Scos012331.2
Basic Information
- Insect
- Schrankia costaestrigalis
- Gene Symbol
- -
- Assembly
- GCA_905475405.1
- Location
- FR997832.1:15656980-15665839[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.0081 1 11.3 1.5 3 23 687 708 686 708 0.96 2 24 4.8 5.9e+02 2.5 1.1 4 23 1068 1089 1066 1089 0.84 3 24 0.39 49 6.0 0.3 1 22 1094 1115 1094 1115 0.95 4 24 5.6 7e+02 2.3 0.3 1 23 1157 1180 1157 1180 0.86 5 24 0.0024 0.3 12.9 2.1 3 22 1191 1210 1191 1210 0.96 6 24 0.56 69 5.5 0.0 3 23 1219 1240 1217 1240 0.89 7 24 0.0037 0.45 12.3 0.2 3 23 1260 1281 1258 1281 0.96 8 24 0.0021 0.26 13.1 1.7 1 23 1287 1310 1287 1310 0.95 9 24 0.14 18 7.3 0.0 1 23 1336 1359 1336 1359 0.90 10 24 0.022 2.7 9.9 3.4 1 23 1364 1386 1364 1386 0.97 11 24 0.05 6.2 8.8 0.1 1 23 1392 1415 1392 1415 0.95 12 24 0.0053 0.65 11.8 3.6 1 23 1428 1450 1428 1450 0.97 13 24 0.0002 0.025 16.3 1.8 1 23 1503 1526 1503 1526 0.97 14 24 0.0055 0.68 11.8 1.7 1 23 1588 1611 1588 1611 0.96 15 24 0.0027 0.34 12.7 2.1 2 23 1635 1657 1634 1657 0.95 16 24 0.1 13 7.8 0.1 2 23 1663 1685 1662 1685 0.93 17 24 0.011 1.4 10.8 0.2 1 21 1729 1749 1729 1750 0.95 18 24 0.00048 0.06 15.1 1.0 1 23 1760 1782 1760 1782 0.93 19 24 0.00013 0.016 16.9 0.3 2 23 1874 1896 1874 1896 0.93 20 24 4.5e-07 5.6e-05 24.6 1.4 3 23 1903 1923 1902 1923 0.98 21 24 0.013 1.5 10.7 1.4 1 23 1942 1964 1942 1965 0.95 22 24 0.22 27 6.8 0.0 1 23 1988 2010 1988 2010 0.97 23 24 0.032 3.9 9.4 0.6 1 23 2016 2039 2016 2039 0.95 24 24 0.00029 0.036 15.8 0.4 1 23 2047 2070 2047 2070 0.96
Sequence Information
- Coding Sequence
- atgaATGTGAACTATGATCGTGTTTGTAGACTGTGCTTGTCATCTCGAGGCGAATTACTGCCGATTTTTCCTACCACCAGTTCGGATGACTCGGAACCTCCCGTCCTCGCTTCAAAAATCAAGGATTGTGTGTCTATAGAGATAAACGAAAATGATGAACTGCCCACAAATGTCTGCAAGAAGTGTATGGATAATGTCAATAATTggcatatatttaaaaatgtctgTGAAAGGACACAAAACAAACTACAGTCTTTGACTAGTAAAGATGGCAGCCAACTAGAAGAGGTCCAAATAAAGAGTGAACCATTATCTGATGAAGCTTATGATGATGGAGTGGTTATTGACAGCTCATATCCTGATAGTGAGAACGCCAGTGTACCAACCAAAGTTCAGCCTGAAGGTCCTCCAATTTTGGCATCATTAGGGCTTACACCAAGGAGTGATAAGAATTGTGTGGACCCTCGAATGGATTGGCACCGAGTCCATGCAATTTTGGATATGGTTCAAGACAATGATGTAATTGATTCTCTGCAAACAAAAGAAGAGTGTGATGTTTTGCAGTATTCTGATCATGACTCTGACTCTGAGGCTGACCTTCAACCAGATATTGATGATGACTATGCAGATTGTAAAACTGGATACATTTgcagaaataaaagaattatatcCAAAAATCCTAAACTATCAACATCCATGCATAATATGAAAGTAAAAGAAGCTGTTGATCTCAGAAAACAAAACCGCCATTATCCTAATCATCACTTCCCTCAACCAATATATGCTTGGCAATTGTTATTTACTGATGATCTCTTAGAACTAATTGTTACTTCTACCAATGAAAATATTACAAAGAATGGAAAAGGAAATTCTACACCTACTaatgttaatgaaataaaatcttTCATAGGCATTTTATACATGCATGGCATAATGCGACCTACTCATCAGAAGTGCAGTGAGCTCTGGAGCAATAGCTACGGAATACCTTGTGTTAAACATGCCATGAAATATGAAAGATTCAAATTTCTTcttcaaaatataagttttgaCAAAGAAGACAATGACAGCATTATTCAATATGACATAATGAAACGTATGCGGAAGGTATTTGAAATTTTTGCTATGAATTGTAGAACAGTTCATGAGATTGAGAACACTGCTGTTATTGATGAGGTCATTGTTCCTGTCTATGGGCCTTGCCCATTTCGATATAATATTGATAAGAAACCACTGAAGTGTGGAATAAAAATGGTTTTACTAGTTGATTCGTCTACTTTCTATATGAGCAATTTAGATGTTATAACTGACCCTTACTTTGGTGCTTTCGAGATTGCGAAAAAGCTTGTACAGCATTTAGCCGGGTCtggtaaaattattgttatggaTAGCTGGTATCCATCTTcattgattgaacatttgaagAATGAATATCAGCTTTTTACTATAGTGGCTTTACATCCAAGTAATGAATGGATCCCTCCATTGTTCCTCTCGCGATATAGAAAGAGCAGATCATTTATGTCTGGTTTTATTGATAATGATGTCTCACTTACATCATATGTAAATTCACAATCTAAAGCGATAAATGTTTTAACTAATGAGCCAAGATATTATAGAAAAGGTCATGTGAATCAAACTACAGTTGTGTCTGTTTACAAGAAGAATCAGTCTGCTGTGGAAGTCATTGATGTTCTAATGAATTATTACACAACTACGCAGCATACTAATGATTGGACAATATCTTTGTTCtgtacattattaaatattgctaCAGTCAATGCTCAAGTATTGTGGACTTCACAGAGTAATAAAGTGGCACAGCGGCGATTGTTTATTAAAGATTTGGCATTAAGTTTGATTGTACCAGAGGTTAAGGGTGTGGAGAGCGAAAAAGAGGAGGAGGAGGAAGAAGAAGATGATGAGGATATGAATGAGGAACCTGTTACACCATTCCCGAAAATGCCGCATATGCCAGAGGTGTCCATTACCGTTATGCGTCCTACTGGTGAGACTCTTCATGCTCGTCAAGGTATTCATCAACTGGCATCCAAAGATTGTCTTGTCTGTGGTCGGTCATATAGATACTCTCACAATGCTCGTCGGCATGAACTTACCTCACACAGTTTTGATAGATACACCAACAAGATAACACAAAAGAAGTCTTTACCACACCTACAACCAAAACTGAGACCTAACCCATTCAATCCGAAAGCGCGAATGATGCCAAATCCtataaatcataaaaatatgCAATACATTTCCAAAAATATTCCAGCAAAAATTGTTCCTGTTAACAAAATTATCACTCCTCAAAGACCAATACCTATAAAGTCAGTAAAGTCTAGCCAAAATAACTTACCTTATCCTTTACGTATTAAAGCACTTAAAgatttgcaaataaagaaaaaggAGCCTCAAATTTTAAAGACATTACTGACATCTAAACCTGAAGTTTTAGTGTCCGAACCGGAAATAATAAATTCGGGACCGGAAAGTCCTGAGACACTAATATCTGAACCTGAGATAGCTTCTTTTCAAGTGGAAGCAATCCTTTCTGAACCCGATGCCGACGCTTATGACCCGAATCTGGGTGATGAGGAAATAGATGGAGAGATGCACAATGATCAAAGCCAAAATTATGACACTGTTGACATGAATTCtgaaaatgaaattgaaatagcGCGACAACAGAGTAACGATCAGGAGGATCAGGGCGAAGACAATATTGATGGTGACGAGAATCTGGATCAAGATGATGAAAACATGAATGGTAATCAAAGTGATAATGATCAGGATGGTGTGGATGATAATGGTGACAGTCAAGAAAATATTGAAATGGATGATGCCCTTGATATAAAGGCAGAGGTAGAAATGAAAGAGGGTGATGAATGCCTGGAAGATAGGGAAAATGATGAAAGCGAAATAAATCATGACGAAaatgaggatgatgatgatgaattaccAATTTCGTTACAGCCTGTTGTTGAAATTAATGAAGACTTACAACAAAACTCATTTAACAGCGAAGTTGCAGAAGAAGAAGACGAGCTACTTGATGAAACAGCTGATCCTAATGAGACTGTTGATGAAGAAGAAGCTAAAGAACTTGATCCTAATAAACTCTATGTCACTAAAACCCAAAGAgactttattttaaagtatcgtgacataattgaacaaattaatacaaaacgtTGTTTATGTTGCGACAAGGAATATCCACGAAGGAAAGCTGTAATCCAGCACTTGCAAAAAAATGGGCACAAAGTACCCAAACATACTTGTTACAACTGTGTAGTCACATTCGGACACATTGGGGCTCTTCTCAGCCATATGAGATCTAACACTTGCACGGATTTGTGGAAGATTATATTTGAAGAAAATGGTATTACTGACGATTGTGTTCTAGAAGATGAACCCAAAGAGGTGAAAGTCCAATATAAAGACATTTTCAATGCCAGATCCTATGCTTGCAAACTTTGCCCTGCCAAGTTCCAATTGAAACAGTTTATTATGAAACATGTACAAGACGCTCATGAGGATGGCCAGTCTAGGGTTCCGCTCGGCTGTGTACATTGTCGCGCAAGGTTCAAAGATAAAAGTTTACTGAAAAAGCATATACGTAAAGGAGATTGTACTGTTTATGTAGCTTGCGATTTATGTCCAGAACAATTCAGTAATATGCAAGCCTTTAATGATCATGCTTTAGCTATACATGCTGGGAATTTTGAGTCAGATAGTCAAAGCAAATGTGTGGACGGCCGCCCTACTGATTGCCCATTATGTGGTAAGAAAAATAGCAACTATCCTAATCTAGTAAAACATATGAAAGTTATACATAATGAGGAAAAACCACATTACTGTCAGCATTGCGATGCTAAATATGAGCAAGCTGCCGATCTTAACAAACACATTTACATGGAACATTCTGATAGAACATTAGGCATGCAAAGTCATGAGCCGGATATATCAATAGTGAAAGAAGAAGCGGAAGAATATCATTACTCGTGCACTGAGTGTAATGCTATATTTGAAACGGTCGATGCTTGGACAGATCACCAGGTCGCCGAACATAATCAAGTAGCACATCACTGTGATCAGTGTGAAAAGAAATTCTTGCGACCTTCAGAACTTGCTGAACATAAGAACACTCATCTGAGGGTTAAGTTCTATCCTTGCAGTATTTGTGCCAACTCGTACAGTACTCCTCAGAAATTGTCCGAGCATGTTCAGCAAGTACATCCCGGTGTCGGCACACATGCCGCAGCAGATTCTGAATTTTTCTGCCACATTTGTATCAGGTCATTCAAAAGTCGCCAAGCATATTCCAACCATATGCGTATACATGCCAAAGTGCCTACTACTAATAGAAAACCTGGCGAAATGATTTCGAGTAAAGGATTTTCACCTTCAATCATCGGGAAGCCTATTAAACAAGTATATCCAATGGTTCAACAGGGCTTTGTGTCGTTTAAACCTCATTATAATATTCCTAATGCTCCATATTCGTGTGATATCTGTGGAAAAGGTTTTATgcataagaaaaatatttggaAACACAAAAAGGTCTTGCATGCCGATATATTAAATGATAGAAATGATAGTGAGGAGAATACAATGCAAGCAGCTTCAACAGAAGAAGATGAATTCAACCCAGACGAAAATGGTGCAGTGCTCTCTACGCCtcaatttaatagttttaactTTACGAATTTCCCTAACAATATCCAACAACCACAACAACAAGACACAATGCCATATTCATGTGAATTATGTTTCAAACGATTCCCACTTCGAACCAGTTTATGGAAACATAAACGCGCTAAACACGGTATTATTAATCCCGGCGGTAACGATGGTCAGACGGCATCGGGAAGCGGTGAAGGTAGCAGCAGATCCAGTTGCACAATATGTCGTATTACATTCTCAGACAAAAAATCCTATTATCGCCATAGGAAGAACGTTCATAAATCAACAGTACAAATGTGCAAGATATGTGGCAAGCCACTCAATTCCACTCTGGAATTATATGACCATTTGAAGGCTGCACACGCTAAAGAACTATTAGGTTATAATGCTAATCAAGGAGCAAGTAAAGCCCAAGAAGTTGTGCCAGAAGTCGAACCTGAATATGATAATGATCAGGAGTCAGTAGATCCTAGCGTAGATTATCAGGCTCGATACCCCTGCGATACGTGTGGTAAACAATTTGTTGGTTTGTTAGCTTTACAAAATCATCAGTGCATAAATCAGGTACCACCACAGCCACAAACATTTGACTGTGAGATCTGCCACAAAAGTTATACGTCAATTTCGGCACTTAAGAGCCATCGCGGCTGGCATTTACGTTCACCAGACGGCAAAGCCGCTGCTAATAATAGTGGGCTGTGGATGCCGCAACATAAAGTAACTAGTAAAATCAGTAAACATGAAGTTATTGAAGCAATAGCTGCGCCTAGAGCTTCTCAGTCTGCCTCAGGTCCTGCTAGTGCAGTCACAGCTAAGAGAAGACTGCCACCGGAAGTTGAGGTAACTGTTGTCAATCCAAATAAGAAAATGCGTTCTGACGATTCTGTTGAATTGGATCAACAAAACTCCAGTTCAGCGGAAGATAGATATTGTACAATTTGTGATAAGGAATTTACTAAACGAGCCGCGTACCAACGGCACATGGACGAAGTTCATCAGCCAAACTCAGTTTTTTGCCCAGTTTGTGATAAGAGTTTTACTAGGAAGTCTACATTACTTATTCATATGAAAAAACATTATGAGAGTGGTGAGAGCAGTTCAGCTGCTGTTGGTCAAGTTGAAGATGAAATGCATACTTGCGACTTATGTGGAGCTCAATACGATGATGAAGAATCACTTAGATCTCATCAAGTAAGGCACCACGCCGAAGAATCAGAAGAAGACGAGGATCTCGACGACGGTAACGTGCCTATTGCTCCTCCAGGAGAGTTCACATGTGGACAATGTGGCGACGGAGTAGCTACACCTAGAGATCTTCTAGCTCACCGCACTATGCATGCAACTCCCACCAAATTCTTTTGTAATATATGCAAAGTTTACTTTGCTAGGGCACTGGACCTATCCTCTCACACTAGAGCTAGACACGCAGACAACGAAAAAGTATTCTTTCCTTGTGCCATGTGTGACAGATTTTACATGAACAAGAAGAGTTTACAACGGCACATTGAGATGGCCCACTGA
- Protein Sequence
