Basic Information

Insect: Schlechtendalia chinensis
Gene Symbol: -
Assembly: GCA_019022885.1
Location: CM032342.1:3022910-3025649[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 7.9e-06 0.00057 20.6 1.1 1 23 189 211 189 211 0.99

2 9 0.0084 0.6 11.1 4.9 1 23 222 244 222 244 0.95

3 9 2.4e-05 0.0017 19.1 0.8 2 23 337 359 337 359 0.96

4 9 0.00095 0.068 14.1 4.3 2 23 471 492 470 492 0.97

5 9 6.5e-05 0.0047 17.7 2.5 1 23 498 520 498 520 0.96

6 9 3.5e-06 0.00026 21.7 0.1 1 23 526 549 526 549 0.96

7 9 5.7e-07 4.1e-05 24.2 0.8 1 23 555 577 555 577 0.99

8 9 5.6e-06 0.00041 21.1 2.2 1 23 583 605 583 605 0.98

9 9 4.2e-06 0.0003 21.5 0.6 1 23 611 633 611 633 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	7.9e-06	0.00057	20.6	1.1	1	23	189	211	189	211	0.99
2	9	0.0084	0.6	11.1	4.9	1	23	222	244	222	244	0.95
3	9	2.4e-05	0.0017	19.1	0.8	2	23	337	359	337	359	0.96
4	9	0.00095	0.068	14.1	4.3	2	23	471	492	470	492	0.97
5	9	6.5e-05	0.0047	17.7	2.5	1	23	498	520	498	520	0.96
6	9	3.5e-06	0.00026	21.7	0.1	1	23	526	549	526	549	0.96
7	9	5.7e-07	4.1e-05	24.2	0.8	1	23	555	577	555	577	0.99
8	9	5.6e-06	0.00041	21.1	2.2	1	23	583	605	583	605	0.98
9	9	4.2e-06	0.0003	21.5	0.6	1	23	611	633	611	633	0.97

Sequence Information

Coding Sequence: ATGGATAATGATATATTGGATGAACGTTCAAGAGAATTTTTAGAAACTGCAGATCAATATATTACTGAACATGGTCACCAACATGTATCCGAAGAAGATGGTAAACAACTTGTTAGTGATGAACACAATTTACCTCAAGAATTTCGTATTGATGAAAATGGAGAATTATCCCATCATACTACTGGATATTATGATACGAGCGATATGTTATCTGGTGAGGGGTCAGCAACTCTTACTGAAGATGACCATAGATTAGCTAATGAATTGGCTGCTGAGCTTGCCCAACAGAACAAATCTCTAGTTGATGGTAGCCATCATGATACTCATCTCATGACCAGCTATTTGTACAGTACTGACTTTGATTTAAGCACAAATAGTAAACATTCATCGCAAACCTCAAATCATATTAATAATCAACAGATTATTAGTTCAGAAAATTTAATCGAAGTTGAAGCTTCAGAATCAGATTATCATGCAGAAATACAAAATAATTTGCCACATAAAAAACGTTTTCGTAAACGAGAATCAACACCAGCTCCTTTGAGAAGTATTCATCCAAAGTGTTACAAATGTAAACAGTGTGGTGAACAGTTCAATTCACAATCAGGATTTACTGTACATAGAGCAACACATACTCCTAAAAAGTTTGGTGGACGAACGCCATTTTTATGTGAAATTTGTGATAAACATTTTACACATCAAATAAGGTTTTTTGAACACCTAAAATTGCACTATGAACCGCAACAAAGTAAAGTAATTGTAGTTACTACAGACTCTGGTACTTCTCCACATCACATCAATTATCAAAACCATGGTGGACAAGAACCAACAAATAATAATGGAAATCAATATATTGAAGATACCATTGAAGCTAATCAACCAGAACTTGTTGATCTTCCGCCACTTCAAACATATAGATTAACTGAAGAAAGCTTGGATGATGATAAACATTGTATATTTTCATCTGATGGATCAATATTGGCTGCACAACTTCAGCAACCATTTCCTACATGTCATCTTTGTGGTAGAAATTTTCGCCGTCTAAAAGCTTTGGAAATTCATATGGCTTCTGTACACCCACAGCCAGCAACTGTTGTTACTGTCAAACAAGACTGTTTGGAAGAGTTTTCTGATCCAGAAGATTTAATGGAAGGCATTCGTCATATGGTGCCTGGTGTTGCTGATACTGAATCTGAAAATGATGAAAAACAGCCTATTCAAGATTGGGATTACAATGGTGAAAGTAATACAAATCATGAAGATGTTTTGATTAAACCAAAACAAGAAGAAAATACTTGTTTACTTAATGAAAATGATGATAATGGTGAAAATAGTCGAGCTGAACATACTTGGGAAGACGATACAGATGAATTAGAACAAATTATGAAAAAAAATATTTCAAAGAATCTCGTATGCACCCAATGCAAAAGAAAATTCAATCATCGTAATTCTCTGCTATATCATTTAAGATCACATTCAGGCAAACGACCACATAGCTGTAAACTGTGTCCTAAAAGTTTCTTTTCAAGCAGTGCTCTTAAGGTACATAATCGTTTACATACAGGTGATAAACCATTTGAATGTGAATGGTGTGGAAGAAATTTTCGTCAGTGGGGTGATCTTAAGTATCATATTGCTTCGTTACACTCTGAATCTAAACAATTCCAATGTGAATTTTGTGGTAAAGATTTTGCTCGTAAATACTCATTGATTGTCCATCGACGAATACATACTGGAGAAAAGAACTATGTTTGTGAATTTTGTAAAAAAACATTTCGAGCATCTTCTTACCTACAAAATCATCGTCGTATTCATACAGGTGAAAAACCATATAAATGTGAAACTTGTGGTAAAGCATTCAGAGTACGTTCAGATATGCGTCGACACACTGTTGTACATAGAAAAGATACTGCGAACACAGTTCAAATTAATAGTTATGCAGGTCAAGTGAGTGGTATTGTCACTTCAGACATGAGTATCCATCTAACCAAACTAGAAGTGGATAAAGATAAAATAAATGTTGAATCTAATGTGGATGTGAAATTTCATGAAAATTTCTCTCATAATCCCAATCAATTGTTATCTGCTAATGAAGTTAGTGCACCACTCAATCTTAATTTACGAACTCAAGATGATGGTGACAATGATGAATCTACTAATTTTGAACAATTTAATGGCCGTCAAGAAATAATTGATCGGGAAACCAATACTTTATATGTTTGGATTCCATCCAATACGGAGCAACTATTACAAAGTGAATGA
Protein Sequence: MDNDILDERSREFLETADQYITEHGHQHVSEEDGKQLVSDEHNLPQEFRIDENGELSHHTTGYYDTSDMLSGEGSATLTEDDHRLANELAAELAQQNKSLVDGSHHDTHLMTSYLYSTDFDLSTNSKHSSQTSNHINNQQIISSENLIEVEASESDYHAEIQNNLPHKKRFRKRESTPAPLRSIHPKCYKCKQCGEQFNSQSGFTVHRATHTPKKFGGRTPFLCEICDKHFTHQIRFFEHLKLHYEPQQSKVIVVTTDSGTSPHHINYQNHGGQEPTNNNGNQYIEDTIEANQPELVDLPPLQTYRLTEESLDDDKHCIFSSDGSILAAQLQQPFPTCHLCGRNFRRLKALEIHMASVHPQPATVVTVKQDCLEEFSDPEDLMEGIRHMVPGVADTESENDEKQPIQDWDYNGESNTNHEDVLIKPKQEENTCLLNENDDNGENSRAEHTWEDDTDELEQIMKKNISKNLVCTQCKRKFNHRNSLLYHLRSHSGKRPHSCKLCPKSFFSSSALKVHNRLHTGDKPFECEWCGRNFRQWGDLKYHIASLHSESKQFQCEFCGKDFARKYSLIVHRRIHTGEKNYVCEFCKKTFRASSYLQNHRRIHTGEKPYKCETCGKAFRVRSDMRRHTVVHRKDTANTVQINSYAGQVSGIVTSDMSIHLTKLEVDKDKINVESNVDVKFHENFSHNPNQLLSANEVSAPLNLNLRTQDDGDNDESTNFEQFNGRQEIIDRETNTLYVWIPSNTEQLLQSE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00019610;
90% Identity: iTF_00670427;
80% Identity: -