGAGATAACAAAAGTTTGTGTAAACAAAGAGGAtgctaaaaaaaagaaaactgttATGGACGCTCAGAAAAtgtcaataacaataaaactacgtaACAGTGAGCTGGAATCGAAGATTATTGAACGCCCATCAGATGTATGGCTTTAcatgaaagatttgaatcctggCGGCCCTTATAGCTGTTTGTTGTGCTCAGAATGGTTCATAAACCGTTCAAAACTGGTGGTTCACTATATAATCAATCACAAGAAAGATTTTTGCGGTATTTGCAGATATTTCGTGGAAAATAGAGAGATATGGAAGAAGCATATGGCATATCACATTCCCTGGTCATGCTCACAATGCACTGACACATTTCAATCAGAAAAGGAAATGAGGCAGCATTTGAGTGAAGCTCATAACTTGGTACACTGTCGGTTGTGTCACTTTAGACTGTCAGATGATGAACAATATAATTCACATCTACTTAAAAAACACTGTGTGACTAACCTAGTAATCAAAAGCGAGGAATTACTATGGATTAATGATGACACTAACTCTCTTAAATTCACTTGCAATTTATGTTGCAAACGCAATGTACTGACTACAAATTTTTTCAATCATTACATGGGTTATCAtcattttactttaaaatgttTCACATATTTTCTATCTGGTCAAGACATACAGTTTACAGTTGATGGAGCAGATGTCAGTTCACAATTTGTTGATGGTCAACTTAAAAATCGACTGAAATTTGGGTATGTTGATTTAGACAAGAATAATGAACATGAGGGATTTTCAGCAACTGAGATCAAACAAGAAATTTTAAGTGAATCAGAGGATACACAAGAGTCGCAGCAGGCTAAACCAGATGCATCATCTAAAGAAAACAATGTTGATTTTGATGAAGACAACAAACCCATAAAGACTGAATCTGTAAACACTTACAAAGGATATGAGGATTTTGATGTTACATCAATGGAGTTAATAGTGGTTcaaaagtgttatttttattatatattgggtTTGGAAAATCAGATGAAGTCCAAAATATTTCCAGAGGTATCTTCAATTGATTATGCTAGTACTAATGTAGATATTAGAATCAACTTTCACTGTGCTCTTTGTCAAATGAAAGTAGATTCTCTGCATGCTTACATACTTCACATgttaaaaatgcattttgtaaaagcagaaccAACGTTTTCATGTAGAATATGCACTGCTACCTTTGAAACACAACAGGAACTTGGAAATCATGAAGCTAATGAAATGAAGGACTTTGAAGATTTATGGTTATGCCAATTTTGCGATAAAGAATTTAAAGATAGAGAATCAACTAGGCGACACTTAAATGAACACTGGGATATTTTAGAGTTTGATAATTGCTTTAGTCCCCATTTAGGCTTCAAGTGTAAATTCTGTCCGACATTATTTTGGAATGAAACTGACAGGAAAACTCATCAAATTAGAGTACATTTTAACCAGCATAAAGAAGATTTTTACAAATGTGAAAGTTGTTCAATGATTTTTACTGATAAGGAATGGTTTGTCTATCATTTTATGGAAACACATcaaagtgatgatgatgaagctacaCATTGTCTCTTCAAATGTTGTTTATGCTGTAATGTACAGTCATCTATAGAAGAAATGAGAACACACTTTAAATCTGAGCATCCAGAAGCCAGAAAAATCTTTTGTTCAATGGGAAGTTGCATGTACAGACCTCTGAGTCAGAAAAAGTCATTTAAAATGCATGTAAAGATGGTCCATAAATCGGAGAAGTCTAAACCGGAGTGTTGCACCTGCGTGATTTGCGGACGCGAGTTCTCCAGCCTACGCGCGGTTTCCACACACATGTCACAGGTGCATGGGCCGGGTAAATTCAAGTGTGTCCTATGCAGGGAGGTCATGCACACTGCTGACGAAAGGAAACTACACTACTTGATCCGGCACCCCGGCCGACATCCTTTTGTGTGCAAAGATTGCGGCAAATCGTTCCAGTACAAGTCTTCGCTGTACATGCACAGGCAGGAACACTCGCCCGTCAAACAGAGCTTTACTTGCACATACTGTTCTAAGGTTTTCAATAAAAAAGATTCGTACCGCGAACATGTGCAAATCCACGAAGGACCGCGCCACGCTTGCTCGTACTGCCCGAAGAGATTTGTGCAACGTTCGAACATGTTGCGGCATGAGAGAAGACACACGGGCGAACGGCCGTATGCCTGTCCCCACTGCCCGCGTACCTTCGCCGATAAGGGCGCTTGTACCGCGCACTCGAGGACCCATACTAAAGACAAAGCTTATGCGTGCCTGTACTGTGGACAAACATTTGTACAGAAATCCAAGTTGACTTACCACATTAGGAAACACACGGGAGAGAATTTGGAAACGTGTACGGTATGTTCCAAAATGTTCACTAGCGCGTGTTCGCTTCGTGAACACATGAAGACACACAACACCAAGAAAGCCAACGTGCCGTGTCCATTGTGCGGCCGTACATACCAAGATGAGCGTTATATGTTACGTCACCTACGAAGCATTCACACTACGACCCGCTATACATGCCCGTTGTGTCGCAAGGCTCTCACTTCCGCGGCGGGGCTGAGGCACCACGTGGTTACACACAGCGATATCAATATGTACCGGTGCAAAATCTGTCCCAAATCGTACGCGGTGAGGCGAACGCTCGTTAAGCACCTACGAAGGCGACATTTGTTGAAAGGCGTTACCGATGTGACAAAGGATTTTTACCAAATTTTGGACCCCAGGGACTGCAACCTAGGACTTGAAGAAGAAGTTATGAACGAAATATTCGGTCCCCCAAAGAAAACACCAGAAGTTTTAATACAGAATCTAGTAGATTTGAAACAGTTAACTGATACTCACGGTACCCAAGATGCAAACGATAACGAGGATGGAGAAGAGACTGGTAGTGATAAGGATAAAACTGATGATGAGAGCGGTGACGATAAAGACGGCAATGGTGACGAGGGGAATGCGCGTGAATTAGAGCCAACGGATTTTGTGAGTGTCAAAATTGAACCTTATGATATGGAAGAAGATGAAGATATAGAGTGA
Protein Sequence: MSSNESDDEPLSILAATKRLNPEIFEITKVCVNKEDAKKKKTVMDAQKMSITIKLRNSELESKIIERPSDVWLYMKDLNPGGPYSCLLCSEWFINRSKLVVHYIINHKKDFCGICRYFVENREIWKKHMAYHIPWSCSQCTDTFQSEKEMRQHLSEAHNLVHCRLCHFRLSDDEQYNSHLLKKHCVTNLVIKSEELLWINDDTNSLKFTCNLCCKRNVLTTNFFNHYMGYHHFTLKCFTYFLSGQDIQFTVDGADVSSQFVDGQLKNRLKFGYVDLDKNNEHEGFSATEIKQEILSESEDTQESQQAKPDASSKENNVDFDEDNKPIKTESVNTYKGYEDFDVTSMELIVVQKCYFYYILGLENQMKSKIFPEVSSIDYASTNVDIRINFHCALCQMKVDSLHAYILHMLKMHFVKAEPTFSCRICTATFETQQELGNHEANEMKDFEDLWLCQFCDKEFKDRESTRRHLNEHWDILEFDNCFSPHLGFKCKFCPTLFWNETDRKTHQIRVHFNQHKEDFYKCESCSMIFTDKEWFVYHFMETHQSDDDEATHCLFKCCLCCNVQSSIEEMRTHFKSEHPEARKIFCSMGSCMYRPLSQKKSFKMHVKMVHKSEKSKPECCTCVICGREFSSLRAVSTHMSQVHGPGKFKCVLCREVMHTADERKLHYLIRHPGRHPFVCKDCGKSFQYKSSLYMHRQEHSPVKQSFTCTYCSKVFNKKDSYREHVQIHEGPRHACSYCPKRFVQRSNMLRHERRHTGERPYACPHCPRTFADKGACTAHSRTHTKDKAYACLYCGQTFVQKSKLTYHIRKHTGENLETCTVCSKMFTSACSLREHMKTHNTKKANVPCPLCGRTYQDERYMLRHLRSIHTTTRYTCPLCRKALTSAAGLRHHVVTHSDINMYRCKICPKSYAVRRTLVKHLRRRHLLKGVTDVTKDFYQILDPRDCNLGLEEEVMNEIFGPPKKTPEVLIQNLVDLKQLTDTHGTQDANDNEDGEETGSDKDKTDDESGDDKDGNGDEGNARELEPTDFVSVKIEPYDMEEDEDIE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01331944;
90% Identity: -
80% Identity: -