Sgig041708.1
Basic Information
- Insect
- Schoenobius gigantellus
- Gene Symbol
- egg
- Assembly
- GCA_963935595.1
- Location
- OZ012550.1:20509362-20533573[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.26 2.7e+03 0.2 0.1 20 38 126 161 122 163 0.70 2 2 2.4e-15 2.5e-11 45.2 0.0 4 75 193 258 190 260 0.91
Sequence Information
- Coding Sequence
- ATGTCTCGAGGGTTTGTCCAGCAATACCTAAAAGCGTACCCCGAGAGGCCTATGGTCAGATTGCACCCCGGACAGCATCTTAAGATCGAATCAAGTGGGAAATGGTGGGCCACAAGGGTGATAAAGGTGGACGCGTCGCTAGTACAAGTGCAGTTCGAGGAGGATAGTAAGACCGAGTGGATATATCGCGGCTCGACCAGGCTCGCGCCGCTGTACCTCGAGCTGCAGGCGGCCGAGAGGCGCCGGGCGAGGGCTATGCCGCGAACCAAGGCACAGCCTAGGCTGAACATGCCGTACGTGGAATACACACGCTCCGAAGAACAGAAGAAACAACCTGAACAACCACCGCCTTCGCCTGTAGAGCAAAAGGAAAGTCGTCAACGCGCCGTCGCCAAGAAATCCACGGCGTCCATGCCACCAGCCGTCCAGCAGCCGCCTCCCGTCGCTACGAATGTAACCAGCAGAGTTGTGTACTACACGCCGAAGAACGCAGTGAGACCCTATGAGTTCGTTCCACACACGTGCAACTCTACGTGTAAGAGGAAAGACGTGTTGGCATTGAGTGATCTAAGGACTTATAACCCTCTGGCGAAACCGCTGCTTAGCGGCTGGGAAAGGGAGGTGGCTCGTAGTAAAGGCGGCGGCAAGACAGTGCACTACCGCGCGCCGTGCGGCCGCCGCGTGCGCAGCATGCGCGACCTGCACCAGTACCTGCGCGCCACGCACTCCGACATGGCGGTGGACCTGTTCGACTTCAACAGCGACACCCACTGCCTCGCCGAGTTCGTGTTGCAGTCGTGCCGCGTCAGCAAGAAGGACCTCTCCCACGGCAAGGAGAACGTTCCGGTTCCGTGCGTGAACTACTACGACGACTCGTTACCGGAGTTCTGTTCGTACAACACGGAGaggacgcccactgctggggtGCCGCTCAACTTGGACCCAGAGTTCCTTTGCGGCTGCGACTGCACTGACGATTGCGAGGACAAGACTAAATGCGCCTGTTGGAAGATGACCTTAGAAGGGGCGAAAACCATCGGATTGGAAGGGCTGGAAGTCGGCTACGTATATAGGAGGTTGCCTGAACCACTGCCTTCTGGCATTTACGAGTGTAATTCAAGATGCAAATGTAAACAAACATGTTTGAATCGTGTCGCCCAGCATCCATTACAGCTTAAGCTTCAGGTATTCAAAACACTGAATCGCGGCTGGGGTATACGTGCGTTGAACGATGTGCCGAAAGGATCGTTTCTGTGCGTGTACGCCGGCAATTTGCTTACGGATGCCACTGCTAATATGgACGGCTTGAACGAGGGAGACGAGTATCTAGCGGAACTGGATTATATAGAAGTGGTGGAACAAATGAAGGAAGGCTTCGAAGAGGACATCCCCGAAGAGGACAAGATACTAGACAAGAATAATCAAGCGAAGGCTGGCGAGGGGGAGTCTGAATCAGAGGTGTCCAGTTCCGAAGAAGAGGAGACGGAACCCAAGAAGGAGGATGATGACGACTTCATACCGAAATTCATTGGGCTGGGGGTGTCCACCTTTAGTAAGCGGCTGCGCAAGCGCGACCATAAGAAAAAAGCGGGAGATAAGACTGACAATGAGAAGGATAAAGGGAATGAAAAAGAGAAGGACAGAGAAGCAGAGCAGAAGGGAGAAGATAATTGTATAACAATTAGCGACGATGAGGAAGtACGCGAGCCGTCCAGATTCACCGCCCAACCTGGTATGGCTTCGGGCGAGTTTAAATCTAAGTATAGGTCGGTTCGTTCGCACTTCGGAAAGGACGAGGCATGTTACATTATGGACGCCAAGGTTCAAGGGAACATTGGCCGATATCTCAATCACTCCTGCTGCCCAAACGTGTTCGTTCAAAACGTGTTCGTCGACACGCACGACCCCAGGTTCCCGTGGGTCGCGTTCTTCGCACTCAACTACATCAAAGCGGGCACAGAGCTCACGTGGAACTACAACTACGACGTGGGTTCGGTTCCCGGCAAGATACTCTATTGCTACTGCGGCACCGCCACTTGTAGGGGGCGGCTGCTGTGA
- Protein Sequence
- MSRGFVQQYLKAYPERPMVRLHPGQHLKIESSGKWWATRVIKVDASLVQVQFEEDSKTEWIYRGSTRLAPLYLELQAAERRRARAMPRTKAQPRLNMPYVEYTRSEEQKKQPEQPPPSPVEQKESRQRAVAKKSTASMPPAVQQPPPVATNVTSRVVYYTPKNAVRPYEFVPHTCNSTCKRKDVLALSDLRTYNPLAKPLLSGWEREVARSKGGGKTVHYRAPCGRRVRSMRDLHQYLRATHSDMAVDLFDFNSDTHCLAEFVLQSCRVSKKDLSHGKENVPVPCVNYYDDSLPEFCSYNTERTPTAGVPLNLDPEFLCGCDCTDDCEDKTKCACWKMTLEGAKTIGLEGLEVGYVYRRLPEPLPSGIYECNSRCKCKQTCLNRVAQHPLQLKLQVFKTLNRGWGIRALNDVPKGSFLCVYAGNLLTDATANMDGLNEGDEYLAELDYIEVVEQMKEGFEEDIPEEDKILDKNNQAKAGEGESESEVSSSEEEETEPKKEDDDDFIPKFIGLGVSTFSKRLRKRDHKKKAGDKTDNEKDKGNEKEKDREAEQKGEDNCITISDDEEVREPSRFTAQPGMASGEFKSKYRSVRSHFGKDEACYIMDAKVQGNIGRYLNHSCCPNVFVQNVFVDTHDPRFPWVAFFALNYIKAGTELTWNYNYDVGSVPGKILYCYCGTATCRGRLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -