Sgig022056.1
Basic Information
- Insect
- Schoenobius gigantellus
- Gene Symbol
- -
- Assembly
- GCA_963935595.1
- Location
- OZ012544.1:7332726-7337936[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 27 0.0043 1.1 12.0 0.5 1 23 136 158 136 158 0.98 2 27 0.00056 0.14 14.7 0.8 2 20 206 224 205 226 0.92 3 27 1.5e-05 0.0039 19.7 2.3 1 23 254 277 254 277 0.97 4 27 0.0048 1.2 11.8 2.5 1 23 328 351 328 351 0.97 5 27 0.0027 0.69 12.6 0.2 1 23 371 393 371 393 0.96 6 27 1.2e-05 0.0031 20.0 2.1 2 23 434 455 433 455 0.97 7 27 0.00018 0.047 16.3 2.0 2 23 497 519 497 519 0.97 8 27 0.0028 0.71 12.5 0.4 1 23 569 592 569 592 0.95 9 27 0.016 4.1 10.2 0.2 1 23 652 674 652 674 0.97 10 27 0.0042 1.1 12.0 5.0 2 23 686 707 685 707 0.96 11 27 0.08 20 8.0 1.8 2 23 719 740 718 740 0.96 12 27 0.049 12 8.6 1.4 1 23 750 772 750 772 0.96 13 27 0.18 47 6.8 8.0 1 23 801 823 801 823 0.97 14 27 0.0004 0.1 15.2 2.8 1 23 834 856 834 856 0.98 15 27 7.9e-05 0.02 17.4 0.7 1 23 864 886 864 886 0.97 16 27 0.00028 0.072 15.7 0.3 2 23 906 928 905 928 0.97 17 27 3.3 8.5e+02 2.9 0.2 1 23 946 968 946 968 0.88 18 27 0.37 96 5.8 3.9 1 23 975 997 975 997 0.97 19 27 0.02 5.2 9.8 2.4 2 23 1008 1030 1007 1030 0.93 20 27 0.0078 2 11.1 0.1 2 23 1053 1074 1052 1074 0.95 21 27 0.0032 0.81 12.4 0.3 3 23 1156 1176 1154 1176 0.95 22 27 1.3 3.3e+02 4.2 4.5 5 23 1186 1204 1183 1204 0.94 23 27 0.013 3.4 10.4 0.7 2 23 1215 1237 1214 1237 0.95 24 27 0.17 43 6.9 2.9 3 23 1255 1272 1254 1272 0.90 25 27 0.1 26 7.6 0.7 2 23 1345 1366 1344 1366 0.94 26 27 0.0066 1.7 11.4 0.6 2 23 1377 1399 1376 1399 0.95 27 27 0.6 1.5e+02 5.2 3.5 2 21 1437 1456 1436 1457 0.94
Sequence Information
- Coding Sequence
- ATGGTCCACTTAAGTGGACCACGGGAAAAAATTTCTTCCTGTGGGTTCAGTATCACTACGCCGCCACCTCAGCCCAACAGACAGAGCAGCGACTCGGCATTCTCGACCCACACTGAACTATCGTCGCAGACGAAACCGTCGTCGTCCACGGACGGCGCCACGTCTCCGGCGAAGAGAAACCGCAAAAGGAGCCGAGAGAGCATCGACGACACTTCCGTGAGCAGTCGCTCGCACGACAACACTATAACCACTAAGCGTGTGTCAGAATTGAAGAACTTGCAAAAGCGTAGACGCTTCCAGCAGTCCGCCAACAATTCTTCGGTGGACTCTGATTACGACGACAACAGTGTATCGCAATTCTCCGCCGCCGAAACGGACTCCGACGAACCGTTGATCAAAAGCGATTTCAAGTGCGCTAAATGTGATAAAGTGTTCTTGAGCGCCAAGAGCCGCGCACTCCATATGAGGATTCACTCGGTAAAATCCGAAGGCTTAAGTACAAACGAAGTTGTCAGTATTCCAAAGAACGTCGCGAGGGACGCGGCCAAGCAGGTCGCGAAGGGTACAAATGATCTATCGCAAAGCAACGACGCAACAGACGATGATGACAAACTGAACTGTGAAAAGTGCGGCAAAACGTTTAAGctaaaaataatgttgaaaagGCATCACGAAGTTTGCGGGAAAACGCCGCAGACATCTCCTCAAAAACAACTGCTCATCTCCTTAGAGCCAATAGACAATGTTgctcaaaaaaaatatgactgcGAAATGTGCCCcactaaatttaaaacaattgaCAATTTGCAAAAGCATATGAAGATTTGCCATGCTGCAGTtctgaataaaagtaaatatgagAACTTAGTTGAACAAGAAAAATCATCCGTGCCGTGCATTTTCTGCAAGAAACCATTTGATGACTACTTTGTTTATAGTGCGCACTTTAGCGTGTGCCCTGAGAAATTTGAAACTACAATGTTTGAGTGCCCAGTGTGTCAAAAGATGACATATAAAAAGAGTGCTTATTGCTTGCACATTAAAAACATGCATTTTGCACCGAGGAGCACTGATGTTAAACTATTCGAGCCAGAATCTTCCAAAGAGCAATTTGAGTGCCGTATGTGCAGTAAGAAGCTTCCAACTCAAGATCAGCTGATCACCCATCTAGCAGCTCACATGTCGAATATTGACGAAACTGATGGCTTAGCCGATGAGGACTCAAGGTCGAGTATTATGGACGATTCCGGATCAGTTGCATCTGAATTCAATTCGTCAAACGTTTCCAGTGGTCCCCTCCAGTGTACCCTGTGCGATAAAAAGTTCAAGTATAAGAAAGCTCTTACAACTCACATAATGAGACATAGTGAACCAAACACTTCTGTGAAAGAAGAGCCTTCAGAAAAGGTACAGCCTTCAAGTCTTCTGTGTGAAACCAAAGGACCGGATATCGAAACTGAGTCTAGTCAGGAGGAAGGTGATGACAACACTTGTGATATCTGTGAGAAGCAGTTCTCATACAAGCGCTTGCTTATACAACACAAACGCACCAAACATAACCAATGCTCTGGTACGAAACGGGCGAAAATCAATCTTAAGGATTGTTCTGTGCGATGTCTGATTTGCGATATTGAAATGAAAGTGAGCGCCATCAACGAGCACAATCAACAACACATATCTAAAAATATGAAGCCAAGGAATTTATATAGCTGCGGCGAATGTGGCGAGAAGGCCAAGAGCTGTAGTGCTTTAGCCAACCATATCAAGTTTATTCATCGTCTGAAACAATCGCCTAAGGTGAAAGTGCCAAAAATGCTGGAGGGTGGATCTGAGCTGGCGGATTTTTGTGAAGTCGTTGTGACAAAAGCGGAACCCCTGGACGTAATCCAGAGTCACAACGACTTTGGCGAGGTTCCGGACAACGGCGCTGAGCCTCTGGTCAACATGGCTGGCTTCACTTGTCCCTTATGTCAAAAGCAAATGCCGACTCTTATTTCACTCAAGAGACACGTTAACTGGCATGCCAATGTTGGAAACAATATTGAGAAGAAGATTGAGTGCTTCGTATGTAACGagTCTTTCCGTTTTCAATGCCACTACAAACTACACATGCGTGAGCACTACCAGGATACGAACCTTGATCCAAAGCACCTTACCTGCTCTATTTGTAACCGCAAGAGCAAGCACCTGCGTGCTGCGCAAGCGCACATGAACTTTCACAAACAGACCCGGTTTAAGAGCAAGGACTACCAGTGCTCCATATGCAAGAGGATATTCCAGTATCGCAAAGTGTACTTGTATCATATGGCTTTACACTACAAACGAGGGGAAAGTGTTCAAAATACTATTGTCGGAGATGTGATGCCTAACTCTGTCGATAAAACTGCCTTTGACGGCACTCACACGTGCCAGCACTGTGGTAAAGTTTGCGACTCCGAGAACTCGTTAAAATGTCACATTAGATGGCATAACTCGAAATCCTCGCTGTTTGGTGCTAGACACGAGTGTTACATTTGTAACTTAGTTTTTACGAACAAAAGGAGGTTAGAACTTCACACGAGAACCCATTACGAAGATGAAAACGGGCCGTTCAAGTGTAACATTTGCGGCAAGGGTTTTATTGAAGAAAATTATTTCCGTCGCCATGTCAAGGGACATAACTTTGATCATCAGTCGCATAAAGACAGAATAGACAAGTTGAGGAAAGATAAAGTGAAATGTCCTATTTGCACTCGATTCTATCCAGATCTCGTAAAACTCATTCGTCATTTACGAAGAACGCACCCAGAAAGTAAAATGATTAAAACCGACCCGGACGCTCCACCTCCCATTTACTATTCCTGTAAACTGTGCGCTAAAATATTCCTCGACGAGAAGAGGTTGCAGATGCATGAAGAGGCACACATGAGAAAACCCCTATTCTTCAAATGCAAATTTTGTGGGAAAAATACAATATCACTTAAAACTCACAATATTCACATTAAATCACATTTGACTCGAAACTATTTTGATAATCCGTTGAAATGTACTCAATGCGATGAGAGATTTGTGAAAGGTTATGATTTGCATCATCACCTGCAGGATGTGCACAACATAAAAGAGACTTGGATGGCGGAGCGCACTGAACAGACCCTGGAGGGACCGCTGAAAGAACTACAGTGCGCCATATGCCTCAAAGTGTTGGCTAGCAAAGGCAACTATGAAAGGCACATCGACTATCACAACACATTACGGTGCAATTATTGTTTTGACTATTTCAGCACTATGAGATTTTTGGAAGGGCATTTGGCATTCAGCTGCGATAAAAAGATGTTGATAGGAGACACAGAGATATATCCCAAGAAAATAAAGTGCCATATCTGCTACAAAGCTTTCCATCTGGAAGTAAAGTTAGATTGCCACTTGAGGATCAAGCATGAgataaaagtttttaaagaagcCTCATCTGACAAGAAGGAGACTATATGCGACTACTGTTTTAGAGTTTTTGAGAATGAGGATGCTTTAAATACACATAAAAtttaccatcgtaccattggcTACTATGGTTGCATATACTGCAAACGAAAGTTCAACACGCTCACTCTTTACAGAAAACACAAAAATCATCATTTTGCCCAATTGAACGTAGATAATCCATCTAAATGCGAGCATTGTGATGAAACATTCGTCGCCTTTAGAGAGATGATATACCACATGCGTGACGTCCACGGCGACGACAAGGAGTGGATTGTGATGCCCAAAGACTCCATAGAAGAGATGTGTAACATATGCAACAAGAGTTTCTACAATCTACACAAACATTTAGCTTATCACGAAGAAAATAGGTGTAGGAAATGTGCCGAATACTTCTTTTCGAGAAATGATTATGATAACCATCTGTGCGCTATAGAAAGTGACGATGAAGACTTGCAAAATAACGGAAATGACATCATGCCGGCTTATGAGGAATGTCGCTTCTGTTTTAAACCTGTAACGAGGTCGAATTCCAAAAAATTGCATGACAACATACACAGGACATCCGGTGCGATTTCGTGTCGCTTCTGTGATCTCAAATTTAAAACCATGGACGCTTTCAATATTCATGCATTCTCACACAGGAGCAGAAAGTATAATAAGAGACCTATCAAGTGCCGCAAGTGTGGTGAAAAATTCGTCAAGTATGGCCCGTTCATGAAACATATAAAATACGTACACAAGTCAAATAAGAAAGTGCACTACCGCGCGGTCGTGAAGCCGGAGCGCTGCGTGGTGTGCGGCGATGACTTTCCCAACCTTCATAACCATTATCGCGCTCATCTTCTGAACCAGTGTCAGGCGTGCCACAAATATTTCACATCAGCCAAATTATTCTCGCAGCACCAGTGTGACAAGGATGATTCTGATCCGTCGAAGGTGTTTGTGAGCGATGAGAACCTTCCCGCGCTAATCAATTCTTACGTGCCGAAAGATATGGCGGACGATGAGAAGTTTTATGGTTTTAGCGAGGACGAAGTCGAACCTGAAGAAGAGTTAGGTGACGCTGAACAAAAAGCTAGTACTAAAGAAGTAAAACCTGGCACTCAGCTCCCCGAGCAGAGCACTACCACAAACCACGTCGAGGACAAACTAAGTCAGGACGAGAAAGACTTACATTTCATGGTCTCGTCGCCCATAATATCGGACGTATTGTCTCTGTATAAAAAGAAAGAGGAAAAGAAACAGATCGTTGACGACAAAGATATAGTTGATTTGGCAGACGATGACTCCATGGATATTGATGTTAATATACCCGTCATCACCATTGACTAG
- Protein Sequence
- MVHLSGPREKISSCGFSITTPPPQPNRQSSDSAFSTHTELSSQTKPSSSTDGATSPAKRNRKRSRESIDDTSVSSRSHDNTITTKRVSELKNLQKRRRFQQSANNSSVDSDYDDNSVSQFSAAETDSDEPLIKSDFKCAKCDKVFLSAKSRALHMRIHSVKSEGLSTNEVVSIPKNVARDAAKQVAKGTNDLSQSNDATDDDDKLNCEKCGKTFKLKIMLKRHHEVCGKTPQTSPQKQLLISLEPIDNVAQKKYDCEMCPTKFKTIDNLQKHMKICHAAVLNKSKYENLVEQEKSSVPCIFCKKPFDDYFVYSAHFSVCPEKFETTMFECPVCQKMTYKKSAYCLHIKNMHFAPRSTDVKLFEPESSKEQFECRMCSKKLPTQDQLITHLAAHMSNIDETDGLADEDSRSSIMDDSGSVASEFNSSNVSSGPLQCTLCDKKFKYKKALTTHIMRHSEPNTSVKEEPSEKVQPSSLLCETKGPDIETESSQEEGDDNTCDICEKQFSYKRLLIQHKRTKHNQCSGTKRAKINLKDCSVRCLICDIEMKVSAINEHNQQHISKNMKPRNLYSCGECGEKAKSCSALANHIKFIHRLKQSPKVKVPKMLEGGSELADFCEVVVTKAEPLDVIQSHNDFGEVPDNGAEPLVNMAGFTCPLCQKQMPTLISLKRHVNWHANVGNNIEKKIECFVCNESFRFQCHYKLHMREHYQDTNLDPKHLTCSICNRKSKHLRAAQAHMNFHKQTRFKSKDYQCSICKRIFQYRKVYLYHMALHYKRGESVQNTIVGDVMPNSVDKTAFDGTHTCQHCGKVCDSENSLKCHIRWHNSKSSLFGARHECYICNLVFTNKRRLELHTRTHYEDENGPFKCNICGKGFIEENYFRRHVKGHNFDHQSHKDRIDKLRKDKVKCPICTRFYPDLVKLIRHLRRTHPESKMIKTDPDAPPPIYYSCKLCAKIFLDEKRLQMHEEAHMRKPLFFKCKFCGKNTISLKTHNIHIKSHLTRNYFDNPLKCTQCDERFVKGYDLHHHLQDVHNIKETWMAERTEQTLEGPLKELQCAICLKVLASKGNYERHIDYHNTLRCNYCFDYFSTMRFLEGHLAFSCDKKMLIGDTEIYPKKIKCHICYKAFHLEVKLDCHLRIKHEIKVFKEASSDKKETICDYCFRVFENEDALNTHKIYHRTIGYYGCIYCKRKFNTLTLYRKHKNHHFAQLNVDNPSKCEHCDETFVAFREMIYHMRDVHGDDKEWIVMPKDSIEEMCNICNKSFYNLHKHLAYHEENRCRKCAEYFFSRNDYDNHLCAIESDDEDLQNNGNDIMPAYEECRFCFKPVTRSNSKKLHDNIHRTSGAISCRFCDLKFKTMDAFNIHAFSHRSRKYNKRPIKCRKCGEKFVKYGPFMKHIKYVHKSNKKVHYRAVVKPERCVVCGDDFPNLHNHYRAHLLNQCQACHKYFTSAKLFSQHQCDKDDSDPSKVFVSDENLPALINSYVPKDMADDEKFYGFSEDEVEPEEELGDAEQKASTKEVKPGTQLPEQSTTTNHVEDKLSQDEKDLHFMVSSPIISDVLSLYKKKEEKKQIVDDKDIVDLADDDSMDIDVNIPVITID
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01334154;
- 90% Identity
- -
- 80% Identity
- -