Sgig047299.1
Basic Information
- Insect
- Schoenobius gigantellus
- Gene Symbol
- -
- Assembly
- GCA_963935595.1
- Location
- OZ012552.1:9701529-9701846[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2e-08 1.8e-05 26.5 0.0 9 43 18 53 10 55 0.75
Sequence Information
- Coding Sequence
- ATGCCAAAAACAGCTAAATTGAAATACACTAAAGAATACCTCGAAAAAGATATCGCTGAGGTTCAAAATAATACACAGCAGCTATCGGATCGACAAATAGCACAAAAATATGGTATACCGAGGTCCACACTTAGGTTTTACAAACGGAATCCGGGTCATAAGACTAGTCTGGGGCCGTCGCCTATTTTGACTCCTAATGTAGAAGCTCTTCTAGAAGATTGGATCTTAAATTCGGCTCATAAGGgctttccaaaaaataaggataatATTTTAGACAGTGTATGTACAAAAGTTTCTTGTGGACAATCCAAGACCTAA
- Protein Sequence
- MPKTAKLKYTKEYLEKDIAEVQNNTQQLSDRQIAQKYGIPRSTLRFYKRNPGHKTSLGPSPILTPNVEALLEDWILNSAHKGFPKNKDNILDSVCTKVSCGQSKT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01331382; iTF_01331381; iTF_01331385; iTF_01331388; iTF_01331389; iTF_01331390;
- 90% Identity
- iTF_01331385;
- 80% Identity
- -