Sgig073757.1
Basic Information
- Insect
- Schoenobius gigantellus
- Gene Symbol
- -
- Assembly
- GCA_963935595.1
- Location
- OZ012564.1:4532644-4534998[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 5.6e-07 0.00014 24.2 1.9 1 23 8 31 8 31 0.95 2 21 0.0019 0.48 13.1 0.9 2 23 37 59 36 59 0.95 3 21 3.3e-05 0.0085 18.6 0.2 2 23 68 90 68 90 0.97 4 21 2.7e-05 0.0069 18.9 4.4 2 23 99 121 98 121 0.92 5 21 0.00093 0.24 14.0 0.2 2 23 129 151 129 151 0.96 6 21 1.5e-05 0.0038 19.7 2.3 2 23 160 182 159 182 0.96 7 21 1.3e-06 0.00034 23.0 1.4 1 23 188 211 188 211 0.98 8 21 0.0022 0.56 12.9 0.5 1 23 219 242 219 242 0.97 9 21 0.0024 0.6 12.8 0.1 1 23 262 285 262 285 0.97 10 21 0.035 9 9.1 4.2 1 23 309 332 309 332 0.96 11 21 0.29 75 6.2 0.9 2 22 340 360 339 360 0.94 12 21 0.0043 1.1 11.9 0.8 2 23 369 391 369 391 0.95 13 21 0.0011 0.28 13.8 5.9 1 23 413 436 413 436 0.97 14 21 0.00011 0.028 17.0 1.0 2 23 443 465 442 465 0.96 15 21 0.00016 0.04 16.5 2.5 2 23 472 494 471 494 0.94 16 21 0.00016 0.041 16.5 2.5 1 23 500 523 500 523 0.98 17 21 0.17 44 6.9 6.5 2 23 531 553 531 553 0.94 18 21 0.00014 0.035 16.7 0.8 3 23 562 583 561 583 0.97 19 21 0.02 5.2 9.8 1.9 1 22 590 611 590 613 0.88 20 21 0.0021 0.53 12.9 3.3 5 23 630 649 627 649 0.92 21 21 1.6 4.1e+02 3.9 0.4 1 13 699 711 699 713 0.90
Sequence Information
- Coding Sequence
- ATGTTCCAAAGCCAGCTGGACTATGTCTGCGATTACTGCAGCCGCACATTCACAAGGAAATACAACTTGCAGACTCACATTGAGAACACTCATATAAACTCATCGTGCTATTGTGAGATCTGCGAGCAGACGTTCGGCAGCCCCGCGGGCTTACAACTTCACCTGCACAGAGGCCACAACAGGAACGGCCAACCTTACCCAGAATGCGACATGTGCGGTCGCATATtcacaagaaaacaaaatatcgtGTCCCACATGATCACAGTACACTTGCAGGGATCCGGGCCAGAGATCAAATGCCACCGTTGCAATAAAACATTCACGACTGCGAGGAACTTGAAGAGGCACAAAACTTTACTGCACAACCCCGACGTTGATTATCCAACGTGCGACAGTTGCTTTAAAGTGTTTAAAGGAAAGGGCGCTCTTATATCTCATATACAGTCGGTGCACAGTGGCGGTGCAGAGAAAAGGGTCAAATGCCACCTGTGCGAGAAAATTTACACTAATAACAGGAATCTCAGAAGGCACATAGAAATGTTTCACGGCGAGAGAGAGGAGTTCAGATGTAACATTTGCCCCAAAGCGTACACGTTGAATCAGAGCTTGCGCAGACACATGAAAACGCAGCACTGTAGCGACGACATATACACCTACAACTGTGAATATTGTAATACATCTGTAACAGGCAGAAACAATTTGGATATGCACATAAACTCATTTCACAGATACGATTCCAACTCTGTGGACAATAGTGATGTAATATCTCAGAGAACTCTGGAGTACCCGTGCGCATCTTGCTCAAGATCATTCGAGGACGAACCTCTTCTAAGGCAGCACGTCAAATCGGATCATTCCTTTGAAACCTTCTACGACTATTGTATAAAATCATTGTTGCGTCAAGCCCGTTACGGAAAAGAGGTTTTTCAATGCGAgttttgttcaaataatttcGCTAACGTTTACGATTTCAAACATCACCTGAGGTTCACTCACGATAGGGAGTACTCTCTGTCCACCTGCAATGTGTGCTTCAACAAGTTCTATACTAAGGAAGCCATGAGCGATCACAGGAAGACTTGCTTGCCTCCCGACAACGTCAACTCCTGCAATTACTGCGATAAGTTATTCACAGATGTGTCAAGTTTGGAGTTCCACACACGAATATTCCATCCGCAAGCTCAGCTAGCTGACACGGATATAACGTCCACGAACGCCGACGATCTGGATCACAACTATAAATGTGAGCACTGCGACAGAATTTATTACAGCGACAGGTCATTAAAACACCATATGAAGCTAAAACACACAACGGATCTGGCAATGGAATGCGAATATTGCGGAAAACTGTGCAACAATAAATACTATTTGGCGTCGCACATTAAAATGGTTCACACCAACGTGACGTGGTCGAAGTGCGATTTTTGCGACAAACAGTTCAAGTCCAAAAGGAATATCCGACGCCACATCGAGTACACGCATTTGGGCATGCAAAGGTACAAATGTGTGGAGTGCGAAACGCTTTTCAAGGAGAAGAGGAGTCTTCGCAAGCACTTGAGGACGAAACACCCGAACTCCGTAGCGTTCCCCGAGTGTCATATATGCCACAAGCGTTTCGAGTCGGCGAAGTCGTGCAAAATACATTTGAAGTTGCTGCACTCTGTGAACATGAACACGAATCCGTGCCACCTGTGTTCGATGTCGTTCAGTTCACAGGAGGCGTTGTCTATCCATTTGCAGACGAACCACTTGGCGAAAGACGAGCTCTACAAGTGCGAGGAGTGCAATTTGGTTTTTAAAGGACAGGAGAAATTCGACCATCACAACGAGCTGCGTCACGTCAACCTTTTACCGAACGTGAAGCAGAAGTTGTTGCCTCGTTGCATCCTGTGCACGAAGGACTTTAGCACGCGCAAAACGCTGAAAAGGCACATAAAGAAATTCCACAGCGAGTTCAACGTAGACGAGTTGGCGACCTTCGGTTCGCGACGGAGACATTTCAGTGTGGACTGCGAGGCGTGCATCAAAGTTTTCAACGACGAATCTCACTTCAGCAGCTATCAAAAATTGAAGCATCAAAGGGATTCAGTCGTGTTCCAGTGCGAGGCGTGCACAACTTCCTTCACCACGCTGGAGTACGCCGTACAAAGGTACAAGATGTCTAACGTAGACGCAAGTAAAACTAAAATGATTCTGAGCGAATTGTGCACTACAGAGATGAGTGGTGATGAAACTGGTGTCACTAACTTCGGATACATGCACGAAATGATGGAACCAGTGAGCACAACTAATGATATAATCAAAACGGAGGTTATCGATGTCGACGACATAAAAGCCGAGCCGCTATCTCCTTAG
- Protein Sequence
- MFQSQLDYVCDYCSRTFTRKYNLQTHIENTHINSSCYCEICEQTFGSPAGLQLHLHRGHNRNGQPYPECDMCGRIFTRKQNIVSHMITVHLQGSGPEIKCHRCNKTFTTARNLKRHKTLLHNPDVDYPTCDSCFKVFKGKGALISHIQSVHSGGAEKRVKCHLCEKIYTNNRNLRRHIEMFHGEREEFRCNICPKAYTLNQSLRRHMKTQHCSDDIYTYNCEYCNTSVTGRNNLDMHINSFHRYDSNSVDNSDVISQRTLEYPCASCSRSFEDEPLLRQHVKSDHSFETFYDYCIKSLLRQARYGKEVFQCEFCSNNFANVYDFKHHLRFTHDREYSLSTCNVCFNKFYTKEAMSDHRKTCLPPDNVNSCNYCDKLFTDVSSLEFHTRIFHPQAQLADTDITSTNADDLDHNYKCEHCDRIYYSDRSLKHHMKLKHTTDLAMECEYCGKLCNNKYYLASHIKMVHTNVTWSKCDFCDKQFKSKRNIRRHIEYTHLGMQRYKCVECETLFKEKRSLRKHLRTKHPNSVAFPECHICHKRFESAKSCKIHLKLLHSVNMNTNPCHLCSMSFSSQEALSIHLQTNHLAKDELYKCEECNLVFKGQEKFDHHNELRHVNLLPNVKQKLLPRCILCTKDFSTRKTLKRHIKKFHSEFNVDELATFGSRRRHFSVDCEACIKVFNDESHFSSYQKLKHQRDSVVFQCEACTTSFTTLEYAVQRYKMSNVDASKTKMILSELCTTEMSGDETGVTNFGYMHEMMEPVSTTNDIIKTEVIDVDDIKAEPLSP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01334150;
- 90% Identity
- -
- 80% Identity
- -