Sinc023181.2
Basic Information
- Insect
- Scirpophaga incertulas
- Gene Symbol
- lrrfip2
- Assembly
- GCA_036419045.1
- Location
- CM071635.1:25019208-25035480[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 2e-73 3.3e-69 234.9 26.3 1 295 17 287 17 292 0.89 2 3 1.9 3.1e+04 -4.7 1.1 240 248 870 878 839 905 0.37 3 3 0.51 8.6e+03 -2.8 0.9 21 235 1569 1592 1553 1595 0.45
Sequence Information
- Coding Sequence
- ATGACTGACTTACTACTTATCCGTAACACAGCTGTATTTAATAGTACGGCCGAACAGCGCCTCGCGGCGCGGCGGGCCGCGCGGGCTGAGGCGCGGGAGATCCGCATGCGCGAACTGGAGCGGCAGCAGCGGGAGCAGGAGAACAATGCCGACAAGGCATACGACATGTACGCAGAGACGGTGAGCAGGCGGGGAGGGTCGCGGCTCGCGGCAGCCGGCCTGCACTCGCCGCGTCGGAGCTCAGAGGATTCGGCGGACGACGTCTTCACTGTCAAAGATCTTAGGCATGAAATAAAAGAAGTTGAAGACAAGTTCCGGAAGGCGATGATACTGAACGCGCAGCTGGACAACGACAAGGCCGCGCTCGGCTACCAGCTGGAACTGCTCAAGGACAAGATAGAGGAGTTACAAGAAGAATACGCACAATTACATCGCGAGCACCGCGAGAAGTGCTCGGCGCACGAGCGGCTGAGGCGCGAGCACGTGGCGCTGGAGCGCGagctgagcggcgcgcgcggcgccgTGCGGGCGCGCGacgcggccgccgccgccgcgggcTTCGCGTTCGTGGACGCGGCCGGCGAcgaccccgccgcgccgccgctcGCGCTCGTCTCGCACCAGGCCGAGCAGCTGCTCAACGACGCCGGCGAGGGCACTCTGGACGTTCGGCTGCAGAAGCTACTCAGTTCGAAACAGGCGTTAGAATCCGAAGTGCGGAAGCTTAAATTGCAGCTGAACGACGAACGCGCTGCACGGCAAAACGGCGCTGCGTCACACCTGGACCAGGAGCTGGAGTCGGAGATGGAAACGTTACGGCGGTCGGTGTCCGAGGCTCGGGCGCGAGCCGCGCGCGCCGAGGCCGAGGCCGCGCTGCAGGGCGCCGCCGTGGCGCGCCTGTCCGCGCAGCTGGCGCGGCTCCGCGCGCTCAGCGACACGCGCGACGCGCAGGACGACCAGCTGCAGGCCGAGCGGCGCCGGCTGCAGCGGGAGGGCGCCGCCGTGGCGCGCCTGTCCGCGCAGCTGGCGCGGCTCCGCGCGCTCAGCGACACGCGCGACGCGCAGGACGACCAGCTGCAGGCCGAGCGGCGCCGGCTGCAGCGGGAGGTTGGTACCGCACGCACACACGTGCCGCGCTGCAGGGCGCCGCCGTGGCGCGCCTGTCCGCGCAGCTGGCGCGGCTCCGCGCGCTCAGCGACACGCGCGACGCGCAGGACGACCAGCTGCAGGCCGAGCGGCGCCGGCTGCAGCGGGAGGTTGGTACCGCACGCACACACGTGCCGCGCTGCAGGGCGCCGCCGTGGCGCGCCTGTCCGCGCAGCTGGCGCGGCTCCGCGCGCTCAGCGACACGCGCGACGCGCAGGACGACCAGCTGCAGGCCGAGCGGCGCCGGCTGCAGCGGGAGGTTGGTACCGCACGCACACACGTGCCGCGCTGCAGGGCGCCGCCGTGGCGCGCCTGTCCGCGCAGCTGGCGCGGCTCCGCGCGCTCAGCGACACGCGCGACGCGCAGGACGACCAGCTGCAGGCCGAGCGGCGCCGGCTGCAGCGGAGGTTGGTACCGCACGCACACACGTGCCGCGCTGCAGGGCGCCGCCGTGGCGCGCCTGTCCGCGCAGCTGGCGCGGCTCCGCGCGCTCAGCGACACGCGCGACGCGCAGGACGACCAGCTGCAGGCCGAGCGGCGCCGGCTGCAGCGGGAGGTTGGTACCGCACGCACACACGTGCCGCGCTGCAGGGCGCCGCCGTGGCGCGCCTGTCCGCGCAGCTGGCGCGGCTCCGCGCGCTCAGCGACACGCGCGCGACGCGCAGGACGACCAGCTGCAGGCCGAGCGGCGCCGGCTGCAGCGGGAGTTGGTACCGCACGCACACACGTGCCGCGCTGCAGGGCGCCGCCGTGGCGCGCCTGTCCGCGCAGCTGGCGCGGCTCCGCGCGCTCAGCGACACGCGCGACGCGCAGGACGACCAGCTGCAGGCCGAGCGGCGCCGGCTGCAGCGGGAGGTTGGTACCGCACGCACACACGTGCCGCGCTGCAGGGCGCCGCCGTGGCGCGCCTGTCCGCGCAGCTGGCGCGGCTCCGCGCGCTCAGCGACACGCGCGACGCGCAGGACGACCAGCTGCAGGCCGAGCGGCGCCGGCTGCAGCGGGAGGTGGTACCGCACGCACACACGTGCCGCGCTGCAGGGCGCCGCCGTGGCGCGCCTGTCCGCGCAGCTGGCGCGGCTCCGCGCGCTCAGCGACACGCGCGACGCGCAGGACGACCAGCTGCAGGCCGAGCGGCGCCGGCTGCAGCGGGAGGTTGGTACCGCACGCACACACGTGCGCGCTGCAGGGCGCCGCCGTGGCGCGCCTGTCCGCGCAGCTGGCGCGGCTCCGCGCGCTCAGCGACACGCGCGACGCGCAGGACGACCAGCTGCAGGCCGAGCGGCGCCGGCTGCAGCGGGAGGTTGGTACCGCACGCACACACGTGCCGCGCTGCAGGGCGCCGCCGTGGCGCGCCTGTCCGCGCAGCTGGCGCGGCTCCGCGCGCTCAGCGACACGCGCGACGCGCAGGACGACCAGCTGCAGGCCGAGCGGCGCCGGCTGCAGCGGGAGGGCGCCGCCGTGGCGCGCCTGTCCGCGCAGCTGGCGCGGCTCCGCGCGCTCAGCGACACGCGCGACGCGCAGGACGACCAGCTGCAGGCCGAGCGGCGCCGGCTGCAGCGGGAGGTTGGTACCGCACGCACACACGTGCCGCGCTGCAGGGCGCCGCCGTGGCGCGCCTGTCCGCGCAGCTGGCGCGGCTCGCGCGCTCAGCGACACGCGCGACGCGCAGGACGACCAGCTGCAGGCCGAGCGGCGCCGGCTGCAGCGGGAGGTTGGTACCGCACGCACACACGTGCCGCGCTGCAGGGCGCCGCCGTGGCGCGCCTGTCCGCGCAGCTGGCGCGGCTCCGCGCGCTCAGCGACACGCGCGACGCGCAGGACGACCAGCTGCAGGCCGAGCGGCGCCGGCTGCAGCGGGAGGTTGGTACCGCACGCACACACGTGCCGCGCTGCAGGGCGCCGCCGTGGCGCGCCTGTCCGCGCAGCTGGCGCGGCTCCGCGCGCTCAGCGACACGCGCGACGCGCAGGACGACCAGCTGCAGGCCGAGCGGCGCCGGCTGCAGCGGGAGGTTGGTACCGCACGCACACACGTGCCGCGCTGCAGGGCGCCGCCGTGGCGCGCCTGTCCGCGCAGCTGGCGCGGCTCCGCGCGCTCAGCGACACGCGCGACGCGCAGGACGACCAGCTGCAGGCCGAGCGGCGCCGGCTGCAGCGGGAGGTTGGTACCGCACGCACACACGTGCCGCGCTGCAGGGCGCCGCCGTGGCGCGCCTGTCCGCGCAGCTGGCGCGGCTCCGCGCGCTCAGCGACACGCGCGACGCGCAGGACGACCAGCTGCAGGCCGAGCGGCGCCGGCTGCAGCGGGAGGTTGGTACCGCACGCACACACGTGCCGCCGCGCTGCAGGGCGCCGCCGTGGCGCGCCTGTCCGCGCAGCTGGCGCGGCTCCGCGCGCTCAGCGACACGCGCGACGCGCAGGACGACCAGCTGCAGGCCGAGCGGCGCCGGCTGCAGCGGGAGGTTGGTACGCACGCACACACGTGCCGCGCTGCAGGGCGCCGCCGTGGCGCGCCTGTCCGCGCAGCTGGCGCGGCTCCGCGCGCTCAGCGACACGCGCGACGCGCAGGACGACCAGCTGCAGGCCGAGCGGCGCCGGCTGCAGCGGGAGGTTGGTACCGCACGCACACACGTGCCGCGCTGCAGGGCGCCGCCGTGGCGCGCCTGTCCGCGCAGCTGGCGCGGCTCCGCGCGCTCAGCGACACGCGCGACGCGCAGGACGACCAGCTGCAGGCCGAGCGGCGCCGGCTGCAGCGGGAGGTTGGTACCGCACGCACACACACGTGCCGCGCTGCAGGGCGCCGCCGTGGCGCGCCTGTCCGCGCAGCTGGCGCGGCTCCGCGCGCTCAGCGACACGCGCGACGCGCAGGACGACCAGCTGCAGCCGAGCGGCGCCGGCTGCAGCGGGAGGTTGGTACCGCACGCACACACGTGCCGCGCTGCAGGGCGCCGCCGTGGCGCGCCTGTCCGCGCAGCTGGCGCGGCTCCGCGCGCTCAGCGACACGCGCGACGCGCAGGACGACCAGCTGCAGGCCGAGCGGCGCCGGCTGCAGCGGGAGGTTGGTACCGCACGCACACACGTGCCGCGCTGCAGGGCGCCGCCGTGGCGCGCCTGTCCGCGCAGCTGGCGCGGCTCCGCGCGCTCAGCGACACGCGCGACGCGCAGGACGACCAGCTGCAGGCCGAGCGGCGCCGGCTGCAGCGGGAGGTTGGTACCGCACGCACACACGTGCCGCGCTGCAGGGCGCCGCCGTGGCGCGCCTGTCCGCGCAGCTGGCGCGGCTCCGCGCGCTCAGCGACACGCGCGACGCGCAGGACGACCAGCTGCAGGCCGAGCGGCGCCGGCTGCAGCGGGAGGTTGGTACCGCACGCACACACGTGCCGCGCTGCAGGGCGCCGCCGTGGCGCGCCTGTCCGCGCAGCTGGCGCGGCTCCGCGCGCTCAGCGACACGCGCGACGCGCAGGACGACCAGCTGCAGGCCGAGCGGCGCCGGCTGCAGCGGGAGGTTGGTACCGCACGCACACACGTGCCGCGCGCGCTCGGGAGGCACTCAACCGGGTTGAGGAGTTGGAGACGGAGAACAGCCACTTAACGAAGCGGCTGGACAAGCTCAAGAACGCCAAGTCAGCCCTGCTCAAAGACCTGTGA
- Protein Sequence
- MTDLLLIRNTAVFNSTAEQRLAARRAARAEAREIRMRELERQQREQENNADKAYDMYAETVSRRGGSRLAAAGLHSPRRSSEDSADDVFTVKDLRHEIKEVEDKFRKAMILNAQLDNDKAALGYQLELLKDKIEELQEEYAQLHREHREKCSAHERLRREHVALERELSGARGAVRARDAAAAAAGFAFVDAAGDDPAAPPLALVSHQAEQLLNDAGEGTLDVRLQKLLSSKQALESEVRKLKLQLNDERAARQNGAASHLDQELESEMETLRRSVSEARARAARAEAEAALQGAAVARLSAQLARLRALSDTRDAQDDQLQAERRRLQREGAAVARLSAQLARLRALSDTRDAQDDQLQAERRRLQREVGTARTHVPRCRAPPWRACPRSWRGSARSATRATRRTTSCRPSGAGCSGRLVPHAHTCRAAGRRRGAPVRAAGAAPRAQRHARRAGRPAAGRAAPAAAGGWYRTHTRAALQGAAVARLSAQLARLRALSDTRDAQDDQLQAERRRLQRRLVPHAHTCRAAGRRRGAPVRAAGAAPRAQRHARRAGRPAAGRAAPAAAGGWYRTHTRAALQGAAVARLSAQLARLRALSDTRATRRTTSCRPSGAGCSGSWYRTHTRAALQGAAVARLSAQLARLRALSDTRDAQDDQLQAERRRLQREVGTARTHVPRCRAPPWRACPRSWRGSARSATRATRRTTSCRPSGAGCSGRWYRTHTRAALQGAAVARLSAQLARLRALSDTRDAQDDQLQAERRRLQREVGTARTHVRAAGRRRGAPVRAAGAAPRAQRHARRAGRPAAGRAAPAAAGGWYRTHTRAALQGAAVARLSAQLARLRALSDTRDAQDDQLQAERRRLQREGAAVARLSAQLARLRALSDTRDAQDDQLQAERRRLQREVGTARTHVPRCRAPPWRACPRSWRGSRAQRHARRAGRPAAGRAAPAAAGGWYRTHTRAALQGAAVARLSAQLARLRALSDTRDAQDDQLQAERRRLQREVGTARTHVPRCRAPPWRACPRSWRGSARSATRATRRTTSCRPSGAGCSGRLVPHAHTCRAAGRRRGAPVRAAGAAPRAQRHARRAGRPAAGRAAPAAAGGWYRTHTRAALQGAAVARLSAQLARLRALSDTRDAQDDQLQAERRRLQREVGTARTHVPPRCRAPPWRACPRSWRGSARSATRATRRTTSCRPSGAGCSGRLVRTHTRAALQGAAVARLSAQLARLRALSDTRDAQDDQLQAERRRLQREVGTARTHVPRCRAPPWRACPRSWRGSARSATRATRRTTSCRPSGAGCSGRLVPHAHTRAALQGAAVARLSAQLARLRALSDTRDAQDDQLQPSGAGCSGRLVPHAHTCRAAGRRRGAPVRAAGAAPRAQRHARRAGRPAAGRAAPAAAGGWYRTHTRAALQGAAVARLSAQLARLRALSDTRDAQDDQLQAERRRLQREVGTARTHVPRCRAPPWRACPRSWRGSARSATRATRRTTSCRPSGAGCSGRLVPHAHTCRAAGRRRGAPVRAAGAAPRAQRHARRAGRPAAGRAAPAAAGGWYRTHTRAARAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -