Basic Information

Insect: Pyrochroa serraticornis
Gene Symbol: ZIPIC
Assembly: GCA_905333025.1
Location: HG995152.1:35035378-35038413[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 3.1 2.2e+02 2.9 0.2 2 23 7 28 6 28 0.92

2 15 0.081 5.6 7.9 0.8 1 23 529 552 529 552 0.93

3 15 0.052 3.6 8.5 0.0 2 23 631 653 630 653 0.92

4 15 0.0088 0.61 11.0 1.3 1 23 661 683 661 683 0.98

5 15 0.00027 0.019 15.7 1.4 2 23 686 707 685 707 0.97

6 15 0.0026 0.18 12.6 1.0 1 23 713 735 713 735 0.98

7 15 3e-05 0.0021 18.7 5.2 2 23 742 763 741 764 0.95

8 15 0.17 12 6.9 1.3 5 23 777 795 776 795 0.96

9 15 0.00011 0.0079 16.9 3.4 2 23 801 823 800 823 0.96

10 15 0.026 1.8 9.5 0.0 2 23 839 859 838 859 0.96

11 15 0.00041 0.028 15.2 0.9 1 20 865 884 865 887 0.91

12 15 0.00012 0.0085 16.8 0.2 1 23 895 917 895 917 0.99

13 15 0.00097 0.068 14.0 3.7 1 23 923 945 923 945 0.98

14 15 5.9e-07 4.1e-05 24.1 3.8 1 23 951 973 951 973 0.98

15 15 0.0015 0.11 13.4 7.0 1 23 979 1001 979 1002 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	3.1	2.2e+02	2.9	0.2	2	23	7	28	6	28	0.92
2	15	0.081	5.6	7.9	0.8	1	23	529	552	529	552	0.93
3	15	0.052	3.6	8.5	0.0	2	23	631	653	630	653	0.92
4	15	0.0088	0.61	11.0	1.3	1	23	661	683	661	683	0.98
5	15	0.00027	0.019	15.7	1.4	2	23	686	707	685	707	0.97
6	15	0.0026	0.18	12.6	1.0	1	23	713	735	713	735	0.98
7	15	3e-05	0.0021	18.7	5.2	2	23	742	763	741	764	0.95
8	15	0.17	12	6.9	1.3	5	23	777	795	776	795	0.96
9	15	0.00011	0.0079	16.9	3.4	2	23	801	823	800	823	0.96
10	15	0.026	1.8	9.5	0.0	2	23	839	859	838	859	0.96
11	15	0.00041	0.028	15.2	0.9	1	20	865	884	865	887	0.91
12	15	0.00012	0.0085	16.8	0.2	1	23	895	917	895	917	0.99
13	15	0.00097	0.068	14.0	3.7	1	23	923	945	923	945	0.98
14	15	5.9e-07	4.1e-05	24.1	3.8	1	23	951	973	951	973	0.98
15	15	0.0015	0.11	13.4	7.0	1	23	979	1001	979	1002	0.96