- MNVNYDRVCRLCLSSRGELLPIFPTTSSDDSEPPVLASKIKDCVSIEINENDELPTNVCKKCMDNVNNWHIFKNVCERTQNKLQSLTSKDGSQLEEVQIKSEPLSDEAYDDGVVIDSSYPDSENASVPTKVQPEGPPILASLGLTPRSDKNCVDPRMDWHRVHAILDMVQDNDVIDSLQTKEECDVLQYSDHDSDSEADLQPDIDDDYADCKTGYICRNKRIISKNPKLSTSMHNMKVKEAVDLRKQNRHYPNHHFPQPIYAWQLLFTDDLLELIVTSTNENITKNGKGNSTPTNVNEIKSFIGILYMHGIMRPTHQKCSELWSNSYGIPCVKHAMKYERFKFLLQNISFDKEDNDSIIQYDIMKRMRKVFEIFAMNCRTVHEIENTAVIDEVIVPVYGPCPFRYNIDKKPLKCGIKMVLLVDSSTFYMSNLDVITDPYFGAFEIAKKLVQHLAGSGKIIVMDSWYPSSLIEHLKNEYQLFTIVALHPSNEWIPPLFLSRYRKSRSFMSGFIDNDVSLTSYVNSQSKAINVLTNEPRYYRKGHVNQTTVVSVYKKNQSAVEVIDVLMNYYTTTQHTNDWTISLFCTLLNIATVNAQVLWTSQSNKVAQRRLFIKDLALSLIVPEVKGVESEKEEEEEEEDDEDMNEEPVTPFPKMPHMPEVSITVMRPTGETLHARQGIHQLASKDCLVCGRSYRYSHNARRHELTSHSFDRYTNKITQKKSLPHLQPKLRPNPFNPKARMMPNPINHKNMQYISKNIPAKIVPVNKIITPQRPIPIKSVKSSQNNLPYPLRIKALKDLQIKKKEPQILKTLLTSKPEVLVSEPEIINSGPESPETLISEPEIASFQVEAILSEPDADAYDPNLGDEEIDGEMHNDQSQNYDTVDMNSENEIEIARQQSNDQEDQGEDNIDGDENLDQDDENMNGNQSDNDQDGVDDNGDSQENIEMDDALDIKAEVEMKEGDECLEDRENDESEINHDENEDDDDELPISLQPVVEINEDLQQNSFNSEVAEEEDELLDETADPNETVDEEEAKELDPNKLYVTKTQRDFILKYRDIIEQINTKRCLCCDKEYPRRKAVIQHLQKNGHKVPKHTCYNCVVTFGHIGALLSHMRSNTCTDLWKIIFEENGITDDCVLEDEPKEVKVQYKDIFNARSYACKLCPAKFQLKQFIMKHVQDAHEDGQSRVPLGCVHCRARFKDKSLLKKHIRKGDCTVYVACDLCPEQFSNMQAFNDHALAIHAGNFESDSQSKCVDGRPTDCPLCGKKNSNYPNLVKHMKVIHNEEKPHYCQHCDAKYEQAADLNKHIYMEHSDRTLGMQSHEPDISIVKEEAEEYHYSCTECNAIFETVDAWTDHQVAEHNQVAHHCDQCEKKFLRPSELAEHKNTHLRVKFYPCSICANSYSTPQKLSEHVQQVHPGVGTHAAADSEFFCHICIRSFKSRQAYSNHMRIHAKVPTTNRKPGEMISSKGFSPSIIGKPIKQVYPMVQQGFVSFKPHYNIPNAPYSCDICGKGFMHKKNIWKHKKVLHADILNDRNDSEENTMQAASTEEDEFNPDENGAVLSTPQFNSFNFTNFPNNIQQPQQQDTMPYSCELCFKRFPLRTSLWKHKRAKHGIINPGGNDGQTASGSGEGSSRSSCTICRITFSDKKSYYRHRKNVHKSTVQMCKICGKPLNSTLELYDHLKAAHAKELLGYNANQGASKAQEVVPEVEPEYDNDQESVDPSVDYQARYPCDTCGKQFVGLLALQNHQCINQVPPQPQTFDCEICHKSYTSISALKSHRGWHLRSPDGKAAANNSGLWMPQHKVTSKISKHEVIEAIAAPRASQSASGPASAVTAKRRLPPEVEVTVVNPNKKMRSDDSVELDQQNSSSAEDRYCTICDKEFTKRAAYQRHMDEVHQPNSVFCPVCDKSFTRKSTLLIHMKKHYESGESSSAAVGQVEDEMHTCDLCGAQYDDEESLRSHQVRHHAEESEEDEDLDDGNVPIAPPGEFTCGQCGDGVATPRDLLAHRTMHATPTKFFCNICKVYFARALDLSSHTRARHADNEKVFFPCAMCDRFYMNKKSLQRHIEMAH*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00017541;
- 90% Identity
- -
- 80% Identity
- -