Basic Information

Insect: Pyrochroa serraticornis
Gene Symbol: chn
Assembly: GCA_905333025.1
Location: HG995160.1:9992958-9995740[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.00048 0.033 14.9 0.7 1 23 259 281 259 281 0.98

2 8 0.0012 0.082 13.7 4.0 1 23 287 310 287 310 0.96

3 8 0.0026 0.18 12.6 4.0 1 23 407 429 407 429 0.98

4 8 0.1 7.1 7.6 0.1 1 23 433 456 433 456 0.96

5 8 1.2 81 4.3 0.2 3 23 461 481 460 482 0.90

6 8 0.0007 0.049 14.4 0.7 1 23 616 638 616 638 0.98

7 8 0.00011 0.0076 17.0 0.2 1 23 661 683 661 683 0.98

8 8 1.7 1.2e+02 3.8 8.1 1 23 790 813 790 813 0.87

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.00048	0.033	14.9	0.7	1	23	259	281	259	281	0.98
2	8	0.0012	0.082	13.7	4.0	1	23	287	310	287	310	0.96
3	8	0.0026	0.18	12.6	4.0	1	23	407	429	407	429	0.98
4	8	0.1	7.1	7.6	0.1	1	23	433	456	433	456	0.96
5	8	1.2	81	4.3	0.2	3	23	461	481	460	482	0.90
6	8	0.0007	0.049	14.4	0.7	1	23	616	638	616	638	0.98
7	8	0.00011	0.0076	17.0	0.2	1	23	661	683	661	683	0.98
8	8	1.7	1.2e+02	3.8	8.1	1	23	790	813	790	813	0.87

