Basic Information

Insect: Schrankia costaestrigalis
Gene Symbol: -
Assembly: GCA_905475405.1
Location: FR997831.1:6929230-6942980[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 8.6e-05 0.011 17.5 2.2 1 23 423 445 423 445 0.97

2 20 0.0045 0.56 12.1 0.6 1 20 451 470 451 473 0.94

3 20 1.2e-05 0.0015 20.2 5.8 1 23 492 514 492 514 0.98

4 20 0.0001 0.013 17.2 4.1 1 23 520 542 520 542 0.99

5 20 4e-05 0.0049 18.5 5.3 1 23 548 570 548 570 0.97

6 20 1e-05 0.0013 20.4 7.9 1 23 576 598 576 598 0.97

7 20 7.7e-07 9.5e-05 23.9 2.9 1 23 604 626 604 626 0.97

8 20 0.00025 0.031 16.0 5.7 1 23 632 654 632 654 0.97

9 20 0.00011 0.013 17.2 6.5 1 23 660 682 660 682 0.97

10 20 5.2e-07 6.5e-05 24.4 1.9 1 23 688 710 688 710 0.98

11 20 1e-05 0.0013 20.4 7.6 1 23 716 738 716 738 0.98

12 20 4.4e-05 0.0055 18.4 6.8 1 23 744 766 744 766 0.98

13 20 2.3e-05 0.0028 19.3 4.8 1 23 772 794 772 794 0.98

14 20 9.9e-06 0.0012 20.4 6.2 1 23 800 822 800 822 0.97

15 20 3.7e-06 0.00046 21.8 5.2 1 23 828 850 828 850 0.98

16 20 3.3e-06 0.00041 21.9 6.0 1 23 856 878 856 878 0.98

17 20 6.4e-05 0.0079 17.9 7.9 1 23 884 906 884 906 0.97

18 20 9.7e-06 0.0012 20.5 5.1 1 23 912 934 912 934 0.98

19 20 0.0014 0.17 13.7 0.6 1 23 941 963 941 963 0.95

20 20 0.17 21 7.1 7.1 1 23 973 995 973 995 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	8.6e-05	0.011	17.5	2.2	1	23	423	445	423	445	0.97
2	20	0.0045	0.56	12.1	0.6	1	20	451	470	451	473	0.94
3	20	1.2e-05	0.0015	20.2	5.8	1	23	492	514	492	514	0.98
4	20	0.0001	0.013	17.2	4.1	1	23	520	542	520	542	0.99
5	20	4e-05	0.0049	18.5	5.3	1	23	548	570	548	570	0.97
6	20	1e-05	0.0013	20.4	7.9	1	23	576	598	576	598	0.97
7	20	7.7e-07	9.5e-05	23.9	2.9	1	23	604	626	604	626	0.97
8	20	0.00025	0.031	16.0	5.7	1	23	632	654	632	654	0.97
9	20	0.00011	0.013	17.2	6.5	1	23	660	682	660	682	0.97
10	20	5.2e-07	6.5e-05	24.4	1.9	1	23	688	710	688	710	0.98
11	20	1e-05	0.0013	20.4	7.6	1	23	716	738	716	738	0.98
12	20	4.4e-05	0.0055	18.4	6.8	1	23	744	766	744	766	0.98
13	20	2.3e-05	0.0028	19.3	4.8	1	23	772	794	772	794	0.98
14	20	9.9e-06	0.0012	20.4	6.2	1	23	800	822	800	822	0.97
15	20	3.7e-06	0.00046	21.8	5.2	1	23	828	850	828	850	0.98
16	20	3.3e-06	0.00041	21.9	6.0	1	23	856	878	856	878	0.98
17	20	6.4e-05	0.0079	17.9	7.9	1	23	884	906	884	906	0.97
18	20	9.7e-06	0.0012	20.5	5.1	1	23	912	934	912	934	0.98
19	20	0.0014	0.17	13.7	0.6	1	23	941	963	941	963	0.95
20	20	0.17	21	7.1	7.1	1	23	973	995	973	995	0.98

