Scos039071.1
Basic Information
- Insect
- Schrankia costaestrigalis
- Gene Symbol
- -
- Assembly
- GCA_905475405.1
- Location
- FR997853.1:2720740-2721048[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.8e-09 1.8e-06 28.8 0.1 2 38 16 52 15 56 0.92
Sequence Information
- Coding Sequence
- atggTGCGCGCGTACAAACCCAAAACTgacagaaaaaatattaatgaagaAAACATTGAAGATGCAATACGTGAAGTATTGTCAAAGACTTTATCTATACGCAAAGCAGCCGACAAATATCGCATCAAAACTGCAACCCTACAACATCGCATAGAAAAAGCCAGAAAATCATTTGAAGCTACCAGAACATTATCTACAAATGAAGCATCCTCTTCATTACAAGCAGAATCTTCTTTATCACAAGCAGGTCCTCCATCTTCACCACAAATAGCACCACCTATGGAAATGGCACAAATAGCATCATCTTAA
- Protein Sequence
- MVRAYKPKTDRKNINEENIEDAIREVLSKTLSIRKAADKYRIKTATLQHRIEKARKSFEATRTLSTNEASSSLQAESSLSQAGPPSSPQIAPPMEMAQIASS*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01076366;
- 90% Identity
- iTF_01332513; iTF_01332514; iTF_01332516; iTF_01332508; iTF_01332509; iTF_01332510; iTF_01332511; iTF_01332512; iTF_01076378; iTF_01332515; iTF_01076366; iTF_01076379; iTF_01076380;
- 80% Identity
- -