Sequence Information

Coding Sequence: ATGGAGGTGGCAATGCCCATGTCGGGTACTGCCATCGATTGCTATGAAGACATGTTTAAGGAAATAACCAGAAAATTGTACGGCGAAGACGGTTTACCGGAGTTGAGTGGAACTGACAGACTCCCTAATAGTCAAGACCGCGGCTTAACTCCCATTGATTACGATGTAGACAATCCAATTTTAAAGCCGGAAGAACATCTAACTGCATTTGGTTTAGCTGCTTTGATGCAGAATGGTTTTCCCACAACAGGGATTTTGAATTCAACTTTTCAACAGCACAAACCTGCTACAACAACTGTAGAAGATAAATGGACAGCGAACGAAGATAGTTTACAATGGACTCAATCGAAGATTGCTACGTATAATCCTTCGCAAAAATTATTTCGTTGTACAGAATGTGATTGTGTTGGGTATTTGCCTCGAGTTGCCGAGCATTGGTTAGGGACTCACTCGAATTTAAGAGCTTTTCAATGTTCGCAATGTCCTTATGAAAGTGCGTGGGCGAGGTGTGTCCGGATGCATCTGAATCGACAACACAATATCAATACTGACGAAACTTCTGAAACTTTACTAAAAAATAACCCGGTTCTCCAAGAAATCACCAAATATCTCCAAAGACTTAAGAATAAACTAGAAAGTAGTTGCTCGAAACCCCATGCTAGTAATTCGCAAATTCTAGACGATTTCCAATCAGCCACAAACACATCAAGCTCCCATCTCAGCGGCCAAGTAGTTTCTAATAGTTCAGAAAGCAACAACGGTTCCAGCAAACGATACAGCTGTACTTACTGTCCTTACGCTACTGACAGACGTGACCTGTTCACGAGACACGAAAATATCCACAGAGAAGAAAAGCCCTTTCAATGTTACGTTTGTCAGAAACAATTCAATAGAGCTGATCACGTCAAGAAACATTTCCTGCGAATGCACCGGGAACATCCCTATGATTTAAATAGGATCCGTCGACACCCTCCCAAGAACGCTTCGGGCATGTCTTATTATCAAAAATACAATGCAAATTCGACCAATCAATCACCTGATTCGATATCGTCTTTAAGTAACATCAATTCTCTTTCCATTCCCAATGGTTTTAATAACATGTCTCGGAATTCGTCTAATATTAGACCAGGAAATAGTGGTGATGTAAAAACAGGAATTACTAACGTCAAATCCGGCATTATGTCGAAAGGAAGTAGTAAGAAGAAAGGCGAGAAGAGGTTTTCTTGTTGTTATTGTTCTTGGTCGGGTGTCGATAATTGGTGTTTGAAACGCCACATGAACACTCATTTAAAACCGTTCGTTTGTGGTCTATGCGATTATAAAGCCGCAAGATCTGAGCGACTAGCAACTCACGTCCTTAAAGTACACAACAAAAGAGCTTGCGGAAAATGTAGTTTTTTGGCCGATGATCCAGGACAATTAACGGTTCATCAGCAAGAACACCATCCTTTGGAGCAAAGAAGTCGATCTGGAAACAATATTTTGAGGAACACGTCTTTTAATACTAGTTCAGCAACAACAGTTTCGTCGTCTTGCAGCCAAGGTCAGAGCAGTTTGAAACCTCATGAATTGAGTGCAGCTGCAGCACTTTTGCAGCACAGTAATCGTCTTCTACAATCTGACAGTAAAGCTTGGAAGAATCATACTCCCAAACAGCACGGGGCTGCTCGTCTCTTCAATTATATGGAAGCAAGTGATGGTTCAGAACCAGAATCGGAATCTCGAGGAGCTGAAGATATGAGCCGGTTGAATTTGAACCATAGAATTCAGTCGGATTTTCTTGAGGCGGGGGATGTTGGTAGCCAGGCTGATGAAGAAGAGGGTGAAGAGGTGGAACTCCCTTTGTTCGTCTGCCCTACGTGCGGCTGCGAGTTTGAGGACGATATGTCCCTAGAAACACACCAATACACGCACCGTCACAGTACTGCATCTCCCGCCAAATCCGACTATTCCAAAGAGAATGTCAATCCTAACTTGAAATATCGATGTCGCTTGTGTGATTACGCTTTTGATAGCCAATCTTCTGTTATGGCCCATATGGTTTCACATTCTAGTTTAACAAATGGGCCTCAACAGACTAAAGCTAACTTAACGAAACGTCCCCGAAAACAGAGCCGGCCGAAAAAAATGGTTCTGCCGTTTTGGGAGTTAAACGAAGTTGAGGTTATGCGTCATCTAAATGGAAAATTGAGTGAATGGCAGAAAACTTCTAATTCGACCAAGATGGAAGTTTCTGAAAAATATATGGCTAAAATGGTAACTAGAGGGGGATTGTATTGCGTTTTGTGTAAAAACTCCAGCATCAGTAGGTACCATACCAAAGGAAGTTTAGCTTTGCATTACTATTGGAAGCATCTTAACAAGAAATTCAAGTGTGAACATTGCGATTTACACTTTCGCCACCGGTACCAGTGCGTGCTGCATGCTAGTCGAGAACACATCAACAGACAACCGATCCTTAAGTCTCAAACAGTGCCTACTAAAGAACCAATTCACTCTGCAGTACCTGCTTCCCAAGAGGCTCATCATTTCTTCTCCAATTCTCAAACCGTTACTGTACCTGACGCATCCACTAGCGCACATAAGTTAGGGATGTCATTTTTTGACCATTCGTTCGTTCATTCTAGTAATACCATTAACAGCCACATGCCAATTATCATTCCAACGTTTCCACCGAATTGA
Protein Sequence: MEVAMPMSGTAIDCYEDMFKEITRKLYGEDGLPELSGTDRLPNSQDRGLTPIDYDVDNPILKPEEHLTAFGLAALMQNGFPTTGILNSTFQQHKPATTTVEDKWTANEDSLQWTQSKIATYNPSQKLFRCTECDCVGYLPRVAEHWLGTHSNLRAFQCSQCPYESAWARCVRMHLNRQHNINTDETSETLLKNNPVLQEITKYLQRLKNKLESSCSKPHASNSQILDDFQSATNTSSSHLSGQVVSNSSESNNGSSKRYSCTYCPYATDRRDLFTRHENIHREEKPFQCYVCQKQFNRADHVKKHFLRMHREHPYDLNRIRRHPPKNASGMSYYQKYNANSTNQSPDSISSLSNINSLSIPNGFNNMSRNSSNIRPGNSGDVKTGITNVKSGIMSKGSSKKKGEKRFSCCYCSWSGVDNWCLKRHMNTHLKPFVCGLCDYKAARSERLATHVLKVHNKRACGKCSFLADDPGQLTVHQQEHHPLEQRSRSGNNILRNTSFNTSSATTVSSSCSQGQSSLKPHELSAAAALLQHSNRLLQSDSKAWKNHTPKQHGAARLFNYMEASDGSEPESESRGAEDMSRLNLNHRIQSDFLEAGDVGSQADEEEGEEVELPLFVCPTCGCEFEDDMSLETHQYTHRHSTASPAKSDYSKENVNPNLKYRCRLCDYAFDSQSSVMAHMVSHSSLTNGPQQTKANLTKRPRKQSRPKKMVLPFWELNEVEVMRHLNGKLSEWQKTSNSTKMEVSEKYMAKMVTRGGLYCVLCKNSSISRYHTKGSLALHYYWKHLNKKFKCEHCDLHFRHRYQCVLHASREHINRQPILKSQTVPTKEPIHSAVPASQEAHHFFSNSQTVTVPDASTSAHKLGMSFFDHSFVHSSNTINSHMPIIIPTFPPN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01480476;
90% Identity: iTF_01330198;
80% Identity: -