Elan018685.1
Basic Information
- Insect
- Eriosoma lanigerum
- Gene Symbol
- -
- Assembly
- GCA_013282895.1
- Location
- scaffold:21949609-21952359[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 5.8e-06 0.00077 20.4 0.7 1 23 189 211 189 211 0.98 2 9 0.0015 0.2 12.8 5.0 1 23 222 244 222 244 0.95 3 9 1.5e-05 0.002 19.1 0.8 2 23 335 357 335 357 0.96 4 9 0.00059 0.079 14.1 4.3 2 23 468 489 467 489 0.97 5 9 4.1e-05 0.0054 17.7 2.5 1 23 495 517 495 517 0.96 6 9 2.2e-06 0.00029 21.7 0.1 1 23 523 546 523 546 0.96 7 9 3.6e-07 4.7e-05 24.2 0.8 1 23 552 574 552 574 0.99 8 9 3.5e-06 0.00047 21.1 2.2 1 23 580 602 580 602 0.98 9 9 2.7e-06 0.00036 21.4 0.6 1 23 608 630 608 630 0.97
Sequence Information
- Coding Sequence
- ATGGACACTGGTATATTAGATGAACGATCTAGAGAATTTTTAGAAACTGCAGATCAATATATTACAGAACATGGACATCAACATGTGTCTGAAGAAGATAGCAAACAACTTGTTAGTAACCAACATAATTTGACTGATGAATTTCGTATTGATGAAAATGGAGAATTGTCCCATCATACTTCCGGCTATTATGATACAAGTGATATGTTATCGGGTGATGGATCTACGACACTTACTGAAGATGACCACCGATTAGCAAATGAATTAGCTGCTGAACTTGCTCAACAGAACAAATCTCTTGTTGATGGTAGCCACCATGATACTCATCTCATGACTAGTTATTTGTACAGTACTGACTTTGATTTAAATACAAATAGTAAACATTCATCACAAAATCAAAGTCATATAAATAATCAACAGATTATTACCTCAGAAAGTTTGATAGAAGTTGAAGCTTCAGAATCTGACTATCATGCAGAAATACAAAATAATTTACCACACAAAAAACGTTTCCGTAAACGGGAAACTGCCCCCACTCCATTGAGAAGTATTCATCCAAAATGCTACAAATGCAAACAATGTGGAGAACAGTTCAATTCACAATCTGCATTTACCGTACATAGAGCAATACATACTCCCAAAAAGGTTAATGGTAGAATGCCATTTTTATGTGAAATTTGTGATAAGCATTTTACACATCAAATAAAGTTTTTCGAACACCTTAAATTACATTATGAACCACAGCAAAGTAAAGTAATTGTAGTTACCACAGACTCTGGTACTTCTCCACATCATGTAAATTATCAAAATCATGGTACACAGGAATCGACAAATAATGAAAATCAATATATTGAAGAAAATATTGAAGACCCACCACAGCTTCATGATCTTCCACCACTTCAAAGTTATAGATTAACTGAAGAAAGCATTGAGGATGACAAACATTGTATATTTTCATCTGATGGATCTATATTGGCTGCACAACTTCAGCAACCATTTCCAACATGTCATCTCTGTGGTAGAAATTTCCGCCGTCTTAAAGCTTTGGAAATTCATATGGCTTCGGTACACCCACAACCAGCAACAGTAGTTACTGTTAAACAAGACTGTTTAGAAGAATTTTCTGATCCAGAAGATTTAATGGAAGGCATTCGCCATATGGTACCCGGAGTTGCTGATACGGAATCAGAAACCGATGAAAAGCAACCAATACAAGATTGGGAATACAATGGTGAAAACAATGCAAATCATGAAGATACTATAATAAAACCAAAACAAGAAGAAAATAATTGTCTATTGAATGAAAATGATAATGGTGAAAATAGTCGAGCTGAACATACTTGGGAAGATGATACTGATGAATTGGAACAAATAATGAAAAAAAATATATCAAAAAATCTTGTATGCACTCAATGTAAAAGAAAGTTCAATCATCGTAATTCTCTACTATATCATTTAAGATCACATTCGGGTAAACGACCACATAGCTGTAAACTGTGTCCTAAGAGTTTCTTCTCAAGCAGTGCTCTTAAGGTACATAATCGTCTACATACTGGTGATAAACCATTTGAATGTGAATGGTGTGGACGCAATTTTCGACAATGGGGTGACCTTAAATATCATATTGCTTCATTACACTCTGAATCTAAACAATTTCAATGCGAGTTTTGTGGTAAAGATTTTGCTCGTAAATATTCACTGATTGTTCATCGGCGAATACACACAGGAGAAAAGAACTATGTATGCGAGTTTTGTAAAAAAACATTTCGAGCTTCTTCTTACTTACAAAATCATCGTCGTATTCATACAGGTGAAAAACCATATAAGTGTGATACTTGTGGTAAAGCATTTAGAGTACGTTCAGACATGCGTCGGCATACTGTTGTACATAGAAAAGATACTGTTAACTCTATTCAGATTAATAGTTATGCAGGTCATGTGAGTGGTATTGTTGCTTCTTCAGATATGAGTATCCATCTAACCAAATTAGAAGTGAAAGATAAAGTAATTGCTGAATCTACTGAAGATATTAAATTTCATGAAAATTTTTCGCATAATTCCAATCAACTATTAACAGCTGATGAAGTTAGTGCACCTCTAAATCTTAATTTACGAGCTCAAGATGATGGTAACAACGATGAGTCTACCAATTTTGAACAATTTAACGGCCGACAAGAAATAATTGATAGAGAGACAAATACTTTGTATGTTTGGATTCCATCCAACACTGAGCAACTTTTACAAAGTGAATAA
- Protein Sequence
- MDTGILDERSREFLETADQYITEHGHQHVSEEDSKQLVSNQHNLTDEFRIDENGELSHHTSGYYDTSDMLSGDGSTTLTEDDHRLANELAAELAQQNKSLVDGSHHDTHLMTSYLYSTDFDLNTNSKHSSQNQSHINNQQIITSESLIEVEASESDYHAEIQNNLPHKKRFRKRETAPTPLRSIHPKCYKCKQCGEQFNSQSAFTVHRAIHTPKKVNGRMPFLCEICDKHFTHQIKFFEHLKLHYEPQQSKVIVVTTDSGTSPHHVNYQNHGTQESTNNENQYIEENIEDPPQLHDLPPLQSYRLTEESIEDDKHCIFSSDGSILAAQLQQPFPTCHLCGRNFRRLKALEIHMASVHPQPATVVTVKQDCLEEFSDPEDLMEGIRHMVPGVADTESETDEKQPIQDWEYNGENNANHEDTIIKPKQEENNCLLNENDNGENSRAEHTWEDDTDELEQIMKKNISKNLVCTQCKRKFNHRNSLLYHLRSHSGKRPHSCKLCPKSFFSSSALKVHNRLHTGDKPFECEWCGRNFRQWGDLKYHIASLHSESKQFQCEFCGKDFARKYSLIVHRRIHTGEKNYVCEFCKKTFRASSYLQNHRRIHTGEKPYKCDTCGKAFRVRSDMRRHTVVHRKDTVNSIQINSYAGHVSGIVASSDMSIHLTKLEVKDKVIAESTEDIKFHENFSHNSNQLLTADEVSAPLNLNLRAQDDGNNDESTNFEQFNGRQEIIDRETNTLYVWIPSNTEQLLQSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00019610;
- 90% Identity
- iTF_01499822; iTF_01330779; iTF_00308996; iTF_01170071; iTF_00340796;
- 80% Identity
- -