Sgig033243.1
Basic Information
- Insect
- Schoenobius gigantellus
- Gene Symbol
- -
- Assembly
- GCA_963935595.1
- Location
- OZ012547.1:26477451-26481763[+]
Transcription Factor Domain
- TF Family
- PAX
- Domain
- PAX domain
- PFAM
- PF00292
- TF Group
- Helix-turn-helix
- Description
- The paired domain, a ~126 amino acid DNA-binding domain, is found in eukaryotic transcription regulatory proteins involved in embryogenesis. Initially identified in Drosophila’s paired (prd) protein, it typically resides in the N-terminal region and may be followed by an octapeptide, a homeodomain, or a Pro-Ser-Thr-rich C terminus. Paired domain proteins act as transcription repressors or activators, with DNA-binding specificity mediated by three subdomains. Crystal structures reveal a bipartite DNA-binding paired domain: an N-terminal subdomain (PAI) and a C-terminal subdomain (RED), linked by a flexible linker. Both subdomains contain a helix-turn-helix motif that binds DNA's major groove, while the linker may bind the minor groove. Variations in domain usage across Pax proteins and isoforms determine sequence specificity.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5e-08 3.9e-05 25.7 0.0 23 99 5 84 1 99 0.83
Sequence Information
- Coding Sequence
- ATGGATTTAAAACGAAATTCAGTGATTGCTCTTCATTTGGAGGGAAAATCGAATATGGAAATACGTCGAGCGCTGCCAAATCTTCAATTGAACGAAAAATTTGTGCATCGCACTATTCAACGTTATAATGAGACTGGTAGCGTTAAGAAACGCTACGGTGGCGGACGACGCTGTACTGCAACGGCGCCAGCAGTTGTCGAAAAGGTACGTCATCGATTAGACAGAAATCCAGCGCGCTCAGCAAACCAGCTCGCGAAGGATCTCAAGCGTAGCAAACAGTTGGATCGATCGAAAGAGCTGATTCGCTTGCTCGACTCTGGCGAGCTTCCCAATTTGGTCTTTACAGATGAGAAAACTTTTTGCGTTGAACagtttttaaacaaacaaaatgaccGTGTTTCGTTGAAGGGACGTGTCAGCGACCATTCAGATGAATTGCAAGTCACTCGACGCCAAGGAGCCGACCAAATCGTGGTCTGGGTGGCGGTGTCTGAAAAAGGCCGTTCTCCGCTCGTTTTTCTTCCAATGGGTCGCAGCCAAGTCAAAATAAACCAACAGATCTATCGAGACAAAGTCTTGCGACCAGGGCTGATACCGTGGGCACGCAACACATTCGGTTCAGAGCGTTGGACTTTCCAGCAAGACTCGGCACCATCGCACAGAGCAATTGCAACGCAAAATTGGTTGAAAGCAAACGTTCCAGTGTTGATCGACAGAGATATGTGGCCGTCGTCATCACCCGACTTAAATCCGCTGGACTTTTGTATTTGGGGTGTTTTACAGGCCAGGGTCTGTGCTAAAAAATACACTTCGGTGGAAGCGCTCAACGCTTACTCTTACGCGAGAATGGAATTGTTTGAGTGA
- Protein Sequence
- MDLKRNSVIALHLEGKSNMEIRRALPNLQLNEKFVHRTIQRYNETGSVKKRYGGGRRCTATAPAVVEKVRHRLDRNPARSANQLAKDLKRSKQLDRSKELIRLLDSGELPNLVFTDEKTFCVEQFLNKQNDRVSLKGRVSDHSDELQVTRRQGADQIVVWVAVSEKGRSPLVFLPMGRSQVKINQQIYRDKVLRPGLIPWARNTFGSERWTFQQDSAPSHRAIATQNWLKANVPVLIDRDMWPSSSPDLNPLDFCIWGVLQARVCAKKYTSVEALNAYSYARMELFE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01534803; iTF_01331498; iTF_01331497; iTF_01153952; iTF_01246896; iTF_01246938; iTF_01502945; iTF_01161345; iTF_01246887; iTF_01246952; iTF_01246954; iTF_01246956; iTF_01246897; iTF_01246936;
- 90% Identity
- iTF_01331498; iTF_01331497;
- 80% Identity
- -