Scos001975.1
Basic Information
- Insect
- Schrankia costaestrigalis
- Gene Symbol
- PAXBP1
- Assembly
- GCA_905475405.1
- Location
- FR997826.1:4192515-4196298[-]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.0049 74 4.1 0.0 171 205 175 209 167 214 0.81 2 2 1.2e-10 1.8e-06 29.1 0.7 3 60 200 258 198 316 0.76
Sequence Information
- Coding Sequence
- ATGTCCTGTAACTGCAGTCTGTCAGAGTTGAACTCGTCTCGCTCCGTGGTGTCGCGCTCAGCGAGCGCAGTGCACGCGCGACTGTCGAGCGCGGCGCACGTGCGGCAGTCACGCGCCGCGCGCTGCGCCGAACTCGACGCCGCGTACCGCCGCGCGCAGGCCATCAGGGGCTTCCTCACCGACCTCATCGAGTGCTTGGATGAGAAGATGCCAGAACTGGAGGCTTTAGAAGCTCGTGCCCTGGCGCTTCACAAGCGACGTTGTGAGTTCCTGGTCGAGCGACGGAGAGCGGACCTCAGGGACCAAGCGCAGGACGTGCTCGCGTTAGCCGGTCGCGCGGGGTGCGCGCGGCCGGTGGACAGCGAGGAGAAGACGCGTCGTGCGGCGGAGCGCGAGGGCCGGCGCCGCGCGCGCCGCCTGCGCCGCGaggccgccgccgccgccgccgggCACGCGCCTGCGCACCGCGACGGAGACTCCTCCGACGACGAGCTGCCGCCGCACGAGCTGCACCACCAGCGCCAGGAGACCGCCGCCATCCGCGCCGCGGCCGAGCTCGTGTTCAGTGACGCGCTGCCGGCGTGGCGCAGCGTGCGCGGCGTGTGCGCGCGCCTGGCGCGGTGGCGCGCGCGCTGTCGTGCGCTCTACAGCGACGCGTACGTGGCCGACTGTCTGCCCAAGCTGCTCGCGCCCTACGTCAGGCATCAGctTATATTATGGAATCCCCTAGCAGACGAAGACAATGAAGATTATGAAAAAATGGATTGGTACAAATGTTTGGTGATGTATGGTGTTCGCTCAGAGCGCGCGACAGACTCGTCCGAGTCAGGCTCAGAGAGCGACGCGGAGCCGGCGCGCGTGAGCGAGGCGGGCGTGCGGGACGACCCGGATCTGTTCCTGGTGCCCACCTTACTCACACGAGTTGTGCTGCCCAAGTTAActggtaaataa
- Protein Sequence
- MSCNCSLSELNSSRSVVSRSASAVHARLSSAAHVRQSRAARCAELDAAYRRAQAIRGFLTDLIECLDEKMPELEALEARALALHKRRCEFLVERRRADLRDQAQDVLALAGRAGCARPVDSEEKTRRAAEREGRRRARRLRREAAAAAAGHAPAHRDGDSSDDELPPHELHHQRQETAAIRAAAELVFSDALPAWRSVRGVCARLARWRARCRALYSDAYVADCLPKLLAPYVRHQLILWNPLADEDNEDYEKMDWYKCLVMYGVRSERATDSSESGSESDAEPARVSEAGVRDDPDLFLVPTLLTRVVLPKLTGK*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -