Scos038713.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Schrankia costaestrigalis
Gene Symbol
-
Assembly
GCA_905475405.1
Location
FR997852.1:11104047-11109749[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 30 0.004 0.49 12.2 0.6 1 23 112 135 112 135 0.94
2 30 3.8e-06 0.00047 21.7 2.2 1 23 141 163 141 163 0.99
3 30 7.9 9.8e+02 1.8 0.4 2 23 167 188 167 188 0.90
4 30 0.21 26 6.8 2.4 1 23 193 216 193 216 0.95
5 30 2.8 3.4e+02 3.3 0.2 2 23 275 297 274 297 0.95
6 30 0.0093 1.2 11.1 3.0 1 23 303 326 303 326 0.93
7 30 0.039 4.8 9.1 1.6 2 23 618 640 617 640 0.96
8 30 0.022 2.7 9.9 0.6 1 23 646 669 646 669 0.94
9 30 0.0063 0.78 11.6 1.3 2 21 673 692 672 693 0.92
10 30 0.033 4.1 9.3 0.6 1 23 701 724 701 724 0.95
11 30 2.6 3.2e+02 3.4 0.7 1 23 729 752 729 752 0.94
12 30 0.0091 1.1 11.1 0.1 2 23 765 786 764 786 0.96
13 30 0.045 5.6 8.9 0.6 1 23 792 814 792 814 0.96
14 30 0.0058 0.72 11.7 2.7 1 23 851 873 851 873 0.95
15 30 0.073 9.1 8.2 0.1 2 23 878 899 877 899 0.92
16 30 0.57 70 5.5 1.0 1 23 1141 1164 1141 1164 0.95
17 30 2.8 3.4e+02 3.3 1.1 1 23 1237 1260 1237 1260 0.95
18 30 0.036 4.5 9.2 0.6 1 23 1402 1425 1402 1425 0.93
19 30 6.1e-05 0.0076 17.9 3.2 1 23 1430 1452 1430 1452 0.98
20 30 2.4 2.9e+02 3.5 0.4 2 23 1456 1477 1456 1477 0.95
21 30 0.002 0.24 13.2 0.9 1 23 1482 1505 1482 1505 0.95
22 30 0.087 11 8.0 2.3 2 23 1564 1586 1563 1586 0.93
23 30 0.022 2.7 9.9 1.5 1 23 1592 1615 1592 1615 0.94
24 30 0.0021 0.26 13.1 1.2 2 21 1619 1638 1618 1639 0.92
25 30 0.043 5.3 9.0 1.7 1 23 1647 1670 1647 1670 0.95
26 30 1.6 2e+02 4.0 1.2 1 23 1675 1698 1675 1698 0.91
27 30 0.022 2.7 9.9 0.6 2 23 1710 1731 1709 1731 0.96
28 30 0.0065 0.8 11.6 0.6 1 23 1737 1759 1737 1759 0.97
29 30 0.00012 0.014 17.0 0.7 1 23 1798 1820 1798 1820 0.98
30 30 0.0088 1.1 11.1 1.0 2 23 1825 1846 1825 1846 0.92

Sequence Information

Coding Sequence
ATGACTGAAATTATACCAACGGCAACAGCTATAGCCATTAAAATGCCACAGCCTATTATTGAACCTAAAGAAGAAAATAACCTTATAGAAGATGAAGTACAAGAATCAACATTTTTAGATGAAGAACTAGTTAAAACTGTACCACATTTAAAAGTAAAGAAATTAATTGTTACAAAAGTAGagacaaaaaataaagttattaaaccTAAAAATAGCATAAAGACTCCAAAAggtattaaaatagttaaaagcaAGACTGTATCAACACCTAACATTACACTAAAAGAAGGACATATAGTTATAAAACCATACCTTACTCCTCACTATATCACATATAACTGTGATATTTGTTCTATAATATTCACAACATATAAAACACTAAAGGAACATGCGAAGGCTAAACATGACAAGTCCGAAGTGTTCCGATGCAACTTGTGTGATAAATCATATAGTTCTAGACAAAATTTAAACATACATTACAACACTCATGGAAAAGCAAAATGTAAATTTTGCCAACAAGTATTGCCCGATGGAGAACTTATGGAACATTTACGAACTAACCATGAGCATTTAGTGTTCCCGTGTAAATTCTGTGATTTAATATGTTATTCACTAAATTCTTTACAGacacattttaatataaatcatttaaaaatcaatagCAAAGCTAAATCACAATGTGTTATGTGTGTCAGGAAATTTAAAGATGTAAAGAAACATAAATGTAAGTTTGCATGTTCAGAGTGCTTTGTGATGCCATGTCtccattataaatatttaatgtcaTATAGAGACCAAACATTAAATCATGCAAACAAAGTCAAGTGTGTAGACTGTGATTATGAAACAAGTTGGAAAAGACAGTTGATCGGTCATGTAAacagaaaacacttagaccatcATCCATTTACTTGTGCAGATTGTGCACAACAGTTTTATACAAAAAGGAGCTTAAAGAGACACATAGTACAGTGCCATCAAGATCTAAACTGTGAAACACCTATAGCCATGACAATGAAAATGCCACTGCCTATTATTGAACCTAAAAAAGGAAAAACCCTTTTTGTAGATGAAATACAAGAATCAACATTTCTAACTGAAATTGTACCAACAGCAACACCTGTAACGATGACAATGGAAATGCCACGGCCTATTATTGTACCTAAACACGAAAATAACCTTATTGTAGATGAAATACAAGAATCAACATTTCTAACTGAAATTGTATCAACAGCAACACCTATAACAATGACAATGGAAATGATGGAAATCCCACGGCCTATTATTGTACCTAAACACGAAAATAACCTTATTGTAGATGAAATACAAGAATCAACATTTCTAACTGAAATTGTACCAACAGCAACAACTGTAACGATGACAATGGAAATGCCACGGCCTATTATTGTACCTAAACACGAAAATAACCTTATTGTAGATGAAATACAAGAATCAATATTTCTAACTGAAATTGTATCAACAGCAACACCTATAACAATGACAATGGAAATGATGGAAATCCCACGGCCTATTATTGTACCTAAAGACGAAAATAACCTTATTGTAGATGAAATACAAGAATCAACATTTCTACCTGAAATTGTACCAACAGCAACACCTGTAACGATGACAATGGAAATGCCACGGCCTATTATTGTacctaaaaaagaaaataacctGATTGGAGGTAATGACCAATGTATTATGTGTCTAGGAAATTTTAAAGAAGttgaaaatgtaaataaacataaatgtaaGTTTGCATGTTCAGAGTGCTTTGTGATGCCATGTCTTCATTATAAATACTTAATGTCATACAGAGAGCAAACTTTAAATCATGCAAACAAAGTCAAGTGTGTAGACTGTCATTATGTAACGAGTTTGAAAGTACATTTGATCAGTCATGTAAACAGAGAACACTTAGACCATCATCCGTTTACTTGTGCAGATTGTGCACAACAGTTTTATACAAAATTGAGCTTAAAGAGTCATATAGCACTGTTCCATCTAGATCTAAACTGTAAATTTTGTGATTTTGTATTCAAAAATAGAAAGACTTTGGAAAGTCataaaaaagtttgtaaaacTGTAACTAGGGCATTTATTTGCAACCATTGTTCAGCGTCATTTGATATGGAGGAAGAACTTAGCACTCACGTGAACTTAAGACACAGCGAAAGTGTTTATGCATGTAATCTATGCAAGAGTAAGTTCTTGACTAATATAGAATTAGAGGAACATCACGCTAGAGTCCACGGAGGTATACAATATAAGCAACACAGGAAACACATTGAGTGTTCTGTATGTGacataatgtttaataatatcaaagaacTGCTTGAACACGAGAAGTCCCATGAACCCAATGAAATATACCCATGTAGAGTATgttcaaaacaatttaataGTTTAATTAAGCTCTATATACACAATAGGGCGCACCTAAAAATAAAGTGTAATGGTTGTAACATCAAAGTTGCAACGTCGTTTTTTCCAAGACATGAAGTTAGATGTCGGTACAAACGACAATCGCCTCTGTCTGACAAATTTTATCTTTGTGAAGTTTGTGGCAGttcatttcattttctatcGTCACTTCGGTCTCATCAGAGATTTCATTCGGACAAGGTACCATGCCCTGAATGTGATAAAAGGCTGAAACCGAACTTCCTTAAGCGACATATAGAGCAAGTACACAGATTGGCAAGAAAAAGAGAACGAAAGTTATGTCGAATAAAACAAGTTATGTCAATATTACCAACAGCAACACCTATAGCCATAACAATGGAAATGCCACGGCCTATTATGGATCCTGAACCTACAGATGAAAATAACCTTATAGAAAATGCAATACAAGAATCAACATTTTTAACTGAAATTGCACCAACAGCAACACCTATAGCCATGACAGTGGAAATGCCACGGCCTATTATTGAAACTAAAGCAGAAAATAACCTTATTGAAGATCAAGCACAAGAATTAACATTTTTAACTGAAATTGAACCAACAGCAACACCTATAGCCATGATAATGGAAATGCCACGGCCTATTATTGAAACTAAAGCAGAAAATAACCTTATTGAAGATCAAGCACTAGAATCAACATTTTTAACTGAAATTGAACTAACAGCAACACCTAGAGCCATGATAATGGAAATGCCACGGCCTATTATTGAAACTAAAGCAGAAAATAACCTTATTGAAGATCAAGTACAAGAATCAACATTTTTAACTGGAAGTGTACCAACAGCAACACCTATAGCCATGACAGTGGAAATGCCACGGCCTATTATGGAACCTGAACCTACAGAAGAAAATAACATTATTGAAGAAGAAGTACAAGAATCAACATTTTTAACTGAAATTGTACCGTCGGCAACACCTACAGTTAAGACAATGGAAATGCCACCCCTTATTTTTTATGCATGTAATCTATGCaagagtttttttattactattatagaCTTAAATGAGCATCACACGAAAGTTCATGGAGGAGATAAAGTACAGGAATCAACATTTTTAACTGAAATTGCACCAACGGCTAAACCTATTGTCATGGCAGTGGCAACGCCACGGCCTATTATTGAACCTACAGAAGTAAATAACCTTATTGAAGATAAAGCACAAGAATCAACATTTTTGACTGAAATTGTATCAACAGAAACACCTACAGTCAAGACAATGGAAATGCCAGGGCTTACTTTTTATGCATGTAATCTATGCAAGAGTATGTTTTTGACTAGTATAGAATTAGAGGAACATCACATCAAATTCCATAGAGTAGATAAAGTACTAGAATCAACATTTTTAACTGAAATTGCATCAACGGCAAAACCTATTGTCAAGGCAATGGAAATTCCACGGCCTATTATTGAACCTACAGAAGAAAATAACCTAAATGAAGTACAAGAATCAACATTTTTAACTGAAATTGCACCAACGGCAAAACCTATTGTCAAGGCAATGGAAATTCCACAGCCTATTATTGAACCTACAGACGAATCTGATGAAACTGTAGCACGTATGGAGCCAAGAAATAGAGTTATTGAACCCGAAGATAGTCTGCAGACTTCAAAAGATATTAAAATAGTTGAAAGCAAAATTGTATCAACACCCAACATTACCCTAAAGGAAGGACATATAGTTATAAAACCATTGAGTTTATCTAGGAATAACCACCGTGCTCCTCTCTATAACACATATGACTGTGCCAATTGTTCTGAAATATTTACATCATATAGAACACTAAAGGAACATGAGAAAGCTAAACATAAAAAGTCTGTGTTCCCATGCAACTGGTGTGataaaacttataataaaaGATATGATCTACACATACATTATAGGACTCATGGAAAAGCAAAATGTAAATTTTGCCAACAAGTACTGCCTGAAGGGGAACTTATGGAACATTTAAGAACTAACCATCCTAAATCAGGACACCCGTGTAAATTATGTGATTTAGTATATTATTCGCAAGATTCTTTATTGACACATTTAAAGTTAAGTCATTCAGTAAACATGACTAAAGGTAAATCACAATGTGTTATGTGTGTCAGGCCATTTAAAGATATAAAGAAACATAAATGTAAGTTTGCATGTTCAGAGTGCTTTGAGATGCCATGTCTacattataagtatttaatgtCATATAGAGACCAAATATTAAATCATGCAAACAAAGTGAAGTGTATAGACTGTCATTATGTAACGAGTACGAAAGTACATTTGATCAGTCATGTAAACAGATACCACTTAGATCATCATCCGTTTACTTGTGCAGATTGTGCACAACAGTTTCATACAAAAGTGAGCTTAAAGAGTCACATAGCACAGTTCCATCAAGGTCTAAACTGTGAATTTTGTGATTTTGTATTCAAAAATAGGAATACTTTGAAAAGGCataaaaaagtttgtaaaacTATTACCAGGGCATTTATTTGCCATCATTGTTCAGCATCATTTGATATGGAGGAAGAACTTAGCACTCATGTGAACTTAAGACACAACGAAAGTGTTTATGCATGTAATCTATGCAAGAGTAAGTTCTTGACTAATATAGAATTACAGGAACATCACATTAAAGTACATggaagtaaatataataaacgcTGGAAACACATTGAGTGTTCGTTATgtgacataatgtttcataataCCAAAGAATTGATTGAACATGAGAAGTCCCATAAGCCCGATGAAATATACCCATGTAGAGTATGTCCGAAACAATTTAATAGTTTAATGCAGCTCTACATCCACAATCAGAGGCACTATACTAAAAGGGTTAGGTGTAATCGTTGTAAGGGTAAAGTTTCTGCATCGTTCTTTCCGCAGCATGCATTTAGATGTCGGTACAAAAAACAATTAGCTGGGActgttaaattttatgtttgtgaAGTCTGCTGGAAATTATTTCGTTTTCAATCAGCGCTTCGATATCATCAGAAAATTCATTTGGAGAAGGAACAATGCCATATATGTGATAAAAGCTTCAAACCATCCATCCTAAACCAGCATATAGAGAAAGCACACGGAttgccaaataaagaaaaaaagttatgtaaaaTAGAAAAAGTTATGTCAATATTACCTTCAATTGTACCAACAGCAACACCTATAGCCACGGCAATGGAAATGCCACAGCCTATTATTGAACCAACAGAAGAAAACAACCTTATTGAAGATAAAGTAGAGTAA
Protein Sequence
