Basic Information

Insect: Schrankia costaestrigalis
Gene Symbol: -
Assembly: GCA_905475405.1
Location: FR997831.1:20254402-20256588[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 6.7e-07 0.00026 21.9 0.0 3 40 17 53 15 56 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	6.7e-07	0.00026	21.9	0.0	3	40	17	53	15	56	0.91

Sequence Information

Coding Sequence: ATGGCGCGTACAAAAACTGCAGTAAGAAAAAAGGGCAACCATTCATCTGAAAATATGCTAAAAGCTGTAAAGCTTAATAGGCAAGGCATGAGTTTGCGTAAAGCCGCGAAAGAATGTAATGTGTGTTACCCTACACTATTCCGGTATGTCAAAAAGCATAAAAATGTTGATGATGCGTTATTAGAGTGTCAAAAATTCACGCCTAACTACGACGTTAACAAAACGTTTACAGACGATCAAGAAACAGCACTCAAAACATATATTAAAGACTGTGCATTGAAGTTTTATGGATTAAGCAGTAAAGATGTTCGCCGCGTAGCTTACCAAATGGCAATCGTTAATGGTATCAAATATCCAGATAATTGGCAAAAGGAACAAATGGCTGGGAAGGAGTGGCTTCGATCTTTTAAGTCGAGACATCCAGATTTATCAATGAAGAAACCTGAGGCATGTAGTTTGGCTCGTGCCACTGCATTTAAtaaagaaactgtcaaaacttTCTTTACTAATCTAAAAACTGTTATGGATAGATATCCCTCTTTTGGCGATGGCACGAGAGTCTTTAATCTCGACGAAACTGCAACTACAACAGTCCAAAAGCCCCAGAAAGTGTTAGCGCCGAAAGGAAAACTAAACATAGGCAAAGTAACTAGCGGAGAAAGGGGTACTTTGGTTACTACATGCGCAATGGTATGTGCGGCAGGTCAAGCATTACCTCCGGTTCTAGTTTTTCCGAGGAAAAACTATAAAGACATAATGTTGCGTGGTGCTCCTCCAGGATCCCTCGGACTAGCTACTCCAACTGGGTGGATGAACGCAGAATTGTTTGTTCACGTTATGAGACATTTTATTAAACACACTTCTGCAAGCCCTGAAAACCCTGCCCTGCTAATTTGCGATAACCATGAATCTCACCTTAGCATTGAGGCTTTAAATTTAGCCAAAGAGTCTGGGGTGACAGTTTTAACTTTGCACCCTCATACAACTGCTAAGATGCAGCCACTTGATGTGGGTTTAAACGGCCCCTTCAAAGTATATTACAATAGCGCTGTGGATTCATGGTTAATGAAGAACCCAGGTAAACCAATAACTATTTACAATGTCGCTGAATGCGTGGGTCAGGCATATACAAAATCAATGACGCCAACAAATATAGCATCAGCCTTCAAAAAATGCGGGATTTTCCCGTACGATGCAGATATTTTTACCGAAATCGACTTCATGCCATCATCAGTTACTGACAGAGATGAACCAGCAAAACCATCCGTTGAACTGCAAAATAGAGAGAATCGTGCTAGTTTCTCATCAGATGCGACACGTGATAGTCCATCTGTTTTGGAAGCTATGGATCTCTATGTTGACACTGAACTTGCCTGTGAAATTCAGGATACTAGTTTAACAACCAAAGAAACGACGTCGCCTGCCAATGAAATTTTCGTTAGTGAGTCTCAAGAACCTGTTCCTAACATACCAAACAGAGAGATGACACCACCTACAATAAATACTCCCGCGAGTTCcataattcaatttaaaactcCTGACGAATTTATGCCTGCTTTGAAGGCTGTACCGCGGTCTGGAAAACGTAAAGCAAGAAAGCTTGGTAAAAGCATGGTTGCGACTGACACTCCAGAGAAAGACCAGATAgcagaagaaaagaaaaaaactcaAATAAGAAAATCAGCGGCAAAAGCAATAAAGCGACCAGTTTTATctgataaaaaaagaaaaactaaacctaaacaaattaaaatagattCTGAAACTAGTACCGATGAAGACGAGGAAATAGTGTGCTATAGTGAAACCGATCTGAGTGGAGTAGAAGATGAAGAAGAAGTTGATGAGGATGGGCTCCCATTGATTACAGAAAGTTTCATAAAACTTGAGCGTAAACCCAAAATAGACGATTATGTGCTAGTTTTAATGGACAATAAGAAACTGAAGGTATATTATGTCGCAAAGATAATTGATGTAGTAAGTGCTAATAGATATGAGGTTTCGTTTTTGAGACTAAAAGTGAAAGACATGATGAAATTTCAGATGCCATTAGAACCCGATATGTCAGAAATTCATATAAAAGAGATAAAAAAGATTCTTCCTCCACCACAAATAAATGGGACGAAAACCCGGAACGCCTTTTATAATTTTCCAGTCCGTGTGTCTCCAAATATTAAGTTGCGCTAA
Protein Sequence: MARTKTAVRKKGNHSSENMLKAVKLNRQGMSLRKAAKECNVCYPTLFRYVKKHKNVDDALLECQKFTPNYDVNKTFTDDQETALKTYIKDCALKFYGLSSKDVRRVAYQMAIVNGIKYPDNWQKEQMAGKEWLRSFKSRHPDLSMKKPEACSLARATAFNKETVKTFFTNLKTVMDRYPSFGDGTRVFNLDETATTTVQKPQKVLAPKGKLNIGKVTSGERGTLVTTCAMVCAAGQALPPVLVFPRKNYKDIMLRGAPPGSLGLATPTGWMNAELFVHVMRHFIKHTSASPENPALLICDNHESHLSIEALNLAKESGVTVLTLHPHTTAKMQPLDVGLNGPFKVYYNSAVDSWLMKNPGKPITIYNVAECVGQAYTKSMTPTNIASAFKKCGIFPYDADIFTEIDFMPSSVTDRDEPAKPSVELQNRENRASFSSDATRDSPSVLEAMDLYVDTELACEIQDTSLTTKETTSPANEIFVSESQEPVPNIPNREMTPPTINTPASSIIQFKTPDEFMPALKAVPRSGKRKARKLGKSMVATDTPEKDQIAEEKKKTQIRKSAAKAIKRPVLSDKKRKTKPKQIKIDSETSTDEDEEIVCYSETDLSGVEDEEEVDEDGLPLITESFIKLERKPKIDDYVLVLMDNKKLKVYYVAKIIDVVSANRYEVSFLRLKVKDMMKFQMPLEPDMSEIHIKEIKKILPPPQINGTKTRNAFYNFPVRVSPNIKLR*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01016616;
90% Identity: iTF_00636344;
80% Identity: iTF_01332558;