Scos038709.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Schrankia costaestrigalis
Gene Symbol
-
Assembly
GCA_905475405.1
Location
FR997852.1:11067006-11073212[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 30 0.0044 0.54 12.1 0.6 1 23 117 140 117 140 0.94
2 30 4.2e-06 0.00052 21.6 2.2 1 23 146 168 146 168 0.99
3 30 8.7 1.1e+03 1.7 0.4 2 23 172 193 172 193 0.90
4 30 0.23 29 6.7 2.4 1 23 198 221 198 221 0.95
5 30 1.1 1.3e+02 4.6 0.2 2 23 280 302 279 302 0.95
6 30 0.026 3.2 9.7 2.1 1 23 308 331 308 331 0.93
7 30 0.043 5.3 9.0 1.6 2 23 620 642 619 642 0.96
8 30 0.024 3 9.8 0.6 1 23 648 671 648 671 0.94
9 30 0.0069 0.85 11.5 1.3 2 21 675 694 674 695 0.92
10 30 0.036 4.5 9.2 0.6 1 23 703 726 703 726 0.95
11 30 2.8 3.5e+02 3.3 0.7 1 23 731 754 731 754 0.94
12 30 0.01 1.2 11.0 0.1 2 23 767 788 766 788 0.96
13 30 0.05 6.1 8.8 0.6 1 23 794 816 794 816 0.96
14 30 2.6 3.2e+02 3.4 5.2 1 23 853 875 853 875 0.95
15 30 0.023 2.8 9.8 0.1 2 23 880 901 879 901 0.93
16 30 0.45 56 5.8 1.6 1 23 1309 1332 1309 1332 0.96
17 30 1.9 2.3e+02 3.8 1.4 1 23 1405 1428 1405 1428 0.96
18 30 0.04 4.9 9.1 0.6 1 23 1570 1593 1570 1593 0.93
19 30 6.7e-05 0.0083 17.8 3.2 1 23 1598 1620 1598 1620 0.98
20 30 2.6 3.2e+02 3.4 0.4 2 23 1624 1645 1624 1645 0.95
21 30 0.0023 0.28 13.0 1.2 1 23 1650 1673 1650 1673 0.95
22 30 0.095 12 7.9 2.3 2 23 1732 1754 1731 1754 0.93
23 30 0.024 3 9.8 1.5 1 23 1760 1783 1760 1783 0.94
24 30 0.0018 0.22 13.3 1.0 2 21 1787 1806 1786 1807 0.92
25 30 0.047 5.8 8.9 1.7 1 23 1815 1838 1815 1838 0.95
26 30 1.8 2.2e+02 3.9 1.2 1 23 1843 1866 1843 1866 0.91
27 30 0.024 3 9.8 0.6 2 23 1878 1899 1877 1899 0.96
28 30 0.0071 0.88 11.4 0.6 1 23 1905 1927 1905 1927 0.97
29 30 0.00013 0.016 16.9 0.7 1 23 1966 1988 1966 1988 0.98
30 30 0.033 4 9.4 1.2 2 23 1993 2014 1993 2014 0.92

Sequence Information

Coding Sequence
ATGACTGAAATTATACCAACGGCAACAGCTATAGCCATTAAAATGCCACAGCCTATTATTGAACCTAAAGAAGAAAATAACCTTATAGAAGATGAAGTACAAGAATCAACATTTTTAGATGAAGAACTAGTTAAAACTGTACCACATTTAAAAGTAAAGAAATTAATTGTTACAAAAGTAGagacaaaaaataaagttattaaaccTAAAAATAGCATAAAGACTCCAAAAggtattaaaatagttaaaagcaAGACTGTATCAACACCTAACATTACACTAAAAGAAGGACATATAGTTATAAAACCATTGCGTTCATCAAGGAACCTTACTCCTCACTATAACACATATAACTGTGATATTTGTTCTATAATATTTACAACATATAAAACACTAAAGGAACATGCGAAGGCTAAACATGACAAGTCCGAAGTGTTCCGATGCAACTTGTGTGATAAATCATATAGTTCTAGACAAAATTTAAACATACATTACAACACTCATGGAAAAGCAAAATGTAAATTTTGCCAACAAGTATTGCCCGATGGAGAACTTATGGAACATTTACGAACTAACCATGAGCATTTAGTGTTCCCGTGTAAATTCTGTGATTTAATATGTTATTCACTAAATTCTTTACAGacacattttaatataaatcatttaaaaatcaatagCAAAGCTAAATCACAATGTGTTATGTGTGTCAGGAAATTTAAAGATGTAAAGAAACATAAATGTAAGTTTGCATGTTCAGAGTGCTTTGTGATGCCATGTCtccattataaatatttaatgtcaTATAGAGACCAAACATTAAATCATGCAAACAAAGTCAAGTGTGTAGACTGTGATTATGTAACAAGTTGGAAAAGACAGTTGATTGGTCATGTAAacagaaaacacttagaccatcATCCATTTACTTGTGCAGATTGTGCACAACAGTTTTATACAAAAAGGAGCTTAAAGATACACATAGTACAGTGCCATCAAGATCTAAACTGTGAAACACCTATAGCCATGACAATGAAAATGCCACTGCCTATTATTGAACCTAAAAAAGGAAAAACCCTTTTTGTAGATGAAATACAAGAATCAACATTTCTAACTGAAATTGTACCAACAGCAACACCTGTAACGATGACAATGAAAATGCCACGGCCTATTATTGTACCTAAACACGAAAATAACCTTATTGTAGATGAAATACAAGAATCAACATTTCTAATTGAAATTGTACCAACAGCAACACCTGTAACGATGACAATGGAAATGCCACGGCCTATTATTGTACCTAAACACGAAAATAACCTTATTGTAGATGAAATACAAGAATCAACATTTCTAACTGAAATTGTACCAACAGCAACACCTGTAACGATGACAATGGAAATGCCACGGCCAATTATTGTACCTAAACACGAAAATAACCTTATTGTAGATGAAATACAAGAATCAACATTTTTAACTGAAATTGTATCAACAGCAACACCTATAACAATGACAATGGAAATGATGGAAATCCCACGGCCTATTATTGTACCTAAAGACGAAAATAACCTTATTGTAGATGAAATACAAGAATCAACATTTCTACCTGAAATTGTACCAACAGCAACACCTGTAACGATGACAATGGAAATGCCACGGCCTATTATTGTacctaaaaaagaaaataacctGATTGGAGGTAATGACCAATGTATTATGTGTCTAGGAAATTTTAAAGAAGttgaaaatgtaaataaacataaatgtaaGTTTGCATGTTCAGAGTGCTTTGTGATGCCATGTCTTCATTATAAATACTTAATGTCATACAGAGAGCAAACTTTAAATCATGCAAACAAAGTCAAGTGTGTAGACTGTCATTATGTAACGAGTTTGAAAGTACATTTGATCAGTCATGTAAACAGAGAACACTTAGACCATCATCCGTTTACTTGTGCAGATTGTGCACAACAGTTTTATACAAAATTGAGCTTAAAGAGTCATATAGCACTGTTCCATCTAGATCTAAACTGTAAATTTTGTGATTTTGTATTCAAAAATAGAAAGACTTTGGAAAGTCataaaaaagtttgtaaaacTGTAACTAGGGCATTTATTTGCAACCATTGTTCAGCGTCATTTGATATGGAGGAAGAACTTAGCACTCACGTGAACTTAAGACACAGCGAAAGTGTTTATGCATGTAATCTATGCAAGAGTAAGTTCTTGACTAATATAGAATTAGAGGAACATCACGCTAGAGTCCACGGAGGTATACAATATAAGCAACACAGGAAACACATTGAGTGTTCTGTATGTGacataatgtttaataatatcaaagaacTGCTTGAACACGAGAAGTCCCATGAACCCAATGAAATATACCCATGTAGAGTATgttcaaaacaatttaataGTTTAATTAAGCTCTATATACACAATAGGGCGCACCTAAAAATAAAGTGTAATGGTTGTAACATCAAAGTTGCAACGTCGTTTTTTCCAAGACATGAAGTTAGATGTCGGTACAAACGACAATCGCCTCTGTCTGACAAATTTTATCTTTGTGAAGTTTGTGGCAGttcatttcattttctatcGTCACTTCGGTGTCATCAGAGATTTCATTCGGACAAGGTACCATGCCCTGAATGTGATAAAAGGCTGAAACCGAACTACCTTAAGCGACATATAGAGCAAGTACACAGATTGGCAAGAAAAAGAGAACGAAAGTTATGTCGAATAAAACAAGTTATGTCAATATTACCAACAGCAACACCTATAGCCATAACAATGGAAATGCCACGGCCTATTATGGATCCTGAACCTACAGATGAAAATAACCTTATAGAAAATGCAATACAAGAATCAACATTTTTAACTGAAATTGCACCAACAGCAACACCTATAGCCATGACAGTGGAAATGCCACGGCCTATTATTGAAACTAAAGCAGAAAATAACCTTATTGAAGATCAAGCACAAGAATCGACATTTTTAACTGAAATTGTACCAACAGCAACACCTATAGCCATGACAGTGGAAATGCCACGGCCTATTATTGAAACTAAAGCAGAAAATAACCTTATTGAAGATCAAGCACAAGAATcgacatttttaactaaaattgtACCAACAGCAACACCTATAGCCATGACAGTGGAAATGGCACGGCCTATTATGGAACCTGAACCTATAGAAGAAAATAACCCTATAGAAAATGCAATACATGAAAAGACATTTTTAACTAGAATTGTTCCAACAGCAACACCTATGGCTATGGCAGTGGAAATGCCACGACCTATTATGGAACCTGAACCTACAGAAGAAAATAACCTTATAGGAAATGCAATACAAGAATCAACATTTTTAACTGAAATTGCACCAACAGCAACACCTATAGCCATGACAATGGAAATGCCACGGCCTATTATGGATCCTGAACCTACAGAAGAAAATAACCTTATAGAAAATGCAATACAAGAATCAACATTTTTAACTGAAATTGCGCCAACAGCAACACCTATAGCCATGACAGTGGAAATGCCACGGCCTATTACTGAAACTAAAGCAGAAAATAACCTTATTGAAGATCAAGCACAAGAATTAACATTTTTAACTGAAATTGAACCAACAGCAACACCTAGAGCCATGATAATGGAAATGCCACGGCCTATTATTGAAACTAAAGCAGAAAATAACCTTATTGAAGATCAAGTACAAGAATCAACATTTTTAACTGGAAGTGTACCAACAGCAACACCTATAGCCATGACAGTGGAAATGCCACGGCCTATTATGGAACCTGAACCTACAGAAGAAAATAACATTATTGAAGAAGAAGTACAAGAATCAACATTTTTAACTGAAATTGTACCGTCGGCAACACCTACAGTTAAGACAATGGAAATGCCACcccttattttttattcatgtaATCTATGCaagagtttttttattactattatagaCTTAAATGAGCATCACACGAAAGTTCATGGAGGAGATAAAGTACAGGAATCAACATTTTTAACTGAAATTGCACCAACGGCTAAACCTATTGTCATGGCAGTGGCAACGCCACGGCCTATTATTGAACCTACAGAAGTAAATAACCTTATTGAAGATAAAGCACAAGAATCAACATTTTTGACTGAAATTGTATCAACAGAAACACCTACAGTCAAGACAATGGAAATGCCAGGGCTTACTTTTTATGCATGTAATCTATGCAAGAGTATGTTTTTGACTAGTATAGAATTAGAGGAACATCACATGAAATTCCATAGAGTAGATAAAGTACTAGAATCAACATTTTTAACTGAAATTGCATCAACGGCAAAACCTATTGTCAAGGCAATGGAAATTCCACGGCCTATTATTGAACCTACAGAAGAAAATAACCTAAATGAAGTACAAGAATCAACATTTTTAACTGAAATTGCACCAACGGCAAAACCTATTGTCAAGGCAATGGAAATTCCACAGCCTATTACTGAACCTACAGACGAATCTGATGAAACTGTAGCACGTATGGAGCCAAGAAATAGAGTTATTGAACCCGAAGATAGTCTGCAGACTTCAAAAGATATTAAAATAGTTGAAAGCAAAATTGTATCAACACCCAACATTACCCTAAAGGAAGGACATATAGTTATAAAACCATTGAGTTTATCTAGGAATAACCACCGTGCTCCTCTCTATAACACATATGACTGTGCCAATTGTTCTGAAATATTTACATCATATAGAACACTAAAGGAACATGAGAAAGCTAAACATAAAAAGTCTGTGTTCCCATGCAACTGGTGTGataaaacttataataaaaGATATGATCTACACATACATTATAGGACTCATGGAAAAGCAAAATGTAAATTTTGCCAACAAGTATTGCCTGAAGGGGAACTTATGGAACATTTAAGAACTAACCATCCTAAATCAGGACACCCGTGTAAATTATGTGATTTAGTATATTATTCGAAAGATTCTTTACTGACACATTTAAAGTTAAGTCATACAGTAAACATGACTAAAGGTAAATCACAATGTGTTATGTGTGTCAGGAAATTTAAAGATATAAAGAAACATAAATGTAAGTTTGCATGTTCAGAGTGCTTTGAGATGCCATGTCTacattataagtatttaatgtCATATAGAGACCAAATATTAAATCATGCAAACAAAGTGAAGTGTATAGACTGTCATTATGTAACGAGTACGAAAGTACATTTGATCAGTCATGTAAACAGATACCACTTAGATCATCATCCGTTTACTTGTGCAGATTGTGCACAACAGTTTCATACAAAAGTGAGCTTAAAGAGTCACATAGCACAGTTCCATCAAGGTCTAAACTGTGAATTTTGTGATTTTGTATTCAAAAATAGTAATACTTTGAAAAGGCATAAGAAAGTTTGTAAAACTATTACCAGGGCATTTATTTGCCATCATTGTTCAGCATCATTTGATATGGAGGAAGAACTTAGCACTCATGTGAACTTAAGACACAACGAAAGTGTTTATGCATGTAATCTATGCAAGAGTAAGTTCTTGACTAATATAGAATTACAGGAACATCACATTAAAGTACATggaagtaaatataataaacgcTGGAAACACATTGAGTGTTCGTTATgtgacataatgtttcataataCCAAAGAATTGATTGAACATGAGAAGTCCCATAAACCCGATGAAATATACCCATGTAGAGTATGTCCGAAACAATTTAATAGTTTAATGCAGCTCTACATCCACAATCAGAGGCACTATACTAAAAGGGTTAGGTGTAATCGTTGTAAGGGTAAAGTTTCTGCATCGTTCTTTCCGCAGCATGCATTTAGATGTCGGTACAAAAAACAATTAGCTGGGActgttaaattttatgtttgtgaAGTCTGCTGGAAATTATTTCGTTTTCAATCAGCGCTTCGATATCATCAGAAAATTCATTTGGAGAAGGAACAATGCCATTTATGTGATAAAAGCTTCAAACCATCCATCCTAAACCAGCATATAGAGAAAGCACACGGAttgccaaataaagaaaaaaagttatgtaaaaTAGAAAAAGTTATGTCAATATTACCTTCAATTGTACCAACAGCAACACCTATAGCCACGGCAATGGAAATGCCACAGCCTATTATTGAACCAACAGAAGAAAACAACCTTATTGAAGATAAAGTAGAGTAA
Protein Sequence
