Basic Information

Transcription Factor Domain

TF Family: GCFC
Domain: GCFC domain
PFAM: PF07842
TF Group: Unclassified Structure
Description: This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 4.1e-13 1.1e-08 37.2 0.1 174 230 34 90 4 94 0.82

2 3 0.1 2.8e+03 -0.2 0.0 214 230 116 132 112 135 0.84

3 3 0.1 2.8e+03 -0.2 0.0 214 230 158 174 154 177 0.84

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	4.1e-13	1.1e-08	37.2	0.1	174	230	34	90	4	94	0.82
2	3	0.1	2.8e+03	-0.2	0.0	214	230	116	132	112	135	0.84
3	3	0.1	2.8e+03	-0.2	0.0	214	230	158	174	154	177	0.84

Coding Sequence: atggAAATCGAGCACGCGCGACGCTCGACGAGCACTCAACGCCCGACGAACGATTCAAAAATGGAATTCCTCGCGTGGTGCGCAGGCGCAGCGCTGGCGGCGAGCACGTACCCGCTGATCCGCGCGCGGCTGGCGGCCGCGCTGGGCGCCTGGCACCCCGCCGACCGGTCCGCGCGCGCCCTGCTGGCCGCCTGGGCGCCCGCCTGGGGGCCCGCGCTGCACCCCGTCACCGCGCGCCACGTGCTGCCCAAGCTGGACCACTGCCTGCGGCACGCGCCGCtccccgcgccgcccgcgccgcccggTGAGTACCGCCCCCCGGCACCCCCCGGCACCCCCGCGCTGCACCCCGTCACCGCGCGCCACGTGCTGCCCAAGCTGGACCACTGCCTGCGGCACGCGCCGCtccccgcgccgcccgcgccgcccggTGAGTACCGCCCCCCGGCACCCCCCGGCACCCCCGCGCTGCACCCCGTCACCGCGCGCCACGTGCTGCCCAAGCTGGACCACTGCCTGCGGCACGCGCCGCtccccgcgccgcccgcgccgcccggTGAGTACCGCCCCCCGGCACCCCCGCGCTGCACCCCGTCACCGCGCGCCACGTGCTGCCCAAGCTGGACCACTGCCTGCGGCACGCGCCGCtccccgcgccgcccgcgccgcccggTGAGTACCGCCCCCCGGCACCCCCCGGCACCCCCGCCGCCTCCCGCGCTGCACCCCGTCACAGCCAAAGCCCAAGCTGgactgaattaa
Protein Sequence: MEIEHARRSTSTQRPTNDSKMEFLAWCAGAALAASTYPLIRARLAAALGAWHPADRSARALLAAWAPAWGPALHPVTARHVLPKLDHCLRHAPLPAPPAPPGEYRPPAPPGTPALHPVTARHVLPKLDHCLRHAPLPAPPAPPGEYRPPAPPGTPALHPVTARHVLPKLDHCLRHAPLPAPPAPPGEYRPPAPPRCTPSPRATCCPSWTTACGTRRSPRRPRRPVSTAPRHPPAPPPPPALHPVTAKAQAGLN

Sequence clustering based on sequence similarity using MMseqs2