MTEIIPTATAIAIKMPQPIIEPKEENNLIEDEVQESTFLDEELVKTVPHLKVKKLIVTKVETKNKVIKPKNSIKTPKGIKIVKSKTVSTPNITLKEGHIVIKPYLTPHYITYNCDICSIIFTTYKTLKEHAKAKHDKSEVFRCNLCDKSYSSRQNLNIHYNTHGKAKCKFCQQVLPDGELMEHLRTNHEHLVFPCKFCDLICYSLNSLQTHFNINHLKINSKAKSQCVMCVRKFKDVKKHKCKFACSECFVMPCLHYKYLMSYRDQTLNHANKVKCVDCDYETSWKRQLIGHVNRKHLDHHPFTCADCAQQFYTKRSLKRHIVQCHQDLNCETPIAMTMKMPLPIIEPKKGKTLFVDEIQESTFLTEIVPTATPVTMTMEMPRPIIVPKHENNLIVDEIQESTFLTEIVSTATPITMTMEMMEIPRPIIVPKHENNLIVDEIQESTFLTEIVPTATTVTMTMEMPRPIIVPKHENNLIVDEIQESIFLTEIVSTATPITMTMEMMEIPRPIIVPKDENNLIVDEIQESTFLPEIVPTATPVTMTMEMPRPIIVPKKENNLIGGNDQCIMCLGNFKEVENVNKHKCKFACSECFVMPCLHYKYLMSYREQTLNHANKVKCVDCHYVTSLKVHLISHVNREHLDHHPFTCADCAQQFYTKLSLKSHIALFHLDLNCKFCDFVFKNRKTLESHKKVCKTVTRAFICNHCSASFDMEEELSTHVNLRHSESVYACNLCKSKFLTNIELEEHHARVHGGIQYKQHRKHIECSVCDIMFNNIKELLEHEKSHEPNEIYPCRVCSKQFNSLIKLYIHNRAHLKIKCNGCNIKVATSFFPRHEVRCRYKRQSPLSDKFYLCEVCGSSFHFLSSLRSHQRFHSDKVPCPECDKRLKPNFLKRHIEQVHRLARKRERKLCRIKQVMSILPTATPIAITMEMPRPIMDPEPTDENNLIENAIQESTFLTEIAPTATPIAMTVEMPRPIIETKAENNLIEDQAQELTFLTEIEPTATPIAMIMEMPRPIIETKAENNLIEDQALESTFLTEIELTATPRAMIMEMPRPIIETKAENNLIEDQVQESTFLTGSVPTATPIAMTVEMPRPIMEPEPTEENNIIEEEVQESTFLTEIVPSATPTVKTMEMPPLIFYACNLCKSFFITIIDLNEHHTKVHGGDKVQESTFLTEIAPTAKPIVMAVATPRPIIEPTEVNNLIEDKAQESTFLTEIVSTETPTVKTMEMPGLTFYACNLCKSMFLTSIELEEHHIKFHRVDKVLESTFLTEIASTAKPIVKAMEIPRPIIEPTEENNLNEVQESTFLTEIAPTAKPIVKAMEIPQPIIEPTDESDETVARMEPRNRVIEPEDSLQTSKDIKIVESKIVSTPNITLKEGHIVIKPLSLSRNNHRAPLYNTYDCANCSEIFTSYRTLKEHEKAKHKKSVFPCNWCDKTYNKRYDLHIHYRTHGKAKCKFCQQVLPEGELMEHLRTNHPKSGHPCKLCDLVYYSQDSLLTHLKLSHSVNMTKGKSQCVMCVRPFKDIKKHKCKFACSECFEMPCLHYKYLMSYRDQILNHANKVKCIDCHYVTSTKVHLISHVNRYHLDHHPFTCADCAQQFHTKVSLKSHIAQFHQGLNCEFCDFVFKNRNTLKRHKKVCKTITRAFICHHCSASFDMEEELSTHVNLRHNESVYACNLCKSKFLTNIELQEHHIKVHGSKYNKRWKHIECSLCDIMFHNTKELIEHEKSHKPDEIYPCRVCPKQFNSLMQLYIHNQRHYTKRVRCNRCKGKVSASFFPQHAFRCRYKKQLAGTVKFYVCEVCWKLFRFQSALRYHQKIHLEKEQCHICDKSFKPSILNQHIEKAHGLPNKEKKLCKIEKVMSILPSIVPTATPIATAMEMPQPIIEPTEENNLIEDKVE*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01333172;
90% Identity
iTF_01333172;
80% Identity
-