Spec012543.1
Basic Information
- Insect
- Schizotus pectinicornis
- Gene Symbol
- -
- Assembly
- GCA_951805265.1
- Location
- OX638207.1:9103415-9104729[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 0.002 7.8 6.8 0.4 21 51 218 248 190 249 0.88 2 6 0.00059 2.3 8.5 0.1 21 44 246 269 242 271 0.93 3 6 0.0032 12 6.2 0.0 18 52 270 304 269 306 0.91 4 6 0.00016 0.61 10.4 0.2 21 52 329 360 318 362 0.91 5 6 0.062 2.5e+02 2.1 0.1 21 44 357 380 355 384 0.89 6 6 0.14 5.4e+02 0.9 0.0 21 44 385 408 380 414 0.85
Sequence Information
- Coding Sequence
- ATGTTTGAGCACTCTTTCAGcgacaaaacttttgttaatcaCTACAAAACCTTTTGTGGAATTGAGGTAAAACCTGACGACAATCTTCCTCAAAGTGCATGCGAAAATTGCATGACCAAGTTAATGTGTATGTTTGAATTCAAGAACAAGTGCGCCAGATCagagaagctgttagaagcttTACCAGCAAATGGTAAAATTCACTTTAACAGTGAAAATAATGGAAATGAAACCACTGTTAGCTACGCTCCCACCGACgaaatttatataaaagaAGAGAGTTGCCATAGTGAGGAAAATAGCTCAACTTTTGTTGACAATATTGATATAAGTGAGAACTCTCATGTTGAGGAAATTGATAACTCTAAATTAAAAGATGATGATTTAGAATCAGAAAGTTATACTTATGAGAAAACCGTCCATTCTGAGCTTGAAGGTGGAAAAGACATCCGGAGTCAAAAAGTAGAGGTGCCAAAAACTTCAAAGATGCGAAATCTTACATGTTGTGAAGAAACGTTCACTACTTACCTTAGTTACATTAGACACTATAAGAAAATGAACCATCAAAAATCAGACAGGAACCACAAATGTCCacattgtgaaaaatttttcCGTCGATGTAAACTAAAGCAACATATTTTATCACATACGAAAGAGAAACCATTTGCCTGCAAACTTTGCTCCATGCAGTTTAGTTTAGCAGGTAATTTGAAGCGGCACATAAATATACATACGGGCGAAAAACCTCATCGTTGTGATATATGCGGAAAAGTGTTTGGTTCAAAACGATATTTGCAAAGGCACATGCGTTCACATGGCGAAAAGTCCTTTCTGTGCAGTCTATGTGGTAAAAGTTTCAGGACCAACGATGGCTTAAAAAGGCATTTTAACATTCACACAGGAGTGAAGCCGTACGCGTGTGAGTTTTGCAGCAAACGTTTTTCGCAAGGGGGAACGTTGAAAACGCATATTCTGGTTCACACCGGGGAAAAACCATTTATCTGCAAGGTGTGTTCAAAGAGTTTTAAGCAGATAGCGCATTTACGCACTCACTTGAGGCTGCACAGGGGAGAGAAACCCCACAGCTGTTCGTTTTGCACAAAATCGTTTTCACAGCTAGCTGCGTTGAGGATACATGTAAGAACTCACACCGGGGAAACACCATATGTTTGCAACGTTTGCTCTAAGCGGTTTAAGTCACCAAACAATTTCAAGAAGCACAAGAAGAAGCATGATACAGCAACTAACAACCAAATTGTGAAGTGA
- Protein Sequence
- MFEHSFSDKTFVNHYKTFCGIEVKPDDNLPQSACENCMTKLMCMFEFKNKCARSEKLLEALPANGKIHFNSENNGNETTVSYAPTDEIYIKEESCHSEENSSTFVDNIDISENSHVEEIDNSKLKDDDLESESYTYEKTVHSELEGGKDIRSQKVEVPKTSKMRNLTCCEETFTTYLSYIRHYKKMNHQKSDRNHKCPHCEKFFRRCKLKQHILSHTKEKPFACKLCSMQFSLAGNLKRHINIHTGEKPHRCDICGKVFGSKRYLQRHMRSHGEKSFLCSLCGKSFRTNDGLKRHFNIHTGVKPYACEFCSKRFSQGGTLKTHILVHTGEKPFICKVCSKSFKQIAHLRTHLRLHRGEKPHSCSFCTKSFSQLAALRIHVRTHTGETPYVCNVCSKRFKSPNNFKKHKKKHDTATNNQIVK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01330040;
- 90% Identity
- iTF_01330040;
- 80% Identity
- iTF_01330040;