MTEIIPTATAIAIKMPQPIIEPKEENNLIEDEVQESTFLDEELVKTVPHLKVKKLIVTKVETKNKVIKPKNSIKTPKGIKIVKSKTVSTPNITLKEGHIVIKPLRSSRNLTPHYNTYNCDICSIIFTTYKTLKEHAKAKHDKSEVFRCNLCDKSYSSRQNLNIHYNTHGKAKCKFCQQVLPDGELMEHLRTNHEHLVFPCKFCDLICYSLNSLQTHFNINHLKINSKAKSQCVMCVRKFKDVKKHKCKFACSECFVMPCLHYKYLMSYRDQTLNHANKVKCVDCDYVTSWKRQLIGHVNRKHLDHHPFTCADCAQQFYTKRSLKIHIVQCHQDLNCETPIAMTMKMPLPIIEPKKGKTLFVDEIQESTFLTEIVPTATPVTMTMKMPRPIIVPKHENNLIVDEIQESTFLIEIVPTATPVTMTMEMPRPIIVPKHENNLIVDEIQESTFLTEIVPTATPVTMTMEMPRPIIVPKHENNLIVDEIQESTFLTEIVSTATPITMTMEMMEIPRPIIVPKDENNLIVDEIQESTFLPEIVPTATPVTMTMEMPRPIIVPKKENNLIGGNDQCIMCLGNFKEVENVNKHKCKFACSECFVMPCLHYKYLMSYREQTLNHANKVKCVDCHYVTSLKVHLISHVNREHLDHHPFTCADCAQQFYTKLSLKSHIALFHLDLNCKFCDFVFKNRKTLESHKKVCKTVTRAFICNHCSASFDMEEELSTHVNLRHSESVYACNLCKSKFLTNIELEEHHARVHGGIQYKQHRKHIECSVCDIMFNNIKELLEHEKSHEPNEIYPCRVCSKQFNSLIKLYIHNRAHLKIKCNGCNIKVATSFFPRHEVRCRYKRQSPLSDKFYLCEVCGSSFHFLSSLRCHQRFHSDKVPCPECDKRLKPNYLKRHIEQVHRLARKRERKLCRIKQVMSILPTATPIAITMEMPRPIMDPEPTDENNLIENAIQESTFLTEIAPTATPIAMTVEMPRPIIETKAENNLIEDQAQESTFLTEIVPTATPIAMTVEMPRPIIETKAENNLIEDQAQESTFLTKIVPTATPIAMTVEMARPIMEPEPIEENNPIENAIHEKTFLTRIVPTATPMAMAVEMPRPIMEPEPTEENNLIGNAIQESTFLTEIAPTATPIAMTMEMPRPIMDPEPTEENNLIENAIQESTFLTEIAPTATPIAMTVEMPRPITETKAENNLIEDQAQELTFLTEIEPTATPRAMIMEMPRPIIETKAENNLIEDQVQESTFLTGSVPTATPIAMTVEMPRPIMEPEPTEENNIIEEEVQESTFLTEIVPSATPTVKTMEMPPLIFYSCNLCKSFFITIIDLNEHHTKVHGGDKVQESTFLTEIAPTAKPIVMAVATPRPIIEPTEVNNLIEDKAQESTFLTEIVSTETPTVKTMEMPGLTFYACNLCKSMFLTSIELEEHHMKFHRVDKVLESTFLTEIASTAKPIVKAMEIPRPIIEPTEENNLNEVQESTFLTEIAPTAKPIVKAMEIPQPITEPTDESDETVARMEPRNRVIEPEDSLQTSKDIKIVESKIVSTPNITLKEGHIVIKPLSLSRNNHRAPLYNTYDCANCSEIFTSYRTLKEHEKAKHKKSVFPCNWCDKTYNKRYDLHIHYRTHGKAKCKFCQQVLPEGELMEHLRTNHPKSGHPCKLCDLVYYSKDSLLTHLKLSHTVNMTKGKSQCVMCVRKFKDIKKHKCKFACSECFEMPCLHYKYLMSYRDQILNHANKVKCIDCHYVTSTKVHLISHVNRYHLDHHPFTCADCAQQFHTKVSLKSHIAQFHQGLNCEFCDFVFKNSNTLKRHKKVCKTITRAFICHHCSASFDMEEELSTHVNLRHNESVYACNLCKSKFLTNIELQEHHIKVHGSKYNKRWKHIECSLCDIMFHNTKELIEHEKSHKPDEIYPCRVCPKQFNSLMQLYIHNQRHYTKRVRCNRCKGKVSASFFPQHAFRCRYKKQLAGTVKFYVCEVCWKLFRFQSALRYHQKIHLEKEQCHLCDKSFKPSILNQHIEKAHGLPNKEKKLCKIEKVMSILPSIVPTATPIATAMEMPQPIIEPTEENNLIEDKVE*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01333135;
90% Identity
iTF_01333135;
80% Identity
-