Basic Information

Insect: Schizotus pectinicornis
Gene Symbol: chn
Assembly: GCA_951805265.1
Location: OX638209.1:5087901-5090681[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.00043 0.029 14.9 0.7 1 23 258 280 258 280 0.98

2 8 0.0011 0.072 13.7 4.0 1 23 286 309 286 309 0.96

3 8 0.0024 0.16 12.6 4.0 1 23 406 428 406 428 0.98

4 8 0.092 6.2 7.6 0.1 1 23 432 455 432 455 0.96

5 8 1.1 72 4.3 0.2 3 23 460 480 459 481 0.90

6 8 0.00063 0.043 14.4 0.7 1 23 615 637 615 637 0.98

7 8 0.00019 0.013 16.1 0.9 1 23 660 682 660 682 0.98

8 8 1.5 1e+02 3.8 8.1 1 23 789 812 789 812 0.87

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.00043	0.029	14.9	0.7	1	23	258	280	258	280	0.98
2	8	0.0011	0.072	13.7	4.0	1	23	286	309	286	309	0.96
3	8	0.0024	0.16	12.6	4.0	1	23	406	428	406	428	0.98
4	8	0.092	6.2	7.6	0.1	1	23	432	455	432	455	0.96
5	8	1.1	72	4.3	0.2	3	23	460	480	459	481	0.90
6	8	0.00063	0.043	14.4	0.7	1	23	615	637	615	637	0.98
7	8	0.00019	0.013	16.1	0.9	1	23	660	682	660	682	0.98
8	8	1.5	1e+02	3.8	8.1	1	23	789	812	789	812	0.87

Sequence Information

Coding Sequence: ATGGAGGTGGCAATGCCCATGTCGGGTACTGCCATTGATTGCTATGAGGACATGTTCAAGGAGATAACCAGGAAGCTGTACGGCGAGGACGGTTTACCGGAGTTAAGTGGAACCGACAGACTCCCCAACAGTCAGGACCGAGGCTTAACTCCCATTGATTACGATGTCGACAATCCAATTTTGAAGCCGGAAGAACACCTAACTGCATTTGGATTAGCCGCTCTAATGCAGAATGGGTTCCCCACAACAGGCATTTTGAATTCAACTTTTCAACAACACAAATCCGTTGCGACTCTAGAAGATAAATGGACGGCGAACGAAGATTGTTTACAGTGGACCCAGTCGAAGATCGCCACGTATAATCCTTCgcaaaaattgtttcgttGTACTGAATGTGATTGCGTTGGGTATTTGCCTCGAGTTGCGGAGCATTGGTTAGGGACTCACTCGAATTTAAGAGCTTTTCAATGCTCGCAATGTCCGTATGAAAGTGCGTGGGCGAGATGTGTCCGGATGCATCTGAATCGACAGCACAACATCAATACTGATGAAACTTCCGAAACTTTACTCAAGAATAACCCAGTTCTCCAAGAAATCACCAAGTATCTTCAGAGACTTAAAAACAAGCTAGAAAATAGTTGCTCGAAACCCCACTCTAGTAATTCACAAATTTTAGACGATTTCCAATCAGCCACTAACACCTCGAGTTCCCATCTCAGCGGCCAAGTAGTTTCTAATAATTCCGAAACCAACAGCGGTTCCAGCAAACGTTACAGTTGTACTTACTGCCCTTACGCAACTGATCGTCGTGATCTCTTCACGAGACACGAAAACATCCACAGAGAGGAAAAGCCGTTCCAGTGCTACGTTTGCCAGAAACAATTCAATAGAGCCGATCATGTCAAAAAACACTTTCTGCGAATGCACCGGGAACATCCCTATGACTTAAACAGGATCCGTCGACACCCTCCAAAGAACGCGTCAGGAATGTCTTATTACCAAAAGTACAATGCAAACTCGACAAATCAATCACCCGACTCGATATCTTCCTTAAGTAACATCAACTCCCTCTCGATTCCCAACAGTTTTAATAACATGTCTCGGAATTCTGCCAACGTTAGACCGGTAAATAGCGCTGACGTAAAAACAGGGATCACCAACGTCAAATCCGGGATTATGTCAAAAGGAAACAGTAAGAAGAAAGGCGAGAAGAGATTttcttgttgttattgttcCTGGTCAGGAGTCGATAACTGGTGCTTGAAACGCCACATGAACACACATTTGAAACCCTTTGTCTGTGGTCTTTGCGATTACAAAGCCGCCAGATCTGAGAGACTGGCCACGCACGTTCTTAAGGTCCACAACAAGAGAGCTTGCGGAAAATGCAGTTTTTTGGCGGACGATCCGGGCCAACTGACAGTTCACCAGCAAGAACACCACCCTCTGGAGCAAAGGAATCGATCCGGCAACAACATTTTGAGAAACACGTCTTTCAACACTAGCTCGACAGCAACAGTTTCGTCTTCTtgcagCCAAGGTCAGAGCAGTTTGAAGCCTCATGAGCTGAGTGCAGCCACCGCGCTTTTGCAACACAGCAACCGTTTGCTCCAATCTGACAGTAAAGCGTGGAAGAATCACACCCCCAAGCAGCACGGGGCTGCTCGACTCTTCAATTACATGGAAGCAAGTGATGGTTCGGAGCCGGAATCGGAATCTCGGGGAGCTGAAGACATGAGTCGGCTGAACTTGAACCATAGAATTCAGTCGGATTTTCTTGAGGCGGGGGATGCTGGTAGCCAGGCTGATGAAGAAGAGGGTGAAGAGGTGGAACTCCCTTTGTTCGTCTGCCCTACGTGCGGCTGCGAGTTTGAGGACGACATGTCCCTGGAAACACACCAATACACGCACCGTCACAGTACTGCATCTCCCGCCAAATCCGACTATTCCAAAGAGAATGTCAATCCTAACTTGAAATATCGATGTTGCTTGTGTGATTACGCTTTTGATAGCCAATCCTCTGTTATGGCACACATGGTTTCACATTCCAGTTTAAGTAGTGGGACGCAACAGACTAAAGGTAACTTGACGAAACGTCTTCGAAAACAGATCAGGCCGAAGAAGATGGTGTTGCCGTTTTGGGAGTTAAATGAAGTTGAGGTCATGCGCCATCTGAATGGAAAATTGACTGAGTGGCAGCGGACTTCTAATTCGACCAAGATGGAAGTGTCCAAGAAGTACATGGCTAAAATGGTAACTCGAGGAGGGCTATATTGCGTTTTGTGCAAAAACTCCAGCATCAGCAGGTATCACACCAAGGGAAGTTTAGCTTTGCATTATTATTGGAAACATCTTAACAAGAAGTTCAAGTGTGAACACTGCGATTTGCATTTTCGCCACCGGTACCAGTGCGTGCTGCATGCCAGTCGCGAACACATCAACAGACAACCGATCCTTAAGTCTCAAACAGTGCCTACTAAAGAACCAATTCACTCTGCAGTACCTGCTTCCCAAGAGGCTCATCATTTCTTCTCCAATCCTCAGACCGTTACTGTACCTGACGCATCCACTAGTGCGCATAAGTTAGGGATGTCATTTTTTGACCATTCGTTCGTTCATTCTAGTAATACCATTAACAGCCATATGCCAATTATCATTCCAACGTTTCCACCAAATTGA
Protein Sequence: MEVAMPMSGTAIDCYEDMFKEITRKLYGEDGLPELSGTDRLPNSQDRGLTPIDYDVDNPILKPEEHLTAFGLAALMQNGFPTTGILNSTFQQHKSVATLEDKWTANEDCLQWTQSKIATYNPSQKLFRCTECDCVGYLPRVAEHWLGTHSNLRAFQCSQCPYESAWARCVRMHLNRQHNINTDETSETLLKNNPVLQEITKYLQRLKNKLENSCSKPHSSNSQILDDFQSATNTSSSHLSGQVVSNNSETNSGSSKRYSCTYCPYATDRRDLFTRHENIHREEKPFQCYVCQKQFNRADHVKKHFLRMHREHPYDLNRIRRHPPKNASGMSYYQKYNANSTNQSPDSISSLSNINSLSIPNSFNNMSRNSANVRPVNSADVKTGITNVKSGIMSKGNSKKKGEKRFSCCYCSWSGVDNWCLKRHMNTHLKPFVCGLCDYKAARSERLATHVLKVHNKRACGKCSFLADDPGQLTVHQQEHHPLEQRNRSGNNILRNTSFNTSSTATVSSSCSQGQSSLKPHELSAATALLQHSNRLLQSDSKAWKNHTPKQHGAARLFNYMEASDGSEPESESRGAEDMSRLNLNHRIQSDFLEAGDAGSQADEEEGEEVELPLFVCPTCGCEFEDDMSLETHQYTHRHSTASPAKSDYSKENVNPNLKYRCCLCDYAFDSQSSVMAHMVSHSSLSSGTQQTKGNLTKRLRKQIRPKKMVLPFWELNEVEVMRHLNGKLTEWQRTSNSTKMEVSKKYMAKMVTRGGLYCVLCKNSSISRYHTKGSLALHYYWKHLNKKFKCEHCDLHFRHRYQCVLHASREHINRQPILKSQTVPTKEPIHSAVPASQEAHHFFSNPQTVTVPDASTSAHKLGMSFFDHSFVHSSNTINSHMPIIIPTFPPN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01480476;
90% Identity: iTF_01283847;
80% Identity: -