Schi004848.1
Basic Information
- Insect
- Schlechtendalia chinensis
- Gene Symbol
- -
- Assembly
- GCA_019022885.1
- Location
- CM032348.1:1333573-1335011[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.31 3.7e+03 -1.4 0.0 22 44 83 105 75 110 0.71 2 9 0.017 2e+02 2.6 0.0 21 45 110 134 92 143 0.79 3 9 0.034 4.1e+02 1.6 0.0 22 45 167 190 156 195 0.83 4 9 0.049 5.9e+02 1.1 0.1 26 45 227 246 214 250 0.80 5 9 0.001 12 6.5 0.3 12 45 242 274 232 277 0.79 6 9 0.0025 30 5.3 0.1 21 45 278 302 274 305 0.86 7 9 0.0023 28 5.4 0.1 21 45 306 330 302 333 0.87 8 9 0.0014 17 6.0 0.1 21 45 334 358 330 361 0.87 9 9 0.0024 29 5.3 0.1 21 45 362 386 358 389 0.86
Sequence Information
- Coding Sequence
- ATGGATATCACCGCGTTGTTTGATTCGATTCGGTCCACGACGGCGAACCGGACATCTCACGAAATATCGTCTAACGCTTCGTGCGACCCGAAACATTCGTTCGTTGTCTGGAAACGGTCTGAAAACGACGACGCGATGTCGCTGAAACAGCGTGAAAGACACGGACGCCGGACGGCACACGCCGGAGACGGAGAGACGTTCGCCAGCAAAACCCATCTGACGACGCACCTGAGGACGCACTCGGACGACAGACCTTTCGGGTGCGACGTGTGCGCGAAGACGTTCGCTAGCAAAACCCATCTGACGACGCACCTGAGGACGCACTCGGGCGAGAGACCGTTCGGGTGCGACGTATGCGCGAAGACGTTCGCTAGCAAAACTCTACTGACGAGGCACCTGAGGACGCACTCGGACGACAGACCGTTTGGGTGCGACGTGTGGGCCAAGACGTTCGCCAGTAAAACCAATCTGACATGCCATCTGAGGACGCACTCGGACGACAGACCGTTTGGATGCGACGTGTGCGCCAAGACGTTCGCCAGCAAAACCAATCTGACGAGCCATCTGAGGACGCACTCGGACGACAGACTTTTCGGATGCGACGTGTGCGCCAAGACGTTCGCCAGAAAAACCCATCTGACGAGCCATCTGAGGACGCACTCGGACGACAGACTTTTCGGGTGCGACGTGTGCGCGAAGACGTTCGCCAGCAGACCCAATCTGACTAGGCACCTGAGGACGCACTCGGGCGAGAGACCGTTCGGGTGCGACGTGTGCACGAAGACGTTCGCCAGCAGACCCAATCTGACTAGGCACCTGAGGACGCACTCGGGCGAGAGACCGTTCGGGTGCGACGTGTGCGCGAAGACGTTCGCCAGCAGACCAAACCTGACTAGGCACCTGAGGACGCACTCGGGCGAGAGACCGTTCGGGTGCGACATGTGCGCGAAGACGTTCGCCAGCAGAACCAATCTGACGAGGCACCTGAGGACGCACTCGGGCGAGAGACCGTTCGGGTGCGACGTGTGCGCGAAGACGTTCGCCAGCAGAACCAATCTGACTAGGCACCTGAGGACGCACTCGGGCGAGAGACCGTTCGGGTGCGACGTGTGCGCGAAGACGTTCGCCAGCAGACCCAATCTGACTAGGCACTTGAGGACGCACTCGGACAGCGATCGGATGACGTCGTATACGAACGTTCGGGTGCGACGATCGCGCGACAACGGACGCGGAAACGTCTAA
- Protein Sequence
- MDITALFDSIRSTTANRTSHEISSNASCDPKHSFVVWKRSENDDAMSLKQRERHGRRTAHAGDGETFASKTHLTTHLRTHSDDRPFGCDVCAKTFASKTHLTTHLRTHSGERPFGCDVCAKTFASKTLLTRHLRTHSDDRPFGCDVWAKTFASKTNLTCHLRTHSDDRPFGCDVCAKTFASKTNLTSHLRTHSDDRLFGCDVCAKTFARKTHLTSHLRTHSDDRLFGCDVCAKTFASRPNLTRHLRTHSGERPFGCDVCTKTFASRPNLTRHLRTHSGERPFGCDVCAKTFASRPNLTRHLRTHSGERPFGCDMCAKTFASRTNLTRHLRTHSGERPFGCDVCAKTFASRTNLTRHLRTHSGERPFGCDVCAKTFASRPNLTRHLRTHSDSDRMTSYTNVRVRRSRDNGRGNV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01330769;
- 90% Identity
- iTF_01330769;
- 80% Identity
- iTF_01330769;