Sinc019428.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Scirpophaga incertulas
Gene Symbol
Hr39
Assembly
GCA_036419045.1
Location
CM071633.1:23397511-23429488[+]

Transcription Factor Domain

TF Family
SF-like
Domain
zf-C4|SF-like
PFAM
AnimalTFDB
TF Group
Zinc-Coordinating Group
Description
The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 4 0.66 8.3e+03 -2.7 5.2 76 186 97 224 52 237 0.50
2 4 4 5.1e+04 -7.5 11.2 67 163 202 301 121 327 0.53
3 4 1.1e-07 0.0014 19.6 0.1 1 20 427 446 427 460 0.91
4 4 3.5e-65 4.5e-61 209.0 0.0 163 408 488 745 457 745 0.86

Sequence Information

Coding Sequence
ATGACGAGCGAGTGCGATCCGGTGAAGGTGGAAGGGGTTCACGTCTCAGTCACCACTATCAGCATGTCTGGTCCTGAAACTAATAACGTTCAATTCTCGTATAGCTCGAGTGGCGTCCGCATCAGCGTGTCTTCTGACCCTCACGACGAAGACTCCACCGATGCGGAGATCTCGAAGATAGACTTCACGCAACATCAGAATGAGGTCAACATGCGTAATAAAAAGAAGCGACCTTCAAGCGGGGCGCAGTACGACACGCTCTCCAATGACAGGGAGAGACCAATGTCGTGGGAGGGAGAGCTGTCCGACTCGGAGATGGTGATCGACACGAGCACCCACAACGAAGAAAACTCCCATGACCTGCAATCTTCGCGGGACTCCATCGACACGTTGCGCAATGTCACTATAAAGACGGAACCGCTGAAGGCAGAACCCTACCAGAGCTTGGACGATCAGCGGGTTCTCGACCTGAAGTACCCGTCACCTTTGCAACAGCATCAGCGTAGTCTCAGCATGAACAGGATCTCGGTGCTCACAGAAAACAGTCTCTCACTCCCGCGGCGGCCATCCTCGCCGCAGAGTGCCACTTCCTTGGTGATGTCTGATCAAACCACACACATGCCCCAGGCACTCAGCGAAGTACAAAACTTGACCATCAAGAAGGAACAACTAGCGGATTTAAAATGTGAGCCTACAGTGGGCATGGACAAATTATTGGGCGCTCTACATGGATCTCCACTGCTCGGCAGGCTTCCTCGAGTGCAGTCTAGCGCCAGCACTGACTCCGCGGTACATTCCATGTATACGCACAGCGTGTACAGCAGTCCGTCGGCGAGTCCACGAGCCTCGCGACATTATACTCCGTCCCTATCGCGCAACAATAGCGACGCATCTCATTCCTCCTGCTATTCGTACAGTTCCGAGTTCTCCCCTACGCACTCCCCAGTTCAGgGTCGACATCCTCACGTGGTGTACCGCGAGCCGACGACACACGACGACGATCCTGATGGCAATGATGATAGACTTCATCACCACCAAGGCATCAGCCGGCAACAACTTATCAACAGCCCATGCCCGATATGCGGCGACAAGATCAGCGGTTTCCACTACGGGATCTTCTCGTGCGAATCTTGCAAGGGATTTTTCAAGCGCACAGTCCAAAATCGCAAGAACTACATGTGCCTTCGGGGAGGCAACTGCCCCGTTACAGTCGCTACCAGAAAAAAATGCCCCGCGTGCCGCTTTGACAAGTGTCTAGGATGCGGCATGAAGCTTGAAGCAATCCGCGAGGACAGGACTCGAGGCGGACGCTCGACGTACCAGTGTTCGTATTCGCTGTCGGGGGCCGCGTCTACGGGTTCGCTACTCTCTGCCCACATACCGACTACCCTACGACACGCTTCGAGCCTCACTTGCGTCAACGGTCCAGGCTCATACAATAGCAGAGGGGAGCCGAGTAATAGCCGACTAACGCCTGACATACCACCATTATTACAAgaAATAATGGAAGTGGAACACCTTTGGCAATACAACGAGTCGGAGCTGAGCAGACTCGGCAATTCCCCTAAAAGCCAGGAACCTAACCCGCTGTTAGCTGCAAGTGGAATTACAGCATCTAACTCGAGTCCCGATTTCCTTGCTGATCTGTGCAACATAGCGGATCATAGGCTTTACAAGATTGTCAAGTGGTGCAAGAGCTTGCCTCTCTTCAAGAATATATCGATCGACGACCAGATCTGCCTGCTGATTAACAGCTGGTGCGAATTACTGGTGCTGTCGTGTTGCTACCGCGGGGTTGGCACCCCTGGAGAAGTTCGGGTGGGGGGCGGCCGCGGCATCACTCTGGACCACAGCGCCAAATTGGGCTTGACTCCTTGCATAGAACGAATGCTGAGCTTCACAGACCACCTGAGAAGATTGCGTGTCGATAGATACGAGTACGTTGCGTTGAAGGTCATCGTTCTTCTTACCTCCGATACGCCTGAACTTCGCGAGAGTGAGAAAGTGAGGGCATCCCAAGAGAAGGCGCTCGCCGCACTGCAGGCGTACACGGCGGCCCACTCTCCAGACACGCCGTCCAAGTTTGGCGAACTGCTATTGAGGATACCGGAGTTGCAGCGGACTTGTCAAttttttatgcAAGTCGGCAAAGAGATGCTCAATCCAGCCAATAAAGGCAAAGACGGCGAAGGACCAAGCTTCAATCTTCTGATGGAGTTACTAAGAGGTGACCACTGA
Protein Sequence
MTSECDPVKVEGVHVSVTTISMSGPETNNVQFSYSSSGVRISVSSDPHDEDSTDAEISKIDFTQHQNEVNMRNKKKRPSSGAQYDTLSNDRERPMSWEGELSDSEMVIDTSTHNEENSHDLQSSRDSIDTLRNVTIKTEPLKAEPYQSLDDQRVLDLKYPSPLQQHQRSLSMNRISVLTENSLSLPRRPSSPQSATSLVMSDQTTHMPQALSEVQNLTIKKEQLADLKCEPTVGMDKLLGALHGSPLLGRLPRVQSSASTDSAVHSMYTHSVYSSPSASPRASRHYTPSLSRNNSDASHSSCYSYSSEFSPTHSPVQGRHPHVVYREPTTHDDDPDGNDDRLHHHQGISRQQLINSPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYMCLRGGNCPVTVATRKKCPACRFDKCLGCGMKLEAIREDRTRGGRSTYQCSYSLSGAASTGSLLSAHIPTTLRHASSLTCVNGPGSYNSRGEPSNSRLTPDIPPLLQEIMEVEHLWQYNESELSRLGNSPKSQEPNPLLAASGITASNSSPDFLADLCNIADHRLYKIVKWCKSLPLFKNISIDDQICLLINSWCELLVLSCCYRGVGTPGEVRVGGGRGITLDHSAKLGLTPCIERMLSFTDHLRRLRVDRYEYVALKVIVLLTSDTPELRESEKVRASQEKALAALQAYTAAHSPDTPSKFGELLLRIPELQRTCQFFMQVGKEMLNPANKGKDGEGPSFNLLMELLRGDH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01386822;
90% Identity
iTF_01333991;
80% Identity
iTF_01333991;