Sgig052639.1
Basic Information
- Insect
- Schoenobius gigantellus
- Gene Symbol
- -
- Assembly
- GCA_963935595.1
- Location
- OZ012554.1:11997363-11997677[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.9e-11 1.7e-08 36.1 0.0 1 43 10 52 10 54 0.83
Sequence Information
- Coding Sequence
- ATGCCAAAAACAGCTAAATTGAAATACACTAAAGAAAACCTCAAAAAAGCTATCGCTGAGATTCAAAATAATACACAGCTATCGGATCGGCAAATAGCACAAAAATATGGTATACCGAGGTCCACACTTAGGTTTTACAAACGGAATCCGGGTCATAAGACTAGTCTGAGGCCGTCGCCTATTTTGACTCCTAATGTAGAAGCTCTTCTAGAAGATTGGATCTTAACTTCGGCTCGTAAGGgctttccaaaaaataaggataatATTTTAGACAGTGTATGTACAAAAATTTCTTGTGGACAATCCAAGACCTAA
- Protein Sequence
- MPKTAKLKYTKENLKKAIAEIQNNTQLSDRQIAQKYGIPRSTLRFYKRNPGHKTSLRPSPILTPNVEALLEDWILTSARKGFPKNKDNILDSVCTKISCGQSKT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01331418;
- 90% Identity
- iTF_01331381; iTF_01331418; iTF_01331388; iTF_01331382; iTF_01331389; iTF_01331390;
- 80% Identity
- -