Spec006469.1
Basic Information
- Insect
- Schizotus pectinicornis
- Gene Symbol
- ECU06_1150
- Assembly
- GCA_951805265.1
- Location
- OX638204.1:7814756-7817076[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 0.0024 9.3 6.6 0.1 13 48 234 269 228 274 0.81 2 5 0.0012 4.6 7.6 0.1 21 48 339 366 322 370 0.85 3 5 0.23 9e+02 0.2 0.1 16 41 391 416 379 422 0.79 4 5 0.05 2e+02 2.4 0.0 18 43 449 474 445 479 0.89 5 5 5.8e-05 0.23 11.8 0.1 21 48 480 507 477 509 0.91
Sequence Information
- Coding Sequence
- ATGGACAACGAGCCAATACAGGGCGCTGCCCATTTAGAGATAGTCAACATAAACAGTGTTTGCCGATTATGTGCTAACCAAAAGGACAAACTCATCAGTATTTTCAGCGACGAAGGCGTTACCCACGATTTggccaacaaaattaacatgCATTTGCCTGTGAGAGTCAGCGACAATGACGAGCTTCCTTTGCAGTGCTGTTGGGACTGCGTTTCCACCCTACTTACCTTTGACGACCTCCTGCTCACCTGCGTAGAAGCCGACCAAAGGTTTCGGACGGGCCAGCTGATTGGGGGCAAGCACATGGTCCAGCACATCACTTTTGAAGCAGCTGAGGAGATCACCAATGACCACAATGACGGGATGGAACTGGAGCCGCTTTCCACAAGTCTGAATGATTTCTGCCAAGCCGAACCCCCGCCCGCCCCCGATGACGACAAAAAGCCCATGAAACAGTACAAGAACAAGAGGAAACCGCCCCTGATGGCGTTTTACCCCCAAGAGCCCACGAATTCCCTAGAAACCTACATATCAGACATTGAACAACATTTTATAGTCGACACCAACCTGGAAACCAACACCGACAGCCTCGGCGAATACAAAATCGACATAGAAGACGCCAATATACTGGcgaaagaagagaagaaactGGGCGAAGATATCGTAATCGAGGAGGATTCGCGGGGTGCGTCAGATAACGAAACGGAATCGTCAAGACaagaggaagaaaaagtttatgctTGCCCGTATTGTTCTGCGGTTTTCGTTTTGAAATGTGACGTCACCAATCATATTTGCGTCGACCACAAGGGCAAAGAATGTTTGTCACCGATAGCGCAACCAGTTCCCGATCAGAAAGTCAAAGCTGAACGcagaaaaaacaacaagatcGACCAAGACGTCATTAACGCCGCCAAAGTCGTTGTCGACGGCCGAATTTACTACAATTGCAAGGAATGCGGCAAAAATCTCCATTCGCCTTACACTTACGTCTGGCACATGAGGATCCACACCGGAGAACGACCGTACGTTTGCGATTTATGCGGCAAGCAGTTCAGGGTGTCGCAAGGGTTGGTGCGGCATCTCCGCGAGACGCATCAAGGTATCAAGAAGTTTCCGTGCGACCTCTGCGGACGGATGTTCGCGACGAGGAGGAACGTCGAGGAACATCGCCGAATCCACACGAACGAACGGCCGTACATTTGCGATCTGTGCGGCAAGGCTTTCAAGCAGAAAGCTTCGCTTTTCGTCCATAAGAGGTCgcataaaaactattttcctTTCAAATGCAGCTATTGCAATCAAGGGTTTCGAACTAAACCTCCGCTACTCGTTCATATTACCCGGCATACCGGCGAGAAGCCGTACAAGTGCGACACGTGCGGAAGAAGTTTTAGGATTAAGTACGAACTGAAGAGACACAAACTCATCCATTCGGACGAGAAGCCGTTCGTTTGTTCATTGTGCGGACTGAGTTTTCGACAGAAGCGGTATCTGAGGAACCATATGAAGTCTAATCACACTTTAGTAACGTCGTAG
- Protein Sequence
- MDNEPIQGAAHLEIVNINSVCRLCANQKDKLISIFSDEGVTHDLANKINMHLPVRVSDNDELPLQCCWDCVSTLLTFDDLLLTCVEADQRFRTGQLIGGKHMVQHITFEAAEEITNDHNDGMELEPLSTSLNDFCQAEPPPAPDDDKKPMKQYKNKRKPPLMAFYPQEPTNSLETYISDIEQHFIVDTNLETNTDSLGEYKIDIEDANILAKEEKKLGEDIVIEEDSRGASDNETESSRQEEEKVYACPYCSAVFVLKCDVTNHICVDHKGKECLSPIAQPVPDQKVKAERRKNNKIDQDVINAAKVVVDGRIYYNCKECGKNLHSPYTYVWHMRIHTGERPYVCDLCGKQFRVSQGLVRHLRETHQGIKKFPCDLCGRMFATRRNVEEHRRIHTNERPYICDLCGKAFKQKASLFVHKRSHKNYFPFKCSYCNQGFRTKPPLLVHITRHTGEKPYKCDTCGRSFRIKYELKRHKLIHSDEKPFVCSLCGLSFRQKRYLRNHMKSNHTLVTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01330041;
- 90% Identity
- iTF_01330041;
- 80% Identity
- iTF_01330041;