Basic Information

Insect: Schizotus pectinicornis
Gene Symbol: ZIPIC_1
Assembly: GCA_951805265.1
Location: OX638202.1:15826760-15829792[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 2.8 1.9e+02 2.9 0.2 2 23 7 28 6 28 0.92

2 15 0.067 4.6 8.0 1.1 1 23 527 550 527 550 0.91

3 15 0.038 2.6 8.8 0.0 2 23 630 652 629 652 0.92

4 15 0.0079 0.54 11.0 1.3 1 23 660 682 660 682 0.98

5 15 0.00024 0.016 15.7 1.4 2 23 685 706 684 706 0.97

6 15 0.0023 0.16 12.6 1.0 1 23 712 734 712 734 0.98

7 15 3.9e-05 0.0026 18.2 5.1 2 23 741 762 740 763 0.95

8 15 0.29 20 6.0 1.6 5 23 776 794 775 794 0.96

9 15 0.0001 0.007 16.9 3.4 2 23 800 822 799 822 0.96

10 15 0.023 1.6 9.5 0.0 2 23 838 858 837 858 0.96

11 15 0.00037 0.025 15.2 0.9 1 20 864 883 864 886 0.91

12 15 0.00019 0.013 16.1 0.2 1 23 894 916 894 916 0.99

13 15 0.00087 0.06 14.0 3.7 1 23 922 944 922 944 0.98

14 15 5.3e-07 3.6e-05 24.1 3.8 1 23 950 972 950 972 0.98

15 15 0.0014 0.093 13.4 7.0 1 23 978 1000 978 1001 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	2.8	1.9e+02	2.9	0.2	2	23	7	28	6	28	0.92
2	15	0.067	4.6	8.0	1.1	1	23	527	550	527	550	0.91
3	15	0.038	2.6	8.8	0.0	2	23	630	652	629	652	0.92
4	15	0.0079	0.54	11.0	1.3	1	23	660	682	660	682	0.98
5	15	0.00024	0.016	15.7	1.4	2	23	685	706	684	706	0.97
6	15	0.0023	0.16	12.6	1.0	1	23	712	734	712	734	0.98
7	15	3.9e-05	0.0026	18.2	5.1	2	23	741	762	740	763	0.95
8	15	0.29	20	6.0	1.6	5	23	776	794	775	794	0.96
9	15	0.0001	0.007	16.9	3.4	2	23	800	822	799	822	0.96
10	15	0.023	1.6	9.5	0.0	2	23	838	858	837	858	0.96
11	15	0.00037	0.025	15.2	0.9	1	20	864	883	864	886	0.91
12	15	0.00019	0.013	16.1	0.2	1	23	894	916	894	916	0.99
13	15	0.00087	0.06	14.0	3.7	1	23	922	944	922	944	0.98
14	15	5.3e-07	3.6e-05	24.1	3.8	1	23	950	972	950	972	0.98
15	15	0.0014	0.093	13.4	7.0	1	23	978	1000	978	1001	0.96

