Basic Information

Insect: Schizotus pectinicornis
Gene Symbol: prdm10
Assembly: GCA_951805265.1
Location: OX638207.1:1304814-1309280[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 7.6e-05 0.0052 17.3 0.2 2 23 443 464 442 464 0.96

2 13 1.2 85 4.1 0.1 2 16 496 510 495 520 0.89

3 13 0.0019 0.13 12.9 0.2 1 23 539 561 539 562 0.93

4 13 0.00011 0.0075 16.8 0.5 1 23 572 594 572 594 0.96

5 13 3.7e-05 0.0026 18.3 2.7 1 23 609 631 609 631 0.98

6 13 0.00063 0.043 14.4 0.9 2 23 640 661 639 661 0.97

7 13 0.019 1.3 9.7 0.7 1 20 668 687 668 690 0.91

8 13 0.0018 0.12 13.0 3.0 1 23 696 719 696 719 0.96

9 13 0.0059 0.4 11.4 4.7 1 23 724 746 724 746 0.97

10 13 0.0012 0.084 13.5 4.0 1 23 752 775 752 775 0.89

11 13 0.0077 0.53 11.0 1.6 1 23 812 835 812 835 0.97

12 13 0.00019 0.013 16.0 3.9 1 23 857 880 857 880 0.97

13 13 0.0014 0.097 13.3 3.5 2 23 919 941 918 941 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	7.6e-05	0.0052	17.3	0.2	2	23	443	464	442	464	0.96
2	13	1.2	85	4.1	0.1	2	16	496	510	495	520	0.89
3	13	0.0019	0.13	12.9	0.2	1	23	539	561	539	562	0.93
4	13	0.00011	0.0075	16.8	0.5	1	23	572	594	572	594	0.96
5	13	3.7e-05	0.0026	18.3	2.7	1	23	609	631	609	631	0.98
6	13	0.00063	0.043	14.4	0.9	2	23	640	661	639	661	0.97
7	13	0.019	1.3	9.7	0.7	1	20	668	687	668	690	0.91
8	13	0.0018	0.12	13.0	3.0	1	23	696	719	696	719	0.96
9	13	0.0059	0.4	11.4	4.7	1	23	724	746	724	746	0.97
10	13	0.0012	0.084	13.5	4.0	1	23	752	775	752	775	0.89
11	13	0.0077	0.53	11.0	1.6	1	23	812	835	812	835	0.97
12	13	0.00019	0.013	16.0	3.9	1	23	857	880	857	880	0.97
13	13	0.0014	0.097	13.3	3.5	2	23	919	941	918	941	0.96

