Schi009931.1
Basic Information
- Insect
- Schlechtendalia chinensis
- Gene Symbol
- lrrfip2
- Assembly
- GCA_019022885.1
- Location
- CM032346.1:9060640-9063758[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.2e-88 5.2e-84 282.5 26.4 1 300 132 417 132 417 0.92 2 2 0.053 1.3e+03 -1.2 0.8 135 164 451 480 424 489 0.63
Sequence Information
- Coding Sequence
- ATGAACAGTGACGGCCGGATCGGCGATAACGCGAATGCGTCTTCGTGCGAAGAATCAGTCTCCGAAAGAGGAGAAAAAAGAGGGCACGTCACTCACGTTTACTTAAATCGAACGCCGGACGACGAAAACGACCTTATCTGTTCGACCGCCTCCCCGTCCACGGGCGATTGCCGGCCGTGTTTAACCGACGACGATGGAAGTTATATCGTCGACGACGACGACGACACGGCTGGGCCGACACCGAATAACAACCACATGAGTATTCCCAGCGGTGTCCGACGGAATAATTGTAGCAACGGCGTGGTCGGCGATCGCTGCGACGCGTCTCCACTAAAGACGAGCGATTCCGAAGTCGGCGGAATCGTCACGTTCCTGGACATGAGCGTCGAGGAAGCAGAATCGCGTTTAATTGCAAAGCGACAAGCCCGAACTGAGGCTAGGGAAATTCGTATGCGAGAAATTGAACGCCAACAAAGAGAGGTCGAAGAAAATGCTGACCGAGTTTTCGATATGTATGCAACTACAGATATAAATCTAGGTTCTCGAATGCCTAATCTGCGACCAACCACTTCCATACCAAATACAAACAGTTATCCATCTAATCGACACAATTCGGTCGATTCTCTGGACGAATCTCCTTCTAATTTTAGAGATTACAGGATGGAATTAAGAGAGTTGGAAGAAAAATTTCGAAAATCTATGGTACAAAATGCTCAACTTGACAATGAAAAGGCAGCTGCTATATATACAGTCGAACTGTATAAAGATAAATATACTCATATTGAAGAAGAACTCATCCATATTAAAAGGAAAAACAGAGAAAGCTGTAGAGAAAACGAAAAACTAAAACGTTTATTAGCTACTCAGAAATCAGAATGTATATTATTGAAAAAAGAATTATTAGAACGTGACAAACTTATTGAAGAAAAAGGTCTTGTTATTATTAACACAGAGGAAGAAGATCAAATTAATAATAAAATAAAACGTTCCTTAGTCTCTGTTGAAAATGCGGAATTGTTACAAGATGGAGAAGGTTGTTTAGATGTAAGACTTAAAAAGTTTTCTGAAGAACGTAACAATTATATAGATGAAATTAACTGTCTCAAATTAGAGTTACAAGAGGCCAAAAGGCACAATAATATTAATCAATGTTCAGACTCTGATGATGTGGAACATGCACAAAAAGAAACAAATAAGTTACTTAGCAGTTATAAATTCAAATGGCAAAAGGCAGAACAAAATATTTCTACATTACAAGCAAATGTAGCTCGACTTGAAACTCAAGTTATTCGATACAAGACCGCTTGTGAGACATGTGAAGCAGTAGAAAATGGACTTAAAATTGAAAAAAGAAAATTGCAACGCGAGCTTCGAGAATCTCTTTCAAAAATTGAAGAGCTGGAAACATCTAATATGCATTTGTTGAAACGTTTTGATAAATTAAAAAATGCAAAATCGAGTTTGTTGAAGGATTTATGA
- Protein Sequence
- MNSDGRIGDNANASSCEESVSERGEKRGHVTHVYLNRTPDDENDLICSTASPSTGDCRPCLTDDDGSYIVDDDDDTAGPTPNNNHMSIPSGVRRNNCSNGVVGDRCDASPLKTSDSEVGGIVTFLDMSVEEAESRLIAKRQARTEAREIRMREIERQQREVEENADRVFDMYATTDINLGSRMPNLRPTTSIPNTNSYPSNRHNSVDSLDESPSNFRDYRMELRELEEKFRKSMVQNAQLDNEKAAAIYTVELYKDKYTHIEEELIHIKRKNRESCRENEKLKRLLATQKSECILLKKELLERDKLIEEKGLVIINTEEEDQINNKIKRSLVSVENAELLQDGEGCLDVRLKKFSEERNNYIDEINCLKLELQEAKRHNNINQCSDSDDVEHAQKETNKLLSSYKFKWQKAEQNISTLQANVARLETQVIRYKTACETCEAVENGLKIEKRKLQRELRESLSKIEELETSNMHLLKRFDKLKNAKSSLLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -