Sgig062407.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Schoenobius gigantellus
Gene Symbol
-
Assembly
GCA_963935595.1
Location
OZ012558.1:17575700-17593846[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 9.2e-05 0.023 17.2 0.1 3 23 133 153 132 153 0.97
2 18 8.3e-07 0.00021 23.6 1.2 1 23 159 181 159 181 0.99
3 18 5.2e-06 0.0013 21.1 2.7 1 23 187 209 187 209 0.99
4 18 5.2e-06 0.0013 21.1 2.8 1 23 224 246 224 246 0.98
5 18 9.6e-05 0.025 17.1 1.0 1 23 261 283 261 283 0.98
6 18 3.3e-07 8.4e-05 24.9 1.5 1 23 298 320 298 320 0.99
7 18 0.00015 0.037 16.6 2.8 1 23 326 348 326 348 0.98
8 18 0.00019 0.047 16.2 0.1 1 23 355 377 355 377 0.97
9 18 1e-05 0.0026 20.2 2.1 1 23 383 405 383 405 0.99
10 18 0.033 8.5 9.2 1.8 1 23 412 434 412 434 0.98
11 18 5.6e-07 0.00014 24.2 2.3 1 23 440 462 440 462 0.99
12 18 0.039 9.9 9.0 1.8 1 23 469 491 469 491 0.98
13 18 2.3e-06 0.00058 22.3 1.5 1 23 497 519 497 519 0.99
14 18 0.00043 0.11 15.1 0.7 1 23 526 548 526 548 0.99
15 18 2.6e-06 0.00067 22.1 1.4 1 23 554 576 554 576 0.98
16 18 0.0018 0.47 13.1 0.3 1 20 582 601 582 604 0.93
17 18 7.2e-05 0.018 17.5 1.1 2 23 611 632 610 632 0.96
18 18 3.2e-06 0.00083 21.8 1.4 1 23 638 661 638 661 0.97

Sequence Information

Coding Sequence
ATGTTCGAGCAGCAGATCAAAGCAGAGCCCATGAGCTTCTACTCATCTCATCCCCACATTCACTCTGGCCCCCCAACAATAGTCCGGTCCGATTCAAACCACATCATCAACATGAACCAACACCATCAGCAGCACCAGGAAGACTCCAAAGACAGCCTGATAGTACAACAGCAAGTGCAACATCAACAAGAGCTTATGGAACAGCACCAGCAGCAACAGGAAATGCAACAAGATGACGAGCTAAGTTTTAAAGGAATGGACGACGACGGCGTAGAAATGGATATGGACAACCGACAGTGTTCTCAGGGTATGGGAGTGGACATGGGATCAATTCAAACCAAAATGGAAGTATCAAACGGTGGCGGCCAACCAACACCACGCTCTAAACCGCAAGCCTGCAAgGTCTGCGGCAAGGTTCTGTCATCTGCTTCGTCTTACTACGTTCATATGAAGTTGCATTCAGGAAATAAACCATTTCAATGTACTGTATGCGACGCAGCATTTTGCCGTAAGCCGTACCTGGAGGTGCACATGCGCACGCACACAGGCGAAAGGCCTTTCCAATGCGACCTCTGCCTCAAACGCTTCACTCAGAAATCAAGTCTGAACACGCACAAACGCGTCCACACGGATGAGCACATGCGCGCGTTGATGGTGAAGGACCGGCCCTTCAAGTGTGACCTGTGTCAGATGCGGTTCACGCAGAGTTCCAGCCTCAACCGACACAAGAAAATACACACGGAGGAACACAAGCGCGCACTGCAGGCTAAGGAACGACCGTTCCAATGCGGCGTCTGCTATGTAAGATTTACGCAGAAATCCAGTTTGGGTCGACACGGGAAAACACATACCGAGGAGCACATCCAATCGCTGATCAACAAAGTGCGCCCCTATCAATGCGACATCTGTGACAAGAGGTTCACTCAGAAGTCAAGCCTTGGCACTCATAAACGTATACACACTGGGGAGCGGCCGTTCCAGTGCACCGTCTGCCTCAAGTCCTTCACGCAGAAGTGCGCGCTCAATTTGCACGAAAAAATACATACGGTGCAGGGGCGGCCCCACCCGTGCGGGCTCTGCCCCGCGGCGTTCGCGCGCCGGCCCTACCTGGACTCTCACATGCGCACGCACACAGGCGAGCGGCCCTATCAGTGCGACGCGTGTCTCAAGCGCTTCACGCAGAAGTCCAGCCTCAATATACATAAGAGGACGCACACAGTCCAGGGCAGACCGTTCCAGTGCCTGTCGTGCCCCGCCGCCTTCACCTGCAAGCAATACCTGGAGATACACACGCGCACGCACACGGGCGAGCGCCCGTATCAGTGCGACATCTGCCTGAAGCGGTTCACTCAGAAATCCAGTCTGAACATCCACAAGCGGACGCACTCAGTGCAGGGCCGCCCGTTCCAGTGCCTGCAGTGCCCCGCCGCCTTCACCTGCAAGCAGTACCTCGAGATACACAACCGCACGCACACCGGCGAGCGGCCCTACCAGTGCGACGTGTGCCTCAAGAGGTTCGCGCAGAAGTCCACACTCAACATACACAAACGAACGCACACCGTACAAGGGCGGCCGTATCAGTGTATGGAGTGCCCCGCGGCGTTTACTTGCAAGCCGTACTTGGAGATTCACATGCGTACACACACGGGCGAGCGACCATTCGAGTGCGATATCTGTTTGAAGCGCTTTACGCAGAAATCGACACTCAACATTCACAAGAGAATCCACACCGGTGAACGACCTTATGCTTGTGATATTTGCCAAAAAAGGTTCGCCGTAAAAAGCTACGTAACAGCACATAGATGGTCCCACGTGGCCGACAAGCCGCTGAACTGCGACCGCTGCTCGATGACGTTCACCTCCAAGTCCCTGTTCGCGCTGCACATCCGCACGCACGCGGCCGGCCCGTGCTACGAGTGCAGCGTCTGCGGGCGAACGTTTGTCAGGGACAGCTACCTAATAAGACACCACAACCGCGTGCACCGTGAGAACCATAGCAACGTGTCGGCCAACAGCATCGGCACGATAAATAGCGTCGCCACCAACACCAACAATACGACCAATAACTACGACTCACCGGGCGTTTGCGACTTAAGTTTTGTTCCAATGGTGAATCGGTATATGACTTCACAAGGCACACAAGTATCAATGCAGGATACACAAAGCAAAATGTCAGCCATGTCTCCACAATCTATCGCATCCATATCATCGCCGCCACCCCCTCACACGCCTACGCCTCAACCAATGCCTGGTCAAATGCATCTCGGAGACTGA
Protein Sequence
MFEQQIKAEPMSFYSSHPHIHSGPPTIVRSDSNHIINMNQHHQQHQEDSKDSLIVQQQVQHQQELMEQHQQQQEMQQDDELSFKGMDDDGVEMDMDNRQCSQGMGVDMGSIQTKMEVSNGGGQPTPRSKPQACKVCGKVLSSASSYYVHMKLHSGNKPFQCTVCDAAFCRKPYLEVHMRTHTGERPFQCDLCLKRFTQKSSLNTHKRVHTDEHMRALMVKDRPFKCDLCQMRFTQSSSLNRHKKIHTEEHKRALQAKERPFQCGVCYVRFTQKSSLGRHGKTHTEEHIQSLINKVRPYQCDICDKRFTQKSSLGTHKRIHTGERPFQCTVCLKSFTQKCALNLHEKIHTVQGRPHPCGLCPAAFARRPYLDSHMRTHTGERPYQCDACLKRFTQKSSLNIHKRTHTVQGRPFQCLSCPAAFTCKQYLEIHTRTHTGERPYQCDICLKRFTQKSSLNIHKRTHSVQGRPFQCLQCPAAFTCKQYLEIHNRTHTGERPYQCDVCLKRFAQKSTLNIHKRTHTVQGRPYQCMECPAAFTCKPYLEIHMRTHTGERPFECDICLKRFTQKSTLNIHKRIHTGERPYACDICQKRFAVKSYVTAHRWSHVADKPLNCDRCSMTFTSKSLFALHIRTHAAGPCYECSVCGRTFVRDSYLIRHHNRVHRENHSNVSANSIGTINSVATNTNNTTNNYDSPGVCDLSFVPMVNRYMTSQGTQVSMQDTQSKMSAMSPQSIASISSPPPPHTPTPQPMPGQMHLGD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00686557;
90% Identity
iTF_01334143;
80% Identity
-