Sinc040160.1
Basic Information
- Insect
- Scirpophaga incertulas
- Gene Symbol
- -
- Assembly
- GCA_036419045.1
- Location
- CM071647.1:2080028-2082373[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 5.6e-05 0.0092 17.8 3.9 1 23 8 31 8 31 0.94 2 21 0.0011 0.19 13.7 0.3 2 23 37 59 36 59 0.95 3 21 2e-05 0.0033 19.2 0.2 2 23 68 90 68 90 0.97 4 21 0.00041 0.067 15.1 2.4 2 23 99 121 98 121 0.91 5 21 0.00043 0.071 15.0 0.3 2 23 129 151 129 151 0.96 6 21 5.3e-06 0.00086 21.1 2.0 2 23 160 182 159 182 0.96 7 21 2.4e-06 0.00039 22.2 0.9 1 23 188 211 188 211 0.97 8 21 0.023 3.8 9.6 2.9 1 23 219 242 219 242 0.97 9 21 0.001 0.17 13.8 0.1 1 23 262 285 262 285 0.97 10 21 0.016 2.7 10.1 4.4 1 23 309 332 309 332 0.95 11 21 0.72 1.2e+02 4.9 0.6 2 22 340 360 339 360 0.93 12 21 0.01 1.7 10.7 0.9 3 23 370 391 369 391 0.96 13 21 0.0045 0.73 11.8 7.3 1 23 413 436 413 436 0.97 14 21 1.4e-05 0.0023 19.7 0.7 3 23 444 465 443 465 0.97 15 21 0.00052 0.085 14.8 2.5 2 23 472 494 471 494 0.94 16 21 0.00015 0.025 16.5 2.5 1 23 500 523 500 523 0.98 17 21 0.16 27 6.9 6.5 2 23 531 553 531 553 0.94 18 21 0.00096 0.16 13.9 2.2 3 23 562 583 561 583 0.97 19 21 0.017 2.7 10.0 1.8 1 23 590 612 590 613 0.91 20 21 0.002 0.32 13.0 3.3 5 23 628 647 625 647 0.92 21 21 0.28 47 6.2 0.2 1 13 697 709 697 713 0.90
Sequence Information
- Coding Sequence
- ATGTTTCAAAGTGAACTTGACTATGTCTGTGATTATTGCAATCGCTCTTTTACCAGGAAATACAACTTGCAGTGCCACATAGAGAATACTCATATAAACTCGTCCTGCTATTGTGAAATCTGCGAGCAGAAGTTTGGAAGCCCTGCCGGCTTGCAGCTCCATTTGCAAAGAGGACATAATAGAAATGGACAACCTTACCCAGAATGTGACATGTGTGGGCGAATTTTTACAAGAAAACAAAACGTTGTATCCCACATGATCACCGTACATCTACAAGGCTCTGGACCTGAGATCAAATGCTTTCGTTGCAACAGAACTTTTACCACTATGAGAAACTTAAAAAGACACAAGGCTCTGCTGCACAACCCTGATATTAATTACCCTACATGCGATACATGTTTCAGGGTATTTAAAGCGAAAAGCGCTCTAATATCGCATATACAGTCAGTGCACAATACTAGCATAGAGAAGAAAGTCAAATGCCATTTATGCGACAAAATTTATACTAACAACAGAAATCTGAGGAGGCACTTAGAAATGTTGCACGGCGGTAAGGAGGAGTTTAGATGTGACATTTGCCCTAAAGCGTACACGTCGAATCAGAGTCTACGCAGACACGTGAAATCACAGCACTGTTGCGATGACTTATACACATATTCATGTGAACACTGCAATACATCTGTACAAGGGAGGAACAATTTAGAGATGCACATACATTCCTTTCACAGGACGGATTCTAACTCTCTAGACAATAGCGACGTGACATCCTTGAAGACTTTGGAATTCCCGTGCACGTCTTGCCCAAAAGCTTTTGAAGAGGAACCTCAGTTAAGGCAACACGTCAAGTCGGACCATTCCTTCGAAGCTTTCTATAACTACTGCAGAAAATCGTTGTTGCGTCAAGCCAACTACGGGAAAGATATTTTCCAATGCGAGTTTTGTTCAACTAACTTTGCAAACGTTTACGACTTCAAACACCATTTGAAATTCACTCACGAGAGAGAGTACTCCCTGTCGACTTGcaatgtgtgttttaacaaattttatacgAAAGAGGCTATAAGTGAGCATAGGAAAACTTGCTTGCCTCCCGACAACGTCAATGCTTGCAGTTATTGCAACAAATTGTTCACAGACATGTCCAGTTTGGAGTTCCACACGAGAATATTCCATCCACAAGCTAAATTGGCAGATAACGATATCACTTCCACAAACGCTGAGGACCCAGACTTTAACTTCAAGTGTACGCATTGTAATAGAATTTATTATAGCGACAGATCGTTAAAACACCATATGAAGTTAAAACACACAACAGATTTGGCCGTGGATTGCGAATATTGCGGCAAAGTTtgcaacaataaatattatttggctTCACATATCAAAATCGTTCATACCAACGTAACGTGGTCAAAATGCGATTTCTGCGAGAAGCAGTTTAAATCGAAACGCAATATAAGAAGACATATCGAATACACACATTTAGGTATGCAACGGTATAAATGTGTAGAATGCGAAACGCTTTTTAAAGAGAAACGTAGCCTTCGCAAGCATTTGAGGACGAAACATCCAAATTCTGTGGCTTTTCCCGAATGTCACATATGCCATAAAAGATTTGAGTCAGCAAAGTCGTGCAAAATCCACTTGAAGCTACTCCACTCTGTTAACATGAAGACAAACCCTTGCCACCTCTGTTCTATGTCTTTCAGTTCCCACGAGGCATTGTCTATCCATTTACAGACAAACCACTTGGCGAAAGACGCAATTTATAAATGTGAAGAGTGCAATCTGGTATTCAAAGGACAGGAGAAGTTTGACCAACATAACGACTTGCATCACGTCAATCTCTTTGTGAAGCAGAAAGTGTTGCCTCGATGCATTCTGTGCACGAAAGATTTTAGCACGCGTAAAACTCTCAAAAGACACATCAAGAAATTCCACTCGGAATTTAACGTAGATGAGTTGGCGACATTCGGATCTAGAAGAAGGAACTTCAGCGTAGACTGCGACGAGTGTATGAAACTGTTCAACGACGAATCTGTTTTCAATAACTACCAGAAGTTGAAACACCTGAGAgatacagttttatttaaatgtgaagAGTGTTCGACTTCCTACACGACCTTGGAGTATGCTATACAAAGACACAAAATGGCTAGTGTGGATACAAGTAAATCCAAAATGATCATGAGTGAACTATGCACTACAGAAATGAGCGGTGATGAAGCCACTGTGGCTAACTATGAATACTTGCACGAGATGGAACCAGTCAGCACGACTAACGATATGATTAAGACAGAAATGATTGACCTGGACGAAATAAAAGTTGAGGCAGTAACACCATAG
- Protein Sequence
- MFQSELDYVCDYCNRSFTRKYNLQCHIENTHINSSCYCEICEQKFGSPAGLQLHLQRGHNRNGQPYPECDMCGRIFTRKQNVVSHMITVHLQGSGPEIKCFRCNRTFTTMRNLKRHKALLHNPDINYPTCDTCFRVFKAKSALISHIQSVHNTSIEKKVKCHLCDKIYTNNRNLRRHLEMLHGGKEEFRCDICPKAYTSNQSLRRHVKSQHCCDDLYTYSCEHCNTSVQGRNNLEMHIHSFHRTDSNSLDNSDVTSLKTLEFPCTSCPKAFEEEPQLRQHVKSDHSFEAFYNYCRKSLLRQANYGKDIFQCEFCSTNFANVYDFKHHLKFTHEREYSLSTCNVCFNKFYTKEAISEHRKTCLPPDNVNACSYCNKLFTDMSSLEFHTRIFHPQAKLADNDITSTNAEDPDFNFKCTHCNRIYYSDRSLKHHMKLKHTTDLAVDCEYCGKVCNNKYYLASHIKIVHTNVTWSKCDFCEKQFKSKRNIRRHIEYTHLGMQRYKCVECETLFKEKRSLRKHLRTKHPNSVAFPECHICHKRFESAKSCKIHLKLLHSVNMKTNPCHLCSMSFSSHEALSIHLQTNHLAKDAIYKCEECNLVFKGQEKFDQHNDLHHVNLFVKQKVLPRCILCTKDFSTRKTLKRHIKKFHSEFNVDELATFGSRRRNFSVDCDECMKLFNDESVFNNYQKLKHLRDTVLFKCEECSTSYTTLEYAIQRHKMASVDTSKSKMIMSELCTTEMSGDEATVANYEYLHEMEPVSTTNDMIKTEMIDLDEIKVEAVTP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01331924;
- 90% Identity
- -
- 80% Identity
- -