Basic Information

Insect: Pyrochroa serraticornis
Gene Symbol: prdm10
Assembly: GCA_905333025.1
Location: HG995156.1:20916498-20920803[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.0004 0.028 15.2 0.2 2 23 440 461 439 461 0.96

2 13 1.4 96 4.1 0.1 2 16 492 506 491 516 0.89

3 13 0.017 1.2 10.0 0.1 1 23 535 557 535 557 0.93

4 13 0.00012 0.0085 16.8 0.5 1 23 568 590 568 590 0.96

5 13 2.7e-05 0.0019 18.9 3.5 1 23 604 626 604 626 0.98

6 13 0.0018 0.13 13.1 0.8 2 23 635 656 634 656 0.97

7 13 0.021 1.5 9.8 0.7 1 20 663 682 663 685 0.91

8 13 0.002 0.14 13.0 3.0 1 23 691 714 691 714 0.96

9 13 0.0065 0.46 11.4 4.7 1 23 719 741 719 741 0.97

10 13 0.0014 0.095 13.5 4.0 1 23 747 770 747 770 0.89

11 13 0.0085 0.59 11.0 1.6 1 23 807 830 807 830 0.97

12 13 0.00021 0.015 16.0 3.9 1 23 852 875 852 875 0.97

13 13 0.0016 0.11 13.3 3.5 2 23 914 936 913 936 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.0004	0.028	15.2	0.2	2	23	440	461	439	461	0.96
2	13	1.4	96	4.1	0.1	2	16	492	506	491	516	0.89
3	13	0.017	1.2	10.0	0.1	1	23	535	557	535	557	0.93
4	13	0.00012	0.0085	16.8	0.5	1	23	568	590	568	590	0.96
5	13	2.7e-05	0.0019	18.9	3.5	1	23	604	626	604	626	0.98
6	13	0.0018	0.13	13.1	0.8	2	23	635	656	634	656	0.97
7	13	0.021	1.5	9.8	0.7	1	20	663	682	663	685	0.91
8	13	0.002	0.14	13.0	3.0	1	23	691	714	691	714	0.96
9	13	0.0065	0.46	11.4	4.7	1	23	719	741	719	741	0.97
10	13	0.0014	0.095	13.5	4.0	1	23	747	770	747	770	0.89
11	13	0.0085	0.59	11.0	1.6	1	23	807	830	807	830	0.97
12	13	0.00021	0.015	16.0	3.9	1	23	852	875	852	875	0.97
13	13	0.0016	0.11	13.3	3.5	2	23	914	936	913	936	0.96

Sequence Information

Coding Sequence: ATGGATACAATAGTGGAAGGGCCCCCCGAGGACGGGGCCCAAGACTTGAATTTAGTGGACGCTGCCGAATGGGCCGTCGATAACCCGAACATTGTTAACAACAATTCCACGTTTCTCTACATTGCTGTGGAGTACGTTAAAGACGAATTGAAATTGGAACAAACGAATTTGGTGCAGCAACCTGACGCTTACGCTGATTTTGAACAACATGTCAGCCCTTTGGACCCCAATATGAGTTCAGTGGCTCGCTATAGCCCCGTTTATAGCGAGCCGTCAGGTGAATATAACCCGATAGTTATCCACCAGTTGGTGCAGCCAAATAACAACTGTCAAAACGAACTAGTCAACAACCTAACCTCAAATTCACCTCTCGAAGTAATGCCAGTTTTATGCAACAACGACATTCGGGATGTCGTGGAAAATCAGTATTTACAAATGACTGATTCCTCGACGAACCAGTCGGAATTACAAATGGTTTCAGAACCTGAACCAACTCAAGTTGAATTGTTGATAACTGATCAAGAAACTGGCATATCTTATAGCGTTCGTTCTCAAGAATTTCTAGTTGGTCGTTGTCTTGAAGATGAACAATTATTGAACGCGTTAACACCAGATCCTTTACTGGAATCGGATTTGTTGGCTTTAGACGAAAATACTCTTAAAACTGAATTAAACGATGATATAATCAACTCTGAGATTGTGCCAACTGTTGATTCAGCAGTTGTTAGCAATTATATTTCGAGTTTAACCGAAAACGATCTCAAAAATGTCGTTGACAACGAAAACCAGTACAAAATAGAAACACGGCGAAACAGAAGTAGCGACGTTGAGTTTGAGGATCAATTACTTTCTCGAGTTTATAGCATTATCGATAAACCGGTGCCGTCAAGGGCTAGGGCTACTCTTCCCGAGTCTTACCTTGTCATTAATAAAGTGGACGAAACGGGAATCGGGGTTTTTGCCAAGAAAAGTATCCCAAAACGGACGCAATTTGGCCCCCTTACTGGCGTTTTAACGACACACAGTATGCTTGAAGTAAAAGACGAAATTGGAACTTTGTTGTATTTGATTGAAGGAGAAGATGGGGTAAATCGACTCGATGTTTCTGACGAAAACATTTCAAACTGGATGAGTTTTGTTAGGAAAGCTACGAATTACGGAGAACAAAATTTGGTAATAAGTCAAGAAGGTAACGCTCTCTATTTTACAACAACGAAAAACGTTCTTCCAAAACAAGAATTGAAGGTTGGTTATAGTGCAAATTACGCCCATCGTCACAAACTAACAGTTTTGAACCCTCCTGTCGAAAAATCTTGGCCGTGTTTCGAATGTTCTTCAATTTTTTCCACCTCTGAAGAATTGCAAAAACATTTGAACATCCACGACGATGAGAGAGACGAAAACACGAAACCTCGCAAGAAATTTTGGAAAACCAACAAAAGAAAGAGTCCCAAAGGCAACAGTGAAGCTCTCAAATGCAATAATTGCAACGAATTGTTTGTGCAACCCGGAAAACTCGCCTTGCGCAACCACCTTATCGAAAAACATCTAATGAGCAAGTTTTCCTCTATTGACGAGCATTTTTCATTTGTTTTAAATTATTACAAATGCGACGCTTGCGAGGCAGTTTTCAGTTCAGAGGCGCTTCTGAAAGTTCATGGATATCTTCATGATTCGGACAGTTCAGATGAACAAACCCATCATATATGTCCGGCATGTCAAAGAAAATTTCCTACCCAACGTCAGTTGGTTGCTCATATATCCACGCATAATTTAGCCTCGCCCGCAACCACCCAGCAACCCGAAACCTTCAAGTGTACAGTCTGCCACAAAATGTTCGCCTTCCGCGAGCGGCTGCGGCGTCACATGTTGGTTCACGGTTCCGACGAGTCGAAACCGCTCCAATGCAAGACGTGCAGCAAACGTTTCTTGAACAACTCGGCATTGGCCGGCCATTTAAAAACCCATTTTGTCGGCAAGAAAATTTTCGAGTGTCCCATTTGTAAAGAAAGTTTCGATCACGTTCTAAAATTGAAATTGCACGTACCGAAACATTGCGAAAACAATTTGTATTCTTGTCCGCATTGCACGAAAGTTTTCAAAAAATACAGCATCATACGTAAACATATCAGAGCATTCCATTGCGATCAGAAACATTCTTGTCAACATTGTTCAAAATTGTTTCCGACTTTGGACAAATTAAAAATGCATTTGTTACGTCATTCTGATCATAGAGAATTTTTATGTGCAGATTGCGGTAAACAATTCAAACGTAAAGATAAATTAAAAGAACATTGCAAACGTATGCATTCTGAAGAAAGAGAAAACGACGTGCCCCGACCCCAAAAACCGACAGTACAACAACCATCGCGCAAATTAAGTCCGAAAGTAGAACCGACGGATTTCCATCGTTTTATCTATAAATGTCACAGTTGTTTGGTCGGGTTTAAACGAAGAGGGATGTTAGTTAATCATTTAGCGAAACGTCATCCGGATATTCCACCCGATTCGGTTCCTGAATTGAATCTTCCGATTCTTCAAACGACACGTGATTATTACTGTCAACATTGCGATAAAGTTTACAAGAGCAGTTCGAAACGTAAAGCTCATATATTGAAGAATCATCCGGGTGCTGCGTTACCGATGAGTAACAGGAAACAAGGATCGTATCCGGACGGATCGGGATTACCTAATCCGACTTTTTCGCAAACTGTCGGCAGTATCACGACGAGACCTCAAAGTTGCACTTGGTGTCACAAACAGTACGCCAGTAAAGCGAAATTGTTGCAACATCAAAGGAAGAAACACAGCGAACAATTGGCGCAACAAAACGGGGAGAAATGCGGCGGATTAAGCGACCAAAATACGGGACAAGAGGAAAAAGAGTCGACGGGAGAGGAAAATTGCCTAACTGATGACTATAAGGTGACGGAGGCGGACATCTTGAACAGCGCTTTAGAGGAGTACGAGGAGCGCGAGGGTGAGCAGTACTGCCATCTGGTGGCGATAGCGGGCAACGATAATTTCGGTCAAAGCAACGATTCTCATTTGTATCGTCTGCTGACTACTAGCAACGGTATGGTGCCGCCGCGTTGA
Protein Sequence: MDTIVEGPPEDGAQDLNLVDAAEWAVDNPNIVNNNSTFLYIAVEYVKDELKLEQTNLVQQPDAYADFEQHVSPLDPNMSSVARYSPVYSEPSGEYNPIVIHQLVQPNNNCQNELVNNLTSNSPLEVMPVLCNNDIRDVVENQYLQMTDSSTNQSELQMVSEPEPTQVELLITDQETGISYSVRSQEFLVGRCLEDEQLLNALTPDPLLESDLLALDENTLKTELNDDIINSEIVPTVDSAVVSNYISSLTENDLKNVVDNENQYKIETRRNRSSDVEFEDQLLSRVYSIIDKPVPSRARATLPESYLVINKVDETGIGVFAKKSIPKRTQFGPLTGVLTTHSMLEVKDEIGTLLYLIEGEDGVNRLDVSDENISNWMSFVRKATNYGEQNLVISQEGNALYFTTTKNVLPKQELKVGYSANYAHRHKLTVLNPPVEKSWPCFECSSIFSTSEELQKHLNIHDDERDENTKPRKKFWKTNKRKSPKGNSEALKCNNCNELFVQPGKLALRNHLIEKHLMSKFSSIDEHFSFVLNYYKCDACEAVFSSEALLKVHGYLHDSDSSDEQTHHICPACQRKFPTQRQLVAHISTHNLASPATTQQPETFKCTVCHKMFAFRERLRRHMLVHGSDESKPLQCKTCSKRFLNNSALAGHLKTHFVGKKIFECPICKESFDHVLKLKLHVPKHCENNLYSCPHCTKVFKKYSIIRKHIRAFHCDQKHSCQHCSKLFPTLDKLKMHLLRHSDHREFLCADCGKQFKRKDKLKEHCKRMHSEERENDVPRPQKPTVQQPSRKLSPKVEPTDFHRFIYKCHSCLVGFKRRGMLVNHLAKRHPDIPPDSVPELNLPILQTTRDYYCQHCDKVYKSSSKRKAHILKNHPGAALPMSNRKQGSYPDGSGLPNPTFSQTVGSITTRPQSCTWCHKQYASKAKLLQHQRKKHSEQLAQQNGEKCGGLSDQNTGQEEKESTGEENCLTDDYKVTEADILNSALEEYEEREGEQYCHLVAIAGNDNFGQSNDSHLYRLLTTSNGMVPPR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01330057;
90% Identity: iTF_01330057;
80% Identity: -