Sequence Information

Coding Sequence: ATGAATCAGGAACATCATAACATGAACACGGGTGGTGGCCAGCCTCCTGGAAGTTCTGAGTCACAGAATCAAAGAGTTCAGGCCACTCAACAGCAGAATTTACCGGCAACAACGTCAGCTACTGATTTACGAGTGAACTCTGCTGCTGTGAACGTCGCTTTGTCCAGTGTGGCAAAATATTGGGTGTTTACAAATCTATTTCCTGGACCTATACCACAAGTATCTGTGTACGGATTACCTGCGGGTGCTAGACTAGAAAATGGGAAACCTGTACAGGATCTTGGTCAAGCTCATGCTAGTATATTAAATGGTGATCCCAACATCATACTTGGACATCATGCTGGCCAATCTCAAGTTACTGTATCTGCAGCCGGTGGCCAGCAGATACCGGTATCTCAAATTATTGCTACTCAGTCAGGACAGACACATGaAGCTCTTGTGGCACATACTCAACAAGCTGAGTTGGCTCAAAACTCCAACAATAACACACAAGTGTCTGTTGGAACTGGCCAGCAAACTCACCAGCAGGTACCCAATAACCGGGTGGAATTTGTTCAACACCATAACATTGATATGGTAAATTACGTGGGACACCATTCACAACAGCACATAATGCAGCAACAACTGATGGCGACTACGAGGCCTGAACACAGTAACCAACAGATACAGCTAACAGTTAGCGAAGACGGTATCGTGACGGTGGTGGAACCCGCGGGCGGTAAGATGGTCGACAAGGAAGAATTACATGAAGCCATCAAAATGCCCACTGACCATGCGCTTACCGTACACCAATTGCAACAAATTGTTGGACAGCAGGTTATAGACAGCGTAGTGCGAATAGAGCAAGCTACCGGCGAGCCAGCAAACATTCTCGTCACACACAACCCTGATGGTACAACGTCGATAGAAGCGAGCGCTGCTGACCCCCTAATAGTCAAGGATGAAAAGAACTCTCAGGCGAAGCTCGAAACGGCACAATTTGCAATACCAGCAGAAATAAAAGATATCAAAGGCATAGATTTAAAGaGTGTAGGAACAATGGGGATGGAAGGTGCAGTAGTCAAGATCTCAGCCGGTGCTTCAGAACATGATCTCCATGCTATGTACAAAGTTAATGTCGAAGATCTCTCACAGCTGCTAGCCTATCATGAAGTATTTGGAAAGTTAAATTCTGAGGGCCAACAGCAAGCTaagGTAATTAGTGAAGTTGAAGTAGAAGCTGGTACAAGTGCTGCAATGACAGAAGCAGAGACTTCACCTGGTCACCACTCCTGTGATATTTGCGGGAAAATATTCCAATTCCGTTATCAACTTATTGTTCATAGACGTTATCACGGCGAAACCAAACCGTTTACGTGTCAAGTTTGTGGATCTGCGTTTGCGAACCCTGTTGAATTATCAAGACATGGAAAATGTCATCTTGCTGGAGACCCTAATGAGAGACACGCCAAAAGAATGGCGCAAGACAAGCCATATGTATGCACAACTTGCCATAAAACATTTTCCCGTAAGGAGCACTTAGATAATCATGTGCGAAGTCATACTGGAGAGACACCATACAGATGCGAGTTCTGTGCGAAAACTTTTACACGAAAGGAGCACATGGTGAACCATGTTCGCAAGCACACAGGTGAAACTCCACATCGATGTGATATCTGCAAGAAGAGCTTCACGAGAAAGGAACATTTTATGAACCATGTCATGTGGCATACAGGTGAAACGCCGCACCATTGCCAAATATGCGGAAAGAAGTATACTAGGAAGGAGCATTTAATGAACCATATGCGATCACATACAAACGATACTCCATTCCGATGCGAACTGTGCGGCAAATCGTTCACAAGAAAGGAACACTTCACCAATCACATATTGTGGCATACGGGTGAAACACCCCATCGCTGTGACTTTTGTGCAAAAACGTTTACGCGTAAGGAGCACTTATTGAATCACGTTCGTCAACACACGGGCGAGTCACCACACAGGTGTAACTTCTGTAGCAAGTCCTTCACGAGACGAGAGCATCTTGTTAACCATGTTCGACAACATACCGGAGAGACGCCCTTCCAATGTGGATATTGTCCTAAAGCTTTCACAAGAAAGGACCACTTAGTAAACCATGTTCGCCAGCACACAGGTGAATCTCCTCACAAATGTTCGTACTGTACGAAGTCCTTCACTCGTAAGGAGCACCTCAACAACCACGTGAGACAACATACGGGCGAGTCACCTCACCGATGTACATTCTGTGCCAAGTCCTTCACTAGGAAAGAACATCTCACCAATCATATCAGACAGCACACGGGAGAAACGCCACACAAGTGCACGTTCTGCCCGCGCGCCTTCGCCAGGAAGGAACACCTCAACAACCACCTGCGCCAGCACACCGGCGTGTCGCCGCACTCCTGCTCCTACTGCAGCAAGACCTTCACGAGGAAGGAGCACCTCGTCAACCACATCAGACAACACACGGGCGAGACTCCTTTCAAATGCACATTCTGTTCAAAGTCGTTTTCTCGTAAAGAACATTTAACGAATCATATAAATCTTCATACGGGAGAAACGCCGCACAAATGCCCCTTCTGCACCAAGACATTCTCAAGAAAAGAACATTTAACTAATCATGTCAGaattCATACGGGTGAGTCGCCCCATCGATGTGATTTCTGTCAAAAAACATTTACTAGGAAGGAACATCTAACGAATCATTTAAAACAACATACCGGCGACACTTCACACGTTTGTAAAGTGTGTTCCAAAAACTTTACAAGGAAAGAACACCTGGTAATGCATATGAGGTCACACAGTTGCGGCGAACGACCACACGTTTGTGGTGAATGTGGCAAGTCATTCCCATTGAAAGGAAATTTATTGTTCCATGAACGATCACACAATAAAGCTAATGCCAATGCAAAACCACACAGATGTGAAGTTTGTTCAAAGGAGTTTATGTGTAAAGGACATTTAGTATCACATCGGCGCACTCACACAGAGGGGGGTGAAGCCGCTCCGAGCACAGAAACTCCAGCCGAGGGCGAAGATTGCGGAGATTGTAACAAGTGTGTTAAACCAGAACCTGAGAGAACTGAAAGAAAACATGAAATCAGAACATCTGTAGATGCCAGGCCAGCCGAAAGTAATGTGACTCAACCTCAGCACAATACTGCTCCAACTGTGATGCAAATTACCAATCAGGTGCGCAGCGCCACGTCGGACGGCAGCGGGCCCGCCACCTTCCCGCTGTCGCACCTGCCCGTCACCGTCAACTACTAG
Protein Sequence: MNQEHHNMNTGGGQPPGSSESQNQRVQATQQQNLPATTSATDLRVNSAAVNVALSSVAKYWVFTNLFPGPIPQVSVYGLPAGARLENGKPVQDLGQAHASILNGDPNIILGHHAGQSQVTVSAAGGQQIPVSQIIATQSGQTHEALVAHTQQAELAQNSNNNTQVSVGTGQQTHQQVPNNRVEFVQHHNIDMVNYVGHHSQQHIMQQQLMATTRPEHSNQQIQLTVSEDGIVTVVEPAGGKMVDKEELHEAIKMPTDHALTVHQLQQIVGQQVIDSVVRIEQATGEPANILVTHNPDGTTSIEASAADPLIVKDEKNSQAKLETAQFAIPAEIKDIKGIDLKSVGTMGMEGAVVKISAGASEHDLHAMYKVNVEDLSQLLAYHEVFGKLNSEGQQQAKVISEVEVEAGTSAAMTEAETSPGHHSCDICGKIFQFRYQLIVHRRYHGETKPFTCQVCGSAFANPVELSRHGKCHLAGDPNERHAKRMAQDKPYVCTTCHKTFSRKEHLDNHVRSHTGETPYRCEFCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCQICGKKYTRKEHLMNHMRSHTNDTPFRCELCGKSFTRKEHFTNHILWHTGETPHRCDFCAKTFTRKEHLLNHVRQHTGESPHRCNFCSKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCSYCTKSFTRKEHLNNHVRQHTGESPHRCTFCAKSFTRKEHLTNHIRQHTGETPHKCTFCPRAFARKEHLNNHLRQHTGVSPHSCSYCSKTFTRKEHLVNHIRQHTGETPFKCTFCSKSFSRKEHLTNHINLHTGETPHKCPFCTKTFSRKEHLTNHVRIHTGESPHRCDFCQKTFTRKEHLTNHLKQHTGDTSHVCKVCSKNFTRKEHLVMHMRSHSCGERPHVCGECGKSFPLKGNLLFHERSHNKANANAKPHRCEVCSKEFMCKGHLVSHRRTHTEGGEAAPSTETPAEGEDCGDCNKCVKPEPERTERKHEIRTSVDARPAESNVTQPQHNTAPTVMQITNQVRSATSDGSGPATFPLSHLPVTVNY*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01030446;
90% Identity: iTF_00869858; iTF_01152391; iTF_00795023; iTF_01492224;
80% Identity: -