Basic Information

Insect: Scirpophaga incertulas
Gene Symbol: -
Assembly: GCA_036419045.1
Location: CM071633.1:5690949-5700582[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 27 6.7e-05 0.011 17.6 2.3 1 23 194 216 194 216 0.99

2 27 0.00048 0.079 14.9 0.8 2 20 265 283 264 285 0.93

3 27 0.00029 0.047 15.6 0.9 1 23 313 336 313 336 0.97

4 27 0.075 12 8.0 3.4 1 23 387 410 387 410 0.96

5 27 8.2e-05 0.013 17.3 0.1 1 23 430 452 430 452 0.96

6 27 2.5e-05 0.0041 18.9 1.9 2 23 492 513 491 513 0.97

7 27 0.00018 0.03 16.2 2.0 2 23 555 577 555 577 0.97

8 27 5.1e-05 0.0083 18.0 0.9 1 23 627 650 627 650 0.95

9 27 0.016 2.6 10.1 0.2 1 23 711 733 711 733 0.97

10 27 0.0091 1.5 10.9 5.5 2 23 745 766 744 766 0.96

11 27 0.079 13 7.9 1.8 2 23 778 799 777 799 0.96

12 27 0.0036 0.58 12.2 1.3 1 23 809 831 809 831 0.97

13 27 0.18 30 6.8 8.0 1 23 860 882 860 882 0.97

14 27 0.00046 0.075 14.9 2.9 1 23 893 915 893 915 0.98

15 27 7.9e-05 0.013 17.4 0.8 1 23 923 945 923 945 0.98

16 27 0.00028 0.045 15.6 0.3 2 23 965 987 964 987 0.97

17 27 3.3 5.5e+02 2.8 0.3 1 23 1005 1027 1005 1027 0.88

18 27 0.2 33 6.6 4.8 1 23 1034 1056 1034 1056 0.98

19 27 0.02 3.3 9.8 2.4 2 23 1067 1089 1066 1089 0.93

20 27 0.0078 1.3 11.1 0.1 2 23 1112 1133 1111 1133 0.95

21 27 0.0022 0.36 12.8 0.3 2 23 1214 1235 1213 1235 0.95

22 27 1.3 2.1e+02 4.1 4.5 5 23 1245 1263 1242 1263 0.94

23 27 0.013 2.2 10.3 0.7 2 23 1274 1296 1273 1296 0.95

24 27 0.31 50 6.1 3.3 2 23 1313 1331 1313 1331 0.90

25 27 0.41 67 5.7 1.9 2 23 1404 1425 1403 1425 0.93

26 27 0.011 1.9 10.6 0.8 2 23 1436 1458 1435 1458 0.95

27 27 0.48 78 5.5 2.2 2 21 1496 1515 1495 1516 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	27	6.7e-05	0.011	17.6	2.3	1	23	194	216	194	216	0.99
2	27	0.00048	0.079	14.9	0.8	2	20	265	283	264	285	0.93
3	27	0.00029	0.047	15.6	0.9	1	23	313	336	313	336	0.97
4	27	0.075	12	8.0	3.4	1	23	387	410	387	410	0.96
5	27	8.2e-05	0.013	17.3	0.1	1	23	430	452	430	452	0.96
6	27	2.5e-05	0.0041	18.9	1.9	2	23	492	513	491	513	0.97
7	27	0.00018	0.03	16.2	2.0	2	23	555	577	555	577	0.97
8	27	5.1e-05	0.0083	18.0	0.9	1	23	627	650	627	650	0.95
9	27	0.016	2.6	10.1	0.2	1	23	711	733	711	733	0.97
10	27	0.0091	1.5	10.9	5.5	2	23	745	766	744	766	0.96
11	27	0.079	13	7.9	1.8	2	23	778	799	777	799	0.96
12	27	0.0036	0.58	12.2	1.3	1	23	809	831	809	831	0.97
13	27	0.18	30	6.8	8.0	1	23	860	882	860	882	0.97
14	27	0.00046	0.075	14.9	2.9	1	23	893	915	893	915	0.98
15	27	7.9e-05	0.013	17.4	0.8	1	23	923	945	923	945	0.98
16	27	0.00028	0.045	15.6	0.3	2	23	965	987	964	987	0.97
17	27	3.3	5.5e+02	2.8	0.3	1	23	1005	1027	1005	1027	0.88
18	27	0.2	33	6.6	4.8	1	23	1034	1056	1034	1056	0.98
19	27	0.02	3.3	9.8	2.4	2	23	1067	1089	1066	1089	0.93
20	27	0.0078	1.3	11.1	0.1	2	23	1112	1133	1111	1133	0.95
21	27	0.0022	0.36	12.8	0.3	2	23	1214	1235	1213	1235	0.95
22	27	1.3	2.1e+02	4.1	4.5	5	23	1245	1263	1242	1263	0.94
23	27	0.013	2.2	10.3	0.7	2	23	1274	1296	1273	1296	0.95
24	27	0.31	50	6.1	3.3	2	23	1313	1331	1313	1331	0.90
25	27	0.41	67	5.7	1.9	2	23	1404	1425	1403	1425	0.93
26	27	0.011	1.9	10.6	0.8	2	23	1436	1458	1435	1458	0.95
27	27	0.48	78	5.5	2.2	2	21	1496	1515	1495	1516	0.94

Sequence Information

Coding Sequence: ATGCTGGATGATTTCTACCTCAATCTTCAaaatttcacatggaattttcATGAAGCAGGTCACGGTAAAAGAGCTCCTGATGGAGTGCATGAAGGTGATGGATTGCCAGATAAAATTTGCTCAGAGTGCATTCAAAAACTAAGCAGCGCCTTCATATTCAAACAGCAATGTGAGAGATCTGATGAAGAGCTGCGACGCAACTATGTTCCACCGCCAGGGTTTCATGTTACAACCCCACCGCCTCAGCCTAACAGACAAAGCAGTGATTCAGCGTTTTCGACCCACACTGAATTATCCTCTCAGACTAAACCATCGTCCTCCACCGACGGCGCCGCGACTCCTGCGAAGAGAAGTCGCAAGAGAAGTCGAGAAAGCATTGACGACACTTCAGTGAGCGGCCGCTCGCATGACAACACTATAACTACGAAACGGGTGTCGGAACTCAAAAATTTGCAAAAGCGTAGACGTTTTCAACGGTCTGCCAACAATTCTTCAGTGGACTCGGATTATGATGATAACAGTGTGTCCCAATTCTCAGCTGCCGAAACTGATTCCGATGAACCGTTGATCAAAAGCGAATTCAAGTGTCGGAAGTGTGATAAAGTCTTTTTGACGTCCAGAAGCCTCTCCAACCACATGAGAATACATTTGGCAAAATctgataatttatgtaaaagtgAAATAGGAAATATTCCAAAGAATCTTGAGGCCAAAGATGCAACATATCAGGTGTCTAAAGGTACGCATGATGTTTCTCAAAGCAATGATGCAACAGACGACGATGACAAACTGAGCTGTGAGAAGTGCGGCAAAACTTTTAagcttaaaataatgttaaaacgaCACCACGATGTTTGCAGAAGGACGCCACAGACATCTCCTCAGAAACAACTACTCATTTCTTTGGAGCCCATAGACGGCGTGAGTCACAAAAAATATGACTGTGAAATGTGCCCCGCCAAGTTGAAAACAATTGACAATTTGCAAAAGCATATGAGGATTTGTCACGCTGCAGTtcttaataaaagtaaatatgataaattagtACAACAACAAAAAGTGTCTGTGCCATGCATTTTTTGCAAATTACCATTTGATGACTTTGATGTTCATAGTGCACACTTTGCCGTGTGCCCTGAGAGATTTGAAACTTCAATGTATGAATGCACAGTGTGTCAAAAGATGACGTATAAAAAATGTGCTTATTTAAAGCACATTAAGGACATGCATTTTGTACAGAGGAGCTCTGATGCTAATTCTTATGAATCAGACACTCCTAAGGAACAATTTGAATGTCGTATGTGCGGTAAGAAATTATCAACTCAAGACCAGTTGATTGCTCATCTAGCCGCTCACATGTCTAATATTGATGAAACAGACGCCTTAGCTGACGAGGACTCGagATCGACGTTGGACGATTCCAGATCAGTTGTGTCTGAACTCAATTCGTCTAATGTTTCCAGTGGTCCCCTCCAGTGTACCCTGTGCGATAAAAGGTTCAAGTATAAGAAAGCTCTTTCAACTCACATAATGAGACATAGTGAGGCAAATATAACTGTGAAAGAAGAGCCTTCAGAAAAGGCCCACTCGTCAAGTCTTCTTTGCGAAACCAAAGGGCCGGAAATCGAAAGTGAGTCTAGTCAGGAGGAAGGCGATGACAATACTTGTGATATCTGCGAGAAGCAGTTCTCATATAAGCGCTTACTTATACAACACAAACGCACTAAACACAACCAATGCTCTGGTACAAAACGGGCAAAAATCAATCTTAAGGATTGTTCTGTGCGATGTCTGATCTGCGATGTAGAAATGAAAGTGAGTGCTATCAATGAGCACAACCAACAacatatatctaaaaatatgaAGCCTCGGAATCTATATAGCTGCGCCGAATGCGGCGAAAAATTCAAGAGCTGTAGTGCTTTAGCAAACCATATTAAGTTTATACATCGTTTAAAACAGTCGCCTAAGGTGAAAGTGCCAAAGATGCTGGAGGGTGGATCTGAGCTGGCGGATTTTTGTGAAGTCGTTGTGACAAAAGCGGAACCCCTGGACGTTATCCAGAGTCACAACGACTTTGGAGAGGTTCCAGGCGACGCGAATGCCGAGCCGCTGATCAACATTGCTGGCTTCACGTGTCCATTATGCCAAAAACAAATGCCCACTCTTATTTCGCTCAAGAGACACGTTAACTGGCATGCTAATGttggaaaaaatattgaaaagaagaTTGAGTGCTTCGTATGTAAAGAGTCTTTCCGTTTTCAATGCCACTACAAGCTGCACATGCGTGAGCACTACCAGGACACCAACCTGGATCCGAAGCACCTCACCTGTTCCATTTGCAACCGTAAGAGTAAGCATTTGCGTGCCGCGCAAGCGCATATGAACTTTCACAAGCAGACGCGCTTCAAGAGCAAGGACTACCAGTGCTCCATCTGCAAGAAGGTATTCCAGTATCGCAAGGTCTACTTGTATCACATGGCCATACACTTCAAACGAGGGGAAAGTGTTCAAAATACTATAGTCGGCGATGTGTTACCCAATTCGGTGGACAAAGCTGCCTTCGATGGCACGCACACGTGCCAGCACTGCGGGAAAGTTTGCGACTCTGAGAACTCTCTGAAATGTCATATAAGATGGCACAATTCCAAATCCTCGCTATTTGGTGCCAGGCATGAATGCTATATATGCAAActtgtttttacaaataaaagaagGTTAGAAATACACACGAGAACCCATTACGAAGACGAAAACGGACCATTCAAATGTCAGATTTGTGGCAAGGGCTTTATCGAAGAAAATTATTTCCGGCGACACCTCAAGGGGCACAACTTCGATCATCAGTCGCACAAAGACAGGATTGAGAAATTGAGGAAAGATAAAGTCAAATGTCCCATTTGTACTCGTTTCTATCCAGACCTCGTGAAACTGATACGTCACTTGCGAAGAACCCACCCAGAAAGTAAAATGATCAAAGAAGATCCAGATGCGCCCCCTCCTATTTACTACTCTTGTAAATTGTGCGCGAAAATATTTCTCGATGAGAAGAGGTTAAAGTTGCATGAAGAGGCACACATGAGAAAACCTCTATTTTTCAAATGCAAATTTTGTGGGAAAAACACCACATCACTAAAAACTCacaatattcatattaaatctCATTTGACTCGAAACTATTTTGATAACCCGTTGAAATGTACTCAATGTGATGAGAGGTTTGTGAAAGGGTACGACTTGCATCATCACCTGCAGGATGTGCACAACATCAAGGAAACTTGGATGGCGGAGCGCACCGAGCAAACGCTGGAGGGTCCCCTGAAAGAACTCCAGTGTGCGATATGCCTTAAAGTGCTGGCGAGCAAAGGCAACTACGAAAGGCATATCGACTACCACAACACGTTACGGTGCAATTACTGTTTTGACTATTTCAGCACTTTGAGATTTTTGGAAGGCCATTTAGCATTCAGTTGCGATAAAAAGAAGTTGATAGGAGACACAGAGATTTATCCCAAGAAAATAAAGTGCCATATATGTTACAAAGCTTTCCACCTGCAAGTAAAGTTAGATTGTCATTTGAGAATCAAGCACGAGATAAAAGTATTCAAAGAAGCTTCATCAGACAAGAAGGAGACTGTCTGTGACTATTGCTTTAGAGTTTTTGAGAATGAAGATGCGCTTAatacacacaaaatatatcacCGCACTATCGGCTACTATGGCTGCATATACTGCAAACGAAAGTTTAACACACTCACACTTTACAGAAAACACAAAAACCACCATTTTTCACAATTGAATGTTGATAATCCATCCAAGTGTGAGCACTGCGATGAAACATTCGTCGCCTTCAGAGAGATGATATACCACATGCGCGACGTCCACGGCGACGACAAGGAATGGATCGTGATGCCCAAAGACTCGATAGAGGAGACTTGTAACATTTGCAATAAGAGATTCTACAATCTACACAAACATTTAGCATATCACGAGGAAAATAGATGTAGGAAATGCGCCGAATACTTCTTTTCAAGAAATGATTATGATAACCATCTGTGTGCTATAGAGAGTGACGATGAAGATCTACAAAACAACGGAAATGATATCATACCAGCGTATGAGGAGTGTCGCTTCTGTTTCAAACCTATAACGAGGGCTCAATCCAAAaaattacatgaaaatattCACAGGACATCTGGCGCCATCTCTTGTCGATTCTGCCATCtcaaatttaaaactatagACGCCTTCAACATTCACGCATTTTCACACCGAAGCAGAAAATATAACAAGAGGCCAATCAAGTGCCGAAAGTGTGGAgaaaagttcgtcaaatatgGTCCATTCATGAAACACCTAAAATATGTGCACAAATCAAATAAGAAAGTGCATTACCGTGCGATCGTGAAGCCGGAGCGGTGCGTGGTCTGCGGTGACGACTTTCCCAACCTGCACAACCACTATCGCGCACACCTGCTCAACCAGTGTCAGGCGTGCCAGAAATATTTCACCTCGGCCAAGTTATTCTCGCAGCACCAGTGCGACAAAGAAGATTCCGACCCGACAAAGGTGTTCACGAGTGACGAAAACCTACCTGCTCTCATTAATTCTTATGTGCCGAAAGATTTGGCGGACGATGAGAAGTTTTACGGGTACAGCGATGACGAAGACGAGCCGGAAGAAGAGCTCGAGTCTAAGCAAGGCGCCGCGAGCGATGCGGCCAAGCCGGACGCCGCCCCCGAGCAGAGCGCTCCCGCGAACCACGTTGACGACAAACTGACTCAGGTTGAGAAGGACTTGCGCTTCATGGTCTCGTCGCCGATCATTTCGGACGTGCTGTCACTGTATCAACAGAAGCAAGAAAAGAAACAGATTGTCGACGACAAGGACATTGTGAATTTAGCTGATGACGACTCCATGGACATCGATATAAGTATACCTGTTATCACTAttgactaa
Protein Sequence: MLDDFYLNLQNFTWNFHEAGHGKRAPDGVHEGDGLPDKICSECIQKLSSAFIFKQQCERSDEELRRNYVPPPGFHVTTPPPQPNRQSSDSAFSTHTELSSQTKPSSSTDGAATPAKRSRKRSRESIDDTSVSGRSHDNTITTKRVSELKNLQKRRRFQRSANNSSVDSDYDDNSVSQFSAAETDSDEPLIKSEFKCRKCDKVFLTSRSLSNHMRIHLAKSDNLCKSEIGNIPKNLEAKDATYQVSKGTHDVSQSNDATDDDDKLSCEKCGKTFKLKIMLKRHHDVCRRTPQTSPQKQLLISLEPIDGVSHKKYDCEMCPAKLKTIDNLQKHMRICHAAVLNKSKYDKLVQQQKVSVPCIFCKLPFDDFDVHSAHFAVCPERFETSMYECTVCQKMTYKKCAYLKHIKDMHFVQRSSDANSYESDTPKEQFECRMCGKKLSTQDQLIAHLAAHMSNIDETDALADEDSRSTLDDSRSVVSELNSSNVSSGPLQCTLCDKRFKYKKALSTHIMRHSEANITVKEEPSEKAHSSSLLCETKGPEIESESSQEEGDDNTCDICEKQFSYKRLLIQHKRTKHNQCSGTKRAKINLKDCSVRCLICDVEMKVSAINEHNQQHISKNMKPRNLYSCAECGEKFKSCSALANHIKFIHRLKQSPKVKVPKMLEGGSELADFCEVVVTKAEPLDVIQSHNDFGEVPGDANAEPLINIAGFTCPLCQKQMPTLISLKRHVNWHANVGKNIEKKIECFVCKESFRFQCHYKLHMREHYQDTNLDPKHLTCSICNRKSKHLRAAQAHMNFHKQTRFKSKDYQCSICKKVFQYRKVYLYHMAIHFKRGESVQNTIVGDVLPNSVDKAAFDGTHTCQHCGKVCDSENSLKCHIRWHNSKSSLFGARHECYICKLVFTNKRRLEIHTRTHYEDENGPFKCQICGKGFIEENYFRRHLKGHNFDHQSHKDRIEKLRKDKVKCPICTRFYPDLVKLIRHLRRTHPESKMIKEDPDAPPPIYYSCKLCAKIFLDEKRLKLHEEAHMRKPLFFKCKFCGKNTTSLKTHNIHIKSHLTRNYFDNPLKCTQCDERFVKGYDLHHHLQDVHNIKETWMAERTEQTLEGPLKELQCAICLKVLASKGNYERHIDYHNTLRCNYCFDYFSTLRFLEGHLAFSCDKKKLIGDTEIYPKKIKCHICYKAFHLQVKLDCHLRIKHEIKVFKEASSDKKETVCDYCFRVFENEDALNTHKIYHRTIGYYGCIYCKRKFNTLTLYRKHKNHHFSQLNVDNPSKCEHCDETFVAFREMIYHMRDVHGDDKEWIVMPKDSIEETCNICNKRFYNLHKHLAYHEENRCRKCAEYFFSRNDYDNHLCAIESDDEDLQNNGNDIIPAYEECRFCFKPITRAQSKKLHENIHRTSGAISCRFCHLKFKTIDAFNIHAFSHRSRKYNKRPIKCRKCGEKFVKYGPFMKHLKYVHKSNKKVHYRAIVKPERCVVCGDDFPNLHNHYRAHLLNQCQACQKYFTSAKLFSQHQCDKEDSDPTKVFTSDENLPALINSYVPKDLADDEKFYGYSDDEDEPEEELESKQGAASDAAKPDAAPEQSAPANHVDDKLTQVEKDLRFMVSSPIISDVLSLYQQKQEKKQIVDDKDIVNLADDDSMDIDISIPVITID

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01331939;
90% Identity: -
80% Identity: -