Sequence Information

Coding Sequence: ATGGATACGATAGTGGAAGGGCCCCCCGAGGACGGGGCCCAAGATTTGAATTTAGTAGACGCGGCCGAATGGGCCGTCGACAATCCAGGCATAGTAAACAACAACTCCACTTTTTTGTACATTGCTGTGGAGTACGTTAAAGATGAACTGAAGTTGGAGCAAACGAATTTGGTGCAACAACAGGACGCTTATGCAGATTTCGAGCAACATGTCAGCCCTTTGGACCCCAACATGAGTTCTGTGGCGCGCTATAGCCCCGTCTATAGCGAGCCGTCAGGTGAATACAACCCGATAGTGATCCACCAGCTGGTGCAGCCAGATAACACCGGCCAAAACGAACTAGTCAacaacctaacctcaaattcaCCCCTCGAAGTGATGCCGGTTTTATGCAACAACGACATCAGGGAAGTGGTGGAAAACCAATATTTGCAAATGGTAACGCCAGACCCTTCCTCGGGACAGTCGGAACTGCAGATGGTTTCTGAGCCAGAACAAACCGAAGTTGAACTGCTGATAACAGATCAAGAAACTGGCATCTCTTACAGTGTGCGTTCTCAAGAGTTCCTAGTTGGACGTTGTCTCGAGGACGAACAACTGTTGAATGCGCTAACTCCCGACCCTCTTCTGGAATCGGATTTGTTGGCTTTGGACGAAAACACTCTTAAAACTGAATTAAGTGATGACATCATCAATTCTGAGATGGTGCCAACTGTTGATTCAGCAGTTGTCAGCAATTAtatttcgagtttgacagaaAGCGATCTCAAGAATGTCGTGGACAACGAAAATCAGTACAAAATAGAAACCAGGCGGAATAGAAGCAGTGACGTGGAATTTGAGAACCAATTACtttcacgAGTGTACAGCATCATCGATAAACCGGTACCGTCAAGAGCCAGGGCCACTCTTCCCGAGTCTTATCTTACAATTAGTAAAGTGGATGAAActggAATCGGCGTTTTTGCCAAGAAAAGTATTCCCAAACGGACGCAATTTGGCCCCCTCACTGGCGTTTTAACAACACACAACATACTTGATGTAAAAGACGAGATTGGTACTTTATTATACTTGATTGAAGGCGAAGGGGGTGCTGTGAATCGACTCGATGTTTCAGACGAAAACATTTCAAATTGGATGAGTTTTGTCAGGAAAGCCGCTGATTACAGCgaacaaaatttggtaatGAGTCAAGAAGGCAACGCTCTATATTTTACTACAACGAAAAACGTTCTTCCTAAACAAGAATTGAAggttggcTACGGCACAAATTATGCCAATCGACACAAATTAACCCTGTTCCATCCACCCGTTGAAAAATCTTGGCCGTGTTTCGAATGCTCTTCCGTCTTTTCTACATCGGACGAGTTGCAGAAACATTTAAATGTCCACGACGACGAGAGGGACGAAAACACAAAACCTCgcaagaaattttggaaaactaacaaaagaaaaatgagtCCTAAAGGCAACAGTGAAGCCCTCAAATGCAATAATTGTAACGAACTGTTTGTGCAACCGGGGAAGCTCGCCTTGCGCAACCACCTAATAGAGAAACACTTAATGAGCAAGTTTTCCTCTATTGACGAGCATTTCTCGTTTGTTTTAAATTACTACAAGTGCGACGCTTGCGGGGCAGTCTTCAGCTCTGAAGCGCTCCTGAAGGTCCATGGATATCTTCACCATTCGGACAGTTCCGACGAGCAAACCAACCACATTTGCCCGGCGTGTCAACGAAAATTCCCAACTCAACGTCAACTAGTCGCCCATATATCCACACATAACTTGGCGGCCTCCACCGCAACTGCTGAACAGCCCGAAACCTTCAAATGCACCGTCTGCCACAAAATGTTTGCCCTTCGAGAGCGACTGCGGCGCCACATGTTGGTCCATGGTTCCGAGGAGTCGAAGCCGCTCCAGTGCAAGACTTGCAACAAACGCTTCTTGAACAACTCCGCGTTGGCCGGCCATTTAAAGACCCATTTTGtcggcaaaaaaattttcgagTGTCCCATTTGCAAAGAAAGTTTCGATCACGTTctgaaattgaaattgcacGTGCCGAAACATTGCGAGAACAATTTGTATTCGTGTCCTCATTGCacgaaagttttcaaaaagtacAGCATCATACGTAAACATATCAGGGCGTTCCATTGTGACCAAAAACATTCTTGTCAGCATTGTTCCAAATTGTTTCCGACTTTGGACAAGTTAAAAATGCATTTGTTGCGTCATTCCGACCATAGAGAATTTTTGTGCGCCGATTGCGGCAAACAGTTCAAACGTAAAGACAAATTGAAGGAGCACTGCAAACGCATGCACTCCGAGGAACGAGAGAACGACGTGCCCAGACCCCAAAAGCCCGCCGTCCAACAACCGTCGCGCAAATTAAGTCCGAAAGTCGAACCGACCGATTTCCATCGTTTCATTTATAAATGTCACAGTTGCTTGGTCGGGTTCAAGCGGCGGGGAATGTTGGTGAATCATTTGGCGAAGCGACATCCGGACATCCCGCCCGATTCGGTTCCCGAATTGAATCTGCCGATTCTCCAGACGACCCGCGATTATTACTGTCAGCATTGCGATAAAGTTTACAAGAGCAGTTCGAAGAGGAAGGCTCACATATTGAAGAATCATCCCGGTGCCGCGTTGCCGATGAGCAACAGGAAACAGGGATCGTTTTCGGACGGGTCCGGCTTGCCGAATCCGACTTTTTCGCAAACTGTCGGCAGCATCACGACCCGACCTCAAAGTTGCACGTGGTGCCACAAACAGTACGCCAGCAAAGCCAAATTGTTGCAACATCAACGGAAGAAACACAGCGAACAGTTGGCGCAACAGAACGGGGAGAAGGGCGGCGGACTGAGCGACCAAAACACGGGACAAGAGAAGACGGAACCCGAGAGCGAAGAAAATTGCCTAACGGATGAGTATAAGGTGACGGAAGCGGACATTTTGAACAGCGCCCTGGAGGAGTACGAAGAGCGCGAGGGAGAGCAGTACCATCTGGTGGCGATAGGGGGCAGCGATAATTTCGGTCAAAGCAACGATTCTCATTTGTATCGACTCCTGACCACTAGCAACGgtatgGTGCCCCCGCGTTGA
Protein Sequence: MDTIVEGPPEDGAQDLNLVDAAEWAVDNPGIVNNNSTFLYIAVEYVKDELKLEQTNLVQQQDAYADFEQHVSPLDPNMSSVARYSPVYSEPSGEYNPIVIHQLVQPDNTGQNELVNNLTSNSPLEVMPVLCNNDIREVVENQYLQMVTPDPSSGQSELQMVSEPEQTEVELLITDQETGISYSVRSQEFLVGRCLEDEQLLNALTPDPLLESDLLALDENTLKTELSDDIINSEMVPTVDSAVVSNYISSLTESDLKNVVDNENQYKIETRRNRSSDVEFENQLLSRVYSIIDKPVPSRARATLPESYLTISKVDETGIGVFAKKSIPKRTQFGPLTGVLTTHNILDVKDEIGTLLYLIEGEGGAVNRLDVSDENISNWMSFVRKAADYSEQNLVMSQEGNALYFTTTKNVLPKQELKVGYGTNYANRHKLTLFHPPVEKSWPCFECSSVFSTSDELQKHLNVHDDERDENTKPRKKFWKTNKRKMSPKGNSEALKCNNCNELFVQPGKLALRNHLIEKHLMSKFSSIDEHFSFVLNYYKCDACGAVFSSEALLKVHGYLHHSDSSDEQTNHICPACQRKFPTQRQLVAHISTHNLAASTATAEQPETFKCTVCHKMFALRERLRRHMLVHGSEESKPLQCKTCNKRFLNNSALAGHLKTHFVGKKIFECPICKESFDHVLKLKLHVPKHCENNLYSCPHCTKVFKKYSIIRKHIRAFHCDQKHSCQHCSKLFPTLDKLKMHLLRHSDHREFLCADCGKQFKRKDKLKEHCKRMHSEERENDVPRPQKPAVQQPSRKLSPKVEPTDFHRFIYKCHSCLVGFKRRGMLVNHLAKRHPDIPPDSVPELNLPILQTTRDYYCQHCDKVYKSSSKRKAHILKNHPGAALPMSNRKQGSFSDGSGLPNPTFSQTVGSITTRPQSCTWCHKQYASKAKLLQHQRKKHSEQLAQQNGEKGGGLSDQNTGQEKTEPESEENCLTDEYKVTEADILNSALEEYEEREGEQYHLVAIGGSDNFGQSNDSHLYRLLTTSNGMVPPR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01283691;
90% Identity: iTF_01283691;
80% Identity: -