Basic Information

Insect: Schoenobius gigantellus
Gene Symbol: -
Assembly: GCA_963935595.1
Location: OZ012550.1:23848400-23853436[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 4.5e-07 0.00011 24.5 0.3 1 23 133 155 133 155 0.98

2 14 0.00024 0.062 15.9 0.9 1 23 161 184 161 184 0.97

3 14 7.4e-05 0.019 17.5 0.2 1 23 190 212 190 212 0.98

4 14 1.1e-06 0.00029 23.2 2.7 1 23 218 240 218 240 0.99

5 14 3.7e-05 0.0095 18.5 2.4 1 23 246 268 246 268 0.98

6 14 1.5e-07 3.9e-05 25.9 0.5 1 23 274 297 274 297 0.95

7 14 1.3e-05 0.0033 19.9 0.8 1 23 303 325 303 325 0.97

8 14 1.9e-05 0.0048 19.4 0.9 1 23 331 353 331 353 0.98

9 14 0.00079 0.2 14.3 1.3 1 23 359 381 359 381 0.99

10 14 1.6e-07 4e-05 25.9 0.8 1 23 387 409 387 409 0.98

11 14 1.9e-06 0.00049 22.5 3.4 1 23 415 437 415 437 0.98

12 14 0.063 16 8.3 3.1 1 23 443 462 443 462 0.95

13 14 9.2e-07 0.00024 23.5 0.7 1 23 468 490 468 490 0.98

14 14 0.00088 0.23 14.1 3.4 1 23 496 518 496 518 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	4.5e-07	0.00011	24.5	0.3	1	23	133	155	133	155	0.98
2	14	0.00024	0.062	15.9	0.9	1	23	161	184	161	184	0.97
3	14	7.4e-05	0.019	17.5	0.2	1	23	190	212	190	212	0.98
4	14	1.1e-06	0.00029	23.2	2.7	1	23	218	240	218	240	0.99
5	14	3.7e-05	0.0095	18.5	2.4	1	23	246	268	246	268	0.98
6	14	1.5e-07	3.9e-05	25.9	0.5	1	23	274	297	274	297	0.95
7	14	1.3e-05	0.0033	19.9	0.8	1	23	303	325	303	325	0.97
8	14	1.9e-05	0.0048	19.4	0.9	1	23	331	353	331	353	0.98
9	14	0.00079	0.2	14.3	1.3	1	23	359	381	359	381	0.99
10	14	1.6e-07	4e-05	25.9	0.8	1	23	387	409	387	409	0.98
11	14	1.9e-06	0.00049	22.5	3.4	1	23	415	437	415	437	0.98
12	14	0.063	16	8.3	3.1	1	23	443	462	443	462	0.95
13	14	9.2e-07	0.00024	23.5	0.7	1	23	468	490	468	490	0.98
14	14	0.00088	0.23	14.1	3.4	1	23	496	518	496	518	0.96

Sequence Information

Coding Sequence: ATGTCAACAGAATTGGGAAAGTCTACTTATGGTATTTGTGGGGTGTGCGAGCCACGATTAAGAGAAGCTGCTTTATTCAAGCAACAAGTGGTGATGTGTGAACAGAAACTCTTCAAATATTACAATGATAACAATTTCAAagATTCGAGGCCATATTTGAAGTTGGTGAAGATAGAACAGGATCAGGAAGATGAGGACAATAGCTATTTGATtgAAAACAAGCAACAACCATCAGGCTTCTTCACAAAACAAGACGAGCTCGACGACCAGCCCCTCTCAACACTCCGCTCTGATCGAAACAAGACGGAGGAATCGGACGATGGCGCCGATTGGACAGGCGCCGCAGAACTGAGCGATGATGAAGACAGCAAACCTCTCAAGACAAAGAGCAAAAAGTACTCGTGCACTGTTTGCGAGAAGGAATTCACGTACAATGGTTCCTTGGAGGTGCACATGCGCGTACACAACGGAGAAAAGATGTACCAGTGCCTGTTATGCGACAATAAATTTGTTTACAACAAGGAGTTAACGAAACACGTCGAAACGAATCACGGGGAAGGCAGCCAATATCCGTGCACGCTCTGCAGTAAAATATTCGAGAAAGCAAGACTTTTGAAGGCTCACGTGAAGATACATTTTGACAGGCAGAAGTTTAAGTGTAGTtattgcaataaagagtttataagGAAGAGAGGATTGAAAGAGCATTTAAAGACTCACACAGGTGAAAGAAAGTATGCTTGTGATGTTTGCAATAAGTCGTTTGGTCACAGCCAAACATTGAAATCACATAAGCTCACGCATACGGGTGAACGGCCTTATGTTTGTGATATATGTGGAAGAACCTTCCCACAAAGAACTCATTTGAAGAGACACATAGTGATTATACATACAGGGGTTAAGCCGTTTTCTTGTGGAGTTtgtcaaaagcagttttcaagtAAAAGTTATCTTGCAATCCATGAGAGGCAGCATACGGGTGAACGTCCTTTCTCTTGTGATGTTTGCAAAAAAGACTTCACGGCGTATACTACGTTAAAAGTGCATATGAGAGTGCACACAGGTCTCAAGCCCTATTCGTGCAGCTTTTGCAACAGACAGTTTGCTCAGATGGCCGGATTTAAACTACATGAGAGAACTCACACAGGCGAACGGCCTTATTCGTGTAAAGTTTGCAAGAAGCCATTCTCGGACAGTGGTTATTTGAAAGTTCATATGCGGCTACATACAGGGGAGAAACCTTATTCGTGTGAGGTGTGCAAACGCTGCTTCAGAGAGACAGGCCAGTTGAAACGGCATATGCGAGTGCACACTGGTGAAAAACCGTACACTTGCAAGATATGTAACAAACAGATTGGCAACCTTTCTAAACACATGCGTGTACATTCCAGTGACAGGCCGTACAGTTGTTCCGTTTGCAATAAGCAATTTTCAATTAGCGGTAACTTAAAGTTGCATATGAGGATACATTCGGGGGAGAGACCCTTTTCTTGCGAGCTATGCAACAGTCAGTTTACGCAGAGCAGCGGTCTTAAAAGGCACAAGTGTGCTCACGCGCAAAAAGTCGACAGTTGA
Protein Sequence: MSTELGKSTYGICGVCEPRLREAALFKQQVVMCEQKLFKYYNDNNFKDSRPYLKLVKIEQDQEDEDNSYLIENKQQPSGFFTKQDELDDQPLSTLRSDRNKTEESDDGADWTGAAELSDDEDSKPLKTKSKKYSCTVCEKEFTYNGSLEVHMRVHNGEKMYQCLLCDNKFVYNKELTKHVETNHGEGSQYPCTLCSKIFEKARLLKAHVKIHFDRQKFKCSYCNKEFIRKRGLKEHLKTHTGERKYACDVCNKSFGHSQTLKSHKLTHTGERPYVCDICGRTFPQRTHLKRHIVIIHTGVKPFSCGVCQKQFSSKSYLAIHERQHTGERPFSCDVCKKDFTAYTTLKVHMRVHTGLKPYSCSFCNRQFAQMAGFKLHERTHTGERPYSCKVCKKPFSDSGYLKVHMRLHTGEKPYSCEVCKRCFRETGQLKRHMRVHTGEKPYTCKICNKQIGNLSKHMRVHSSDRPYSCSVCNKQFSISGNLKLHMRIHSGERPFSCELCNSQFTQSSGLKRHKCAHAQKVDS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01334144;
90% Identity: -
80% Identity: -