Sequence Information

Coding Sequence: ATGGATTCCAGCAACATTGTTTGTCCAGTTTGTACATTGTATCTGAGGCCAGGGATCACCCTCAAGCACCATTTGAGCAGCCACCCCAAACAGAAGGTAATTGAAGCCCTGGTTCGCTTTGCCCAAACTGAAGATGTGCAGAAAATCGGCAACACCTCTTCACAACCCGATTCCTGTTCCGCCGCCAACTCCCAAATTAACACCATTGTCAACCAAACGTGGAATCAAGGTAATTTGGTTAATATGCCCCCCAGCATGCCGCCAATGCAGGGCAACCATCTCTTCATCTACCAGCAGAGCATGAGCAGCACCACAGCCCCGCAACAGAATGTACTCAACATCAACCCATTGTCACCGCAATATGTAATTCCAACAGTTTTAAACCCGCAAATGATGCCCTATGTTTATCAGCAGCAACAAGTTATTATGTCTAGCGGCTCTTGTATGTCACCAATGCGTAATCTTCCATTTGAATTGCCATCATCATCATCCAGTATTGAAGCGACCATTCCAAGTTCTTCAGAGGCTTCAATTCACGAAATTGAGATTGATGACGTACATCAAAGTCAATTAGCGATCACCGACAAAGAAACCGAGGAAGAAGCTGAAGGGGACGTCGATGAATCGTTTACTTCCGAAGATTCGGGTGTTGCAACCAGCAAACAAGAGTTTGAGGAGACGGTGAAAAACGATGCAGAATTGCAAGAAGAACTCAACGGTTCTgtggatttgaaaatttacgacGCGACAGAGGAGTGTCACGATAATGACAGCgaacaaaattacgaaaatcagGAGGATTGTGGTTCTCCGCGATCACCAACCGGCTCCGATTGGAGTTTGAGGGTCCGCTCTGACTTAAATAAGGCCTGCCAAACTCAAAACACCAACAACTTGTCCCCTAGGTCGCTACTGCAAGACGATGAATTACTCGAGGAAGGTGAGCCTACGAAACATGTGGAACCTGGGTTTTACTTTATTGGGGATACCGACAACAACCAAACGTACACTTCGATGGACCTAAATCAGAGCTACGAACAATCAAATCCTATTTATGCCGCGTCCAATATCCTGCAGTCCGGCGACCATTTGGATTTTGTCGACATGGACGGGATGCACATGGTGATGAACGAtttttcgaccaatcagataATTTcgcaagttgaaaattttgagggtAGCGCCCCTGATCGACCGGGCGTTCTTATGACGATCGGGGGCATGGTCGATAATTCCAAAGACGGATTTATCGACCACAGGGAGGAAAGTATGTCGCGGGAAAGCTCCAACGTTAATATTCGCGCGGACGAAAGAATGCCTCCTCGCGGGGAGCTATCGGGCCAGGAAAGTATCGGGGGGGCCAGCGATATCACCTGGAACAGGATGCAGTATAACGAGGGCAGTTCGGGAATGTCGACGTCCTACGATTTGCTAGTCAGGGAAAGTTGGGAGGCTTCTGACAGCTCCGACGTGGAAGTTCCGCCGCTGCAGAGCCGCATCCCGCCTCACGTCGCGTATCCCGAGAACGACGACAACGACACGCCAACCATTGTCAGCTTTACCGGCCCGcctttgaattttaaatgttcCACTTGCGGTGACGCTTTCAAATCGTCAAAAGACAGAAAAGAACACGAATTGGAGAAGCACGCCGCCGAGAAAGTTCCTAAATCCAGCAAAATTGGGGGCGAAATTGGgaagaagaaagtaaaaaaaatagttgttaAGCTCAAATCGACTAAAgctgaaaccgaaaacaattTCGATAACGTGTTCACTAATAAGCTGAAAATGGAAACTGCTCTGGAGACTGAGGGGCAAGTTCCGCTTCCGGAGGAGCTCGATCTTAAAATTGACGAAACCAACGTCGCCGTTGAGCTGAAAACTGTTTGTCCTCTCTGCGACATCGTCCTCGTCAACGCTAAAGCGTTGAGAGAGCACAAGATTAACGTGCACAACATTACCCCCCAAACTCGCCATAAATGCTTGACCTGCGAAGAGGTTTTCCCCAACGACTACAAATTTTCGGAACATTTGAGAATACACCCGTTAGAATGCAAATTGTGCGGCAAACTCTTCTACAAGCGCCAAAACATCCAGCTCCACATGCGGCGCCATCTAGGAATCAAACCCTACAAGTGCGAGGTTTGCGAGAAATCGTTCCTGACCAAACAGAAATTGGACGAACACCGGAACATTCACACGGGCGAAACGCCGATCAAATGCAGTTTGTGCGACGAAACCTTCCGAAGACACTCAAACTTGGTGCAGCACCGCAACCGTCACCACTTGAACGTCAAGAAGAAGGTCAAAGATTATATTTGTTATTGCAAGGAAATTTTCCAttcgaagaaaaaattggcCTGGCACCAGGAGATTCACGATTCGAAGCCAAAGTCGTGCACCCAGTGCAGCGAAAAGTTCATCCACATGTCGAGTTTGACCCGACACATGAGGCGCGCCCACAACGACAGGTTTCTGCCCAACGGCCATAAAAGCGCCGAAAACGTAGAATGCCCAATTTGTAAAGGCGTCTACCTGAAATCGTCCCTCGAAGTCCATATACGTAACCACAGCGGCCAAAGGCCGTTCGCttgtttaatttgtaataaggATTTCACTACCAAGTGGAACTTGAAGTTGCACAAATGGACGCACGCGTCGCGGGTCTCCAAGCCTTTCAAATGCGACCAGTGCAAGGGGGCTTTTATCCGCGAGTCCGACTACGTCGCCCACATGAACTCGCACAAAAGCGTCCGGCCGTATACCTGCAACTACTGTGGGGCGCAGTTTATTAGGAAATATAATTGTCAGAGACATGTGAAGGAGCACGAGAAAGAGAAAACGTACAATTGCAAAGTCTGCGGCAAGTCGTTCCACCGGTCCTACTACTTGAAAGACCACATGCGGATCCATAGCGGGGTCCGGCCGTACTCCTGTCACATTTGCGGCAAAACTTCTACCACTAAATCGAATCATAATAAACACGTGCAAATCCACCACGCCAGAGAGCCGGTGAGCACTGAAAATTGA
Protein Sequence: MDSSNIVCPVCTLYLRPGITLKHHLSSHPKQKVIEALVRFAQTEDVQKIGNTSSQPDSCSAANSQINTIVNQTWNQGNLVNMPPSMPPMQGNHLFIYQQSMSSTTAPQQNVLNINPLSPQYVIPTVLNPQMMPYVYQQQQVIMSSGSCMSPMRNLPFELPSSSSSIEATIPSSSEASIHEIEIDDVHQSQLAITDKETEEEAEGDVDESFTSEDSGVATSKQEFEETVKNDAELQEELNGSVDLKIYDATEECHDNDSEQNYENQEDCGSPRSPTGSDWSLRVRSDLNKACQTQNTNNLSPRSLLQDDELLEEGEPTKHVEPGFYFIGDTDNNQTYTSMDLNQSYEQSNPIYAASNILQSGDHLDFVDMDGMHMVMNDFSTNQIISQVENFEGSAPDRPGVLMTIGGMVDNSKDGFIDHREESMSRESSNVNIRADERMPPRGELSGQESIGGASDITWNRMQYNEGSSGMSTSYDLLVRESWEASDSSDVEVPPLQSRIPPHVAYPENDDNDTPTIVSFTGPPLNFKCSTCGDAFKSSKDRKEHELEKHAAEKVPKSSKIGGEIGKKKVKKIVVKLKSTKAETENNFDNVFTNKLKMETALETEGQVPLPEELDLKIDETNVAVELKTVCPLCDIVLVNAKALREHKINVHNITPQTRHKCLTCEEVFPNDYKFSEHLRIHPLECKLCGKLFYKRQNIQLHMRRHLGIKPYKCEVCEKSFLTKQKLDEHRNIHTGETPIKCSLCDETFRRHSNLVQHRNRHHLNVKKKVKDYICYCKEIFHSKKKLAWHQEIHDSKPKSCTQCSEKFIHMSSLTRHMRRAHNDRFLPNGHKSAENVECPICKGVYLKSSLEVHIRNHSGQRPFACLICNKDFTTKWNLKLHKWTHASRVSKPFKCDQCKGAFIRESDYVAHMNSHKSVRPYTCNYCGAQFIRKYNCQRHVKEHEKEKTYNCKVCGKSFHRSYYLKDHMRIHSGVRPYSCHICGKTSTTKSNHNKHVQIHHAREPVSTEN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01283661;
90% Identity: iTF_01283661;
80% Identity: -