Sequence Information

Coding Sequence: ATGGATTCCAGCAACATTGTTTGTCCAGTTTGTACATTGTATCTGAGGCCAGGGATCACCCTCAAACACCATTTGAGCAGCCATCCGAAACAGAAGGTGATTGAGGCTCTAGTTCGCTTAGCACAAACTGAAGATGTGCAGAAAGTCGGCAACTCTTCTTCCCAACCTGATTCCTGTTCAGCTGCCAACTCCCAAATTAACACTATCGTCAACCAAACATGGAATCAAGGTAATTTGGTTAATATGCCCCCGAGCATGCCGCCGATGCAGGGCAATCATCTCTTCATCTACCAACAAAGCATGAGCAGCACTACAGCTCCACAACAGAACGTTCTTAATGTCAATCCATTATCGCCGCAATATGTAATTCCAACGGTTCTAAACCCACAAATGATGCCCTATGTGTATCAACAACAACAAGTCATTATGTCAAGTGGTTCATGTATGTCACCAATGCGTAATCTTCCATTCGAATTGCCATCATCATCATCTTCATCCAATGTTGAAGCTACCATTCCAAGTCCTTCAGACGGTTCTATTCACGAAATGGACAATGATCAAGTATCACAAAATCAGCTGGCCATTGCCGAGAAAGAAATTGAGGAAGACGCCGAAGGGGATGTCAATGAGTCTTTCAGTTCAGAAGATTTGGACGTTACAACAGGCAAACAAGAATTTGAGGAATCGATAAAAAACGATGCTGAATTGAATGAAGATCTCAACAGTTCTGTGGATTTAAAAATGTACGAAGCAGCAGGAGAGTGTCCGGATAATGACAGTGAACAGAATTATGGAAATCATGAAGATTGTGGGTCACCTCGATCTCCAACTGGGTCCGATTGGAGTTTGAGAGTTAGATCTGACTTGAATAAAGCATGTCAAACTCAGAACTCCAACAATTTATCCCCTAGATCGCTATTGCAGGATGATGAATTACTTGAGGAAGGTGAGCCTACAAAACATGAGCAATCTGAATTTTACTTTATTGGCGATTCCGATAATAACCAAACTTATACTTCGATGGACCTAAATCAAACCTTCGAACAATCAAATCCTATTTATGCCGCATCTAATATTTTGCAGTCCAACGATCACTTGGATTTTGTCGATATGGATGGCATGCATATGGTGATGAATGATTTCTCAACAAATCAAATAATTTCACAAGTGGAAAATTTTGAGGGTAGCGCCCCTGATCGGCCGGGTGTTCTAATGACGATTGGGGGCATGGTCGACAATTCGAAAGACGGATTTATTGATCACAGAGAAGAAAGTATGTCAAGGGAGAGTTCCAACGTTAATATTCGCGCCGATGAAAGAATGCCCCCACGTGGGGAGTTATCGGGACAGGAAAGTATCGGAGGGGCTAGCGATATTACCTGGAATAGAATGCAGTATAATGAAGGTAGTTCGGGAATGTCGACGTCCTATGATTTGTTGGTTAGGGAAAGTTGGGAGGCTTCTGACAGTTCTGATGTAGAAATTCCCCCGTTGCAAAGCCGGATCCCTCCTCACGTTACGTACCCGGAAAACGACGACAACGACACTCCGACAATTGTTAGTTTTACTGGACCACCTTTAAATTTTAAATGTTCGACTTGCGGTGACGCTTTCAAATCTTCAATCGATAGAAAACAACATGAGATGGAAAAGCATCCGGAAAAAGTTCCGAAATCAAACAAAATTGGGAGCGAAATTGGTAAAAAGAAAGTTAAAAAAATTGTTGTTAAACTTAAGTCTACTAAAGCTGAAACCGAAAATAATTTCGATAACGTGTTTACTAATAAGTTGAAAATGGAAACTACCCTAGAGACTGACGGGAAAGTTTTGATTCCAGAAGAACTCGATCTTAAAATCGATGACGCTAACGTTGCCGTTGAGCTCAAAACTGTTTGTCCTCTCTGCGATATTGTCCTGATAAATGCCAAGGCTTTGAGGGAACACAAAATAAACGTGCACAATATCACTCCACAAACTCGCCATAAATGTTTGACTTGCGAAGAAGTTTTTCCCAACGACTACAAATTTTCGGAACATCTAAGAATACATCCATTAGAATGCAAATTATGCGGCAAACTCTTCTACAAACGCCAAAATATTCAACTTCACATGCGTCGCCATTTAGGGATCAAACCTTACAAATGTGAAGTTTGCGAGAAATCGTTTCTTACTAAACAGAAATTGGACGAACACAGAAACATTCACACAGGAGAAACACCGATTAAATGTAATTTATGCGACGAAACTTTCCGAAGACATTCAAATTTGGTTCAACACCGCAACCGTCACCACTTAAACGTCAAAAAGAAGGTGAAAGATTATATTTGTTACTGCAACGAAATTTTCCATTCGAAAAAAAAGTTAGCCTGGCACCAAGAGATCCATGATTCAAAACCAAAATCATGCACTCAATGCAGCGAGAAATTTATTCACATGTCGAGTTTGACTCGGCACATGAGACGCGCCCACAATGACAGGTTTTTACCCAACGGCCACAAAAGCGCCGAAAACGTGGAATGTCCAATATGTAAAGGTGTTTATTTGAAATCATCCCTCGAAGTCCATATACGTAACCATAGCGGTCAAAGGCCTTTCGCTTGTTTAATTTGTAATAAAGATTTCACTACCAAGTGGAATTTAAAGTTGCACAAGTGGACGCACGCGTCTCGTGTTTCCAAACCTTTCAAATGCGACCAATGCAAAGGCGCTTTTATACGTGAATCGGACTACATCGCTCATATGAATTCGCACAAGAGTGTCAGGCCGTATACTTGCAACTATTGTGGAGCGCAATTTATTAGGAAATACAATTGTCAGAGACATGTTAAGGAGCATGAGAAAGAAAAAACGTACAATTGCAAAGTTTGTGGCAAATCTTTCCATCGGTCCTACTATTTGAAAGATCACATGCGGATTCATAGTGGGGTCCGACCGTACTCATGTCATATTTGCGGCAAAACTTCTACCACTAAATCGAACCATAATAAACATGTGCAAATTCACCATGCCAGGGAGCCGGTGAGCACGGAAAATTGA
Protein Sequence: MDSSNIVCPVCTLYLRPGITLKHHLSSHPKQKVIEALVRLAQTEDVQKVGNSSSQPDSCSAANSQINTIVNQTWNQGNLVNMPPSMPPMQGNHLFIYQQSMSSTTAPQQNVLNVNPLSPQYVIPTVLNPQMMPYVYQQQQVIMSSGSCMSPMRNLPFELPSSSSSSNVEATIPSPSDGSIHEMDNDQVSQNQLAIAEKEIEEDAEGDVNESFSSEDLDVTTGKQEFEESIKNDAELNEDLNSSVDLKMYEAAGECPDNDSEQNYGNHEDCGSPRSPTGSDWSLRVRSDLNKACQTQNSNNLSPRSLLQDDELLEEGEPTKHEQSEFYFIGDSDNNQTYTSMDLNQTFEQSNPIYAASNILQSNDHLDFVDMDGMHMVMNDFSTNQIISQVENFEGSAPDRPGVLMTIGGMVDNSKDGFIDHREESMSRESSNVNIRADERMPPRGELSGQESIGGASDITWNRMQYNEGSSGMSTSYDLLVRESWEASDSSDVEIPPLQSRIPPHVTYPENDDNDTPTIVSFTGPPLNFKCSTCGDAFKSSIDRKQHEMEKHPEKVPKSNKIGSEIGKKKVKKIVVKLKSTKAETENNFDNVFTNKLKMETTLETDGKVLIPEELDLKIDDANVAVELKTVCPLCDIVLINAKALREHKINVHNITPQTRHKCLTCEEVFPNDYKFSