Basic Information

Insect: Schoenobius gigantellus
Gene Symbol: -
Assembly: GCA_963935595.1
Location: OZ012552.1:30864263-30884216[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 1.1 2.8e+02 4.4 0.2 1 23 85 108 85 108 0.96

2 18 1.8 4.7e+02 3.7 0.2 3 23 113 133 111 133 0.94

3 18 0.078 20 8.0 0.2 2 23 137 159 136 159 0.92

4 18 4.4 1.1e+03 2.5 2.7 3 23 164 185 162 185 0.94

5 18 0.1 26 7.6 0.1 1 19 422 440 422 443 0.93

6 18 0.0056 1.4 11.6 0.8 3 23 454 474 453 474 0.97

7 18 0.43 1.1e+02 5.6 1.2 1 23 490 513 490 513 0.94

8 18 0.024 6.2 9.6 0.9 1 23 522 545 522 545 0.93

9 18 0.0098 2.5 10.8 0.6 2 23 622 644 621 644 0.92

10 18 4.7e-05 0.012 18.1 2.1 1 23 678 700 678 700 0.97

11 18 0.00012 0.031 16.8 2.2 1 23 707 729 707 729 0.98

12 18 1.6e-05 0.004 19.6 2.9 1 23 734 756 734 756 0.96

13 18 0.0027 0.69 12.6 1.7 3 23 764 784 762 784 0.97

14 18 1.7e-06 0.00044 22.6 1.4 1 23 790 812 790 812 0.98

15 18 0.00037 0.095 15.3 3.5 2 23 819 840 819 840 0.98

16 18 0.00069 0.18 14.4 0.1 2 23 848 870 847 870 0.96

17 18 0.0029 0.73 12.5 0.2 1 23 875 897 875 897 0.97

18 18 3.1e-05 0.0078 18.7 1.4 1 23 903 926 903 926 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	1.1	2.8e+02	4.4	0.2	1	23	85	108	85	108	0.96
2	18	1.8	4.7e+02	3.7	0.2	3	23	113	133	111	133	0.94
3	18	0.078	20	8.0	0.2	2	23	137	159	136	159	0.92
4	18	4.4	1.1e+03	2.5	2.7	3	23	164	185	162	185	0.94
5	18	0.1	26	7.6	0.1	1	19	422	440	422	443	0.93
6	18	0.0056	1.4	11.6	0.8	3	23	454	474	453	474	0.97
7	18	0.43	1.1e+02	5.6	1.2	1	23	490	513	490	513	0.94
8	18	0.024	6.2	9.6	0.9	1	23	522	545	522	545	0.93
9	18	0.0098	2.5	10.8	0.6	2	23	622	644	621	644	0.92
10	18	4.7e-05	0.012	18.1	2.1	1	23	678	700	678	700	0.97
11	18	0.00012	0.031	16.8	2.2	1	23	707	729	707	729	0.98
12	18	1.6e-05	0.004	19.6	2.9	1	23	734	756	734	756	0.96
13	18	0.0027	0.69	12.6	1.7	3	23	764	784	762	784	0.97
14	18	1.7e-06	0.00044	22.6	1.4	1	23	790	812	790	812	0.98
15	18	0.00037	0.095	15.3	3.5	2	23	819	840	819	840	0.98
16	18	0.00069	0.18	14.4	0.1	2	23	848	870	847	870	0.96
17	18	0.0029	0.73	12.5	0.2	1	23	875	897	875	897	0.97
18	18	3.1e-05	0.0078	18.7	1.4	1	23	903	926	903	926	0.98

Sequence Information

Coding Sequence: ATGTCTTCCGATGACTCTGATGACGAACCCCTATCTATTTTGGCTGCAACAAAAAGGCTTAACACCGATAAGTTTGAGATATCAAAAGTTGTGAACGATGAAGACTctaataaaaagaagaaaaggACTGTGGAAGCAAAGAAAATATCATCTCTAACAATAAAACTGCGTAACTATGAACCGGAATCGAAAGTTATTGAACGCCCAACTGATGTATGGCTTTATTTGAAAGACTTGAATCCTTCTGGTCCTTATAGCTGTTTGTTGTGCTCGGAATGGTTCATAAACCGTTCAAAAATAATAGTTCATTATATAACTAACCACAAGAAAGATTTTTGCGGTATTTGcagATATTTTGTAGCAGATAGAGAGACATGGCTGAAACATTTGGAATTCCACATTCCTTGGTCGTGCTCACAATGCAGTGAAAGTTTTCCATCAGAACTGGAAATGAGGCAGCACTTGAGCGAAACTCATAACTTGGTTCACTGTCGTTTGTGTCACTTTAGAGTCTCAGATGATGAACAATATAACACACACCTACTTATAAAACATTGTGTCAAAAACATGGAAAGTAAATCTGAGGAGGTACTTTGGATTATTGAAGATGCTGACTGCCTTAAATTCACATGCAAGTTGTGTACAAAACATCATATACTGATTGGCAAGTTTTTCAATCATTACATGGGCTTTCATCACTTTACTCTCAAATGTTTCTCATTTTTCCTTTCTGGTCGGGACATCCAATTCACAGTAGATGGAGCTGATATCAGCTCACAATTTGTTGATGGTCAACTTAAAAATCGAATTAAATTTGGATATGTTGATCTGGAtaagtttaataaaaatgaagaCTGTGTTGCACCTGAGATCAAACAAGAAGTTTTTAGTGAATCAGAGGACACACAAGAAGTGCAACAGGCCAAAACTGATGAAGGGTCAAAAGATAACAATGCTGACGGTAATGAAGACTGTAAGCCCATAAAAACTGAACCTGCAAATTACTATAAAGGTGATGAAGATTTTGATGTTACGGCAATGGAGTTAATAGTAATTCAGaagtgttatttttattatatatttgggTTGATTAACCAGATTAACTCTAAAGTACTACCAGAGGTATCGTCAATTGATTATGCCTCAACTAATGTTGATATTAGGGTCAAAATACACTGTTCtctttgtaaaattaaacaagGTTCTCTGCAAGCTTATTTACTTCACATGTTAAAAATGCATTATGTTAAAACAGTGCCAACGTTTTCGTGCAGAGTATGCACAGCAACCTTTGAAACTCAGCAGGAACTTGGGAACCATGAGGCTAAAGAAATGAAGGAGTTTGATGATTTATGGCTATGTCAGTTTTGTGATAAAGAATTTGACAATAGAGAAGCTACAAGGCGACATTTAAATGAGCATTGGGACATCCTAGAGTATGACAATTGCTTTAGTCCACATTTGGGCTTTAAGTGTAAGTACTGCCCAACATTGTTTTGGAATGAAACTGACAGGAAGACTCACCAAATCAGAGTACATTTTATCAATCATAAGGAAGATTTTTACAAATGTGAAAGCTGTTCAATGATTTTTAGTGATAAGGAGTGGTTCATCTATCACTTCATGGAGAAACATCAAAGTGACGATGAAGCTACACATTGCCTTTTCAAGTGTTGCCTATGCTGTATTGTACTgttaacaattgaagaaatgAGAACACATTTCAATTCTGATCACCCAGAGGCTAGGAAAATATTTTGCTCCATGGGAAATTGCATGTATCGGCCTCTTAGTCACAAAAAGTCTTTTAAAATGCATGTCAAGATGGTCCATAAGATGGAGTCGTCTAAGGCAAAGTGTTGCACGTGTGTGATCTGCGGCCGCGAGTTCTCGAGTATACGCGCGGTTTCGACCCACATGTCACAAGTGCACGGGCCCGGCAAATTCAAGTGCATTCTGTGCAGGGAGGTCATGCACACTGCTGATGAAAGGAAACTCCACTACCTAATCCGGCACCCTGGCCGACACCCGTTCGTATGTAAAGAGTGCGGCAAATCGTTCCAGTATAAATCTACACTCTACATGCACAAGCAGGAGCACTCGCCCATAAAACAGAGCTTCACTTGTACATACTGTTCGAAGATTTTCAATAAGAGGGATTCGTTCCGCGAGCACGTGCAAATCCACGAGGGCCCGCGGCACGCGTGCTCGTACTGCCCCAAGCGGTTCGTGCAGCGCTCCAACATGCTGCGGCACGAGAGGCGGCACACGGGCGAGCGGCCCTACGGCTGCCCACACTGTCCCCGCACCTTCGCCGACAAGGGCGCATGTACCGCACACTCCCGCACCCACTCCAAAGACAAGGCGTACGCGTGCCTGTACTGTGGGCAGACATTCGTACAGAAGTCCAAGCTGACTTACCATATAAGGAAACACACGGGAGAGAATTTAGAAACGTGTACTGTCTGCTCGAAGCTGTTCACCAGCGCGTGCTCGCTCCGGGAGCACATGAAGACGCACAACACCAAAAAAGCCAACGTACCGTGCCCTCTATGCGGTCGCACGTACCAAGACGAGAGGTACATGCTGCGCCACCTGCGCAGTATCCACACGACGACGCGCTACGCGTGCCCACTATGCCGCAAGGAGCTCACCTCCGCCGCAGGGCTGCGGCACCACGTGGTCACGCACAGCGACATCAACATGTACCGGTGTAAAATCTGTCCGAAGTCGTACGCGATCAGGCGGACACTTATCAAGCACTTGCGCAAGCGACACTCCTTGAAGGGCGTCAACGAGGCGATAAAGGAGTTCTACCAAACGCTGGACCCCAGGGAGTGCAACCTCGGCCTCGAGGAGGACGTCATGAACGAGATATTCGGCCCCCCGAAGAAGGCCCCCGAAGTTCTGTTGGGGAACCTCGTTGAATTGAAGCAGCTAACGGCCACTGGCGGGATCCAAGACGGCAACGATATTGAGGAGGATGATAACGAATCAGGCAATGATAAAACGGATGATGATAGCGGTGATGATAGGGACGGCGAGGGCAGTGATGAGAACGCGGGTGAATTGGAGCCGACGGACTTTGTTAGTGTCAAAATTGAACCGCTCGATCCGGAGGAGGATGAAGATATGGAAtaa
Protein Sequence: MSSDDSDDEPLSILAATKRLNTDKFEISKVVNDEDSNKKKKRTVEAKKISSLTIKLRNYEPESKVIERPTDVWLYLKDLNPSGPYSCLLCSEWFINRSKIIVHYITNHKKDFCGICRYFVADRETWLKHLEFHIPWSCSQCSESFPSELEMRQHLSETHNLVHCRLCHFRVSDDEQYNTHLLIKHCVKNMESKSEEVLWIIEDADCLKFTCKLCTKHHILIGKFFNHYMGFHHFTLKCFSFFLSGRDIQFTVDGADISSQFVDGQLKNRIKFGYVDLDKFNKNEDCVAPEIKQEVFSESEDTQEVQQAKTDEGSKDNNADGNEDCKPIKTEPANYYKGDEDFDVTAMELIVIQKCYFYYIFGLINQINSKVLPEVSSIDYASTNVDIRVKIHCSLCKIKQGSLQAYLLHMLKMHYVKTVPTFSCRVCTATFETQQELGNHEAKEMKEFDDLWLCQFCDKEFDNREATRRHLNEHWDILEYDNCFSPHLGFKCKYCPTLFWNETDRKTHQIRVHFINHKEDFYKCESCSMIFSDKEWFIYHFMEKHQSDDEATHCLFKCCLCCIVLLTIEEMRTHFNSDHPEARKIFCSMGNCMYRPLSHKKSFKMHVKMVHKMESSKAKCCTCVICGREFSSIRAVSTHMSQVHGPGKFKCILCREVMHTADERKLHYLIRHPGRHPFVCKECGKSFQYKSTLYMHKQEHSPIKQSFTCTYCSKIFNKRDSFREHVQIHEGPRHACSYCPKRFVQRSNMLRHERRHTGERPYGCPHCPRTFADKGACTAHSRTHSKDKAYACLYCGQTFVQKSKLTYHIRKHTGENLETCTVCSKLFTSACSLREHMKTHNTKKANVPCPLCGRTYQDERYMLRHLRSIHTTTRYACPLCRKELTSAAGLRHHVVTHSDINMYRCKICPKSYAIRRTLIKHLRKRHSLKGVNEAIKEFYQTLDPRECNLGLEEDVMNEIFGPPKKAPEVLLGNLVELKQLTATGGIQDGNDIEEDDNESGNDKTDDDSGDDRDGEGSDENAGELEPTDFVSVKIEPLDPEEDEDME

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01334165;
90% Identity: -
80% Identity: -