Basic Information

Insect: Scirpophaga incertulas
Gene Symbol: -
Assembly: GCA_036419045.1
Location: CM071636.1:9112502-9118557[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 2.5e-07 4.1e-05 25.2 0.3 1 23 155 177 155 177 0.98

2 14 0.0004 0.065 15.1 0.8 1 23 183 206 183 206 0.96

3 14 2.5e-05 0.0041 18.9 0.2 1 23 212 234 212 234 0.98

4 14 7.5e-06 0.0012 20.6 2.7 1 23 240 262 240 262 0.99

5 14 3.7e-05 0.0061 18.4 2.4 1 23 268 290 268 290 0.98

6 14 1.5e-07 2.5e-05 25.9 0.5 1 23 296 319 296 319 0.95

7 14 4.9e-06 0.00081 21.1 1.1 1 23 325 347 325 347 0.98

8 14 1.9e-05 0.0031 19.3 0.9 1 23 353 375 353 375 0.98

9 14 0.00079 0.13 14.2 1.3 1 23 381 403 381 403 0.99

10 14 1.6e-07 2.6e-05 25.9 0.8 1 23 409 431 409 431 0.98

11 14 2e-06 0.00033 22.4 3.4 1 23 437 459 437 459 0.98

12 14 0.062 10 8.2 3.1 1 23 465 484 465 484 0.95

13 14 5.1e-07 8.4e-05 24.2 0.7 1 23 490 512 490 512 0.98

14 14 0.00089 0.15 14.0 3.4 1 23 518 540 518 540 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	2.5e-07	4.1e-05	25.2	0.3	1	23	155	177	155	177	0.98
2	14	0.0004	0.065	15.1	0.8	1	23	183	206	183	206	0.96
3	14	2.5e-05	0.0041	18.9	0.2	1	23	212	234	212	234	0.98
4	14	7.5e-06	0.0012	20.6	2.7	1	23	240	262	240	262	0.99
5	14	3.7e-05	0.0061	18.4	2.4	1	23	268	290	268	290	0.98
6	14	1.5e-07	2.5e-05	25.9	0.5	1	23	296	319	296	319	0.95
7	14	4.9e-06	0.00081	21.1	1.1	1	23	325	347	325	347	0.98
8	14	1.9e-05	0.0031	19.3	0.9	1	23	353	375	353	375	0.98
9	14	0.00079	0.13	14.2	1.3	1	23	381	403	381	403	0.99
10	14	1.6e-07	2.6e-05	25.9	0.8	1	23	409	431	409	431	0.98
11	14	2e-06	0.00033	22.4	3.4	1	23	437	459	437	459	0.98
12	14	0.062	10	8.2	3.1	1	23	465	484	465	484	0.95
13	14	5.1e-07	8.4e-05	24.2	0.7	1	23	490	512	490	512	0.98
14	14	0.00089	0.15	14.0	3.4	1	23	518	540	518	540	0.96

Sequence Information

Coding Sequence: ATGACGGGCAATACTTTGTGCCGCTGTTGCCACGCTGAAGGGGAATTTAAAAATCTCGGTATCACATATCACTTCAATGGAATTGAAGAAGTGTTTTCAGTAATGCTTCGTGATACTTTTAAtgtaaatGTGCTTCCAATGTCACCAGAAGTAGAAAAGTCAACTTATGGTATATGTGGGATGTGTGAGCCTCGTTTGAGAGAAGCTGCATTGTTCAAGCAACAAGTGGTAACATGTGAAGAGAAGCTCATGAAATATTTCAATGATAAAAGTTTTACAGACAGCAATTACCAGTCAGTAGACTTGTTCTCAAAACATGATGAGTTGGACGATCAGCCCCTCTCTGCTCTACGCTCCGATCGGAAAAAGACTGAAAATTCCGATGGCGGTACTGATTGGATAGGCGCCGCTGAACTGAGCGATGACGAGGATAGCAAACCCTTAAAAACAAAGAGCAAAAAGTATTCATGCACTATTTGCGAGAAGGAATTCACGTACAATGGCTCCTTAGAGGTGCATATGCGCGTACACAACGGAGAAAAGTTATACCAGTGCCTGTTATGCGACAATAAGTTTGTTTATAACAAGGAATTAACGAAACACGTAGAAATGAATCACGGCGAAGGCAGTCAATATCCATGTACAATTTGCAGTAAAATATTTGAGAAAGCAAGACTTTTGAAAGCTCATGTTAAGATACACTTTGACAGGCAGAAGTTTAAGTGTAGCTATTGTGAAAAAGAGTTTATGAGGAAGAGAGGACTGAAAGAGCATTTAAAGACACATACAGGAGAAAGAAAATATGCTTGCGACGTCTGCAACAAGTCGTTTGGTCACAGTCAAACATTGAAATCACATAAGCTTACTCATACAGGTGAACGGCCTTACGTTTGTGATATATGTGGAAGAACTTTCCCTCAACGAACTCATTTGAAAAGACACATAGTAATTATACATACAGGTATTAAGCCTTTTACTTGTGATGTTTGTCAGAAGCAGTTCTCAAGTAAAAGCTATCTCGCAATACATGAGAGGCAGCATACAGGTGAACGTCCATTCTCTTGCGATGTTTGTAAAAAAGATTTTACAGCATACACCACATTGAAAGTGCACATGAGAGTCCACACAGGTCTCAAACCTTATTCGTGCAGCTTCTGCAATAGACAGTTTGCTCAGATGGCTGGATTTAAACTACATGAAAGAACTCACACAGGTGAACGGCCGTATTCGTGTAAAGTGTGCAAGAAACCGTTCTCAGACAGCGGTTATTTGAAGGTTCATATGCGATTACATACAGGGGAAAAACCATATTCTTGCGATGTGTGCAAACGGTGCTTCAGGGAGACGGGACAGTTGAAACGGCATATGCGAGTACATACCGGTGAAAAGCCGTACACATGCAAGATATGCAACAAGCAGATTGGCAACCTTTCAAAGCATATGCGTGTGCATTCCAACGACAGACCATACAGTTGTTCTAtttgtaataaacaattttctattAGTGGTAACTTAAAGTTGCATATGAGGATTCATTCTGGCGAGAGACCCTTTTCTTGTGAGCTATGTAATAGTCAGTTTACTCAAAGCAGTGGCCTTAAAAGGCATAAATGTGCTCATGCGCTAAAAGTCGACAGTTGA
Protein Sequence: MTGNTLCRCCHAEGEFKNLGITYHFNGIEEVFSVMLRDTFNVNVLPMSPEVEKSTYGICGMCEPRLREAALFKQQVVTCEEKLMKYFNDKSFTDSNYQSVDLFSKHDELDDQPLSALRSDRKKTENSDGGTDWIGAAELSDDEDSKPLKTKSKKYSCTICEKEFTYNGSLEVHMRVHNGEKLYQCLLCDNKFVYNKELTKHVEMNHGEGSQYPCTICSKIFEKARLLKAHVKIHFDRQKFKCSYCEKEFMRKRGLKEHLKTHTGERKYACDVCNKSFGHSQTLKSHKLTHTGERPYVCDICGRTFPQRTHLKRHIVIIHTGIKPFTCDVCQKQFSSKSYLAIHERQHTGERPFSCDVCKKDFTAYTTLKVHMRVHTGLKPYSCSFCNRQFAQMAGFKLHERTHTGERPYSCKVCKKPFSDSGYLKVHMRLHTGEKPYSCDVCKRCFRETGQLKRHMRVHTGEKPYTCKICNKQIGNLSKHMRVHSNDRPYSCSICNKQFSISGNLKLHMRIHSGERPFSCELCNSQFTQSSGLKRHKCAHALKVDS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01331921;
90% Identity: -
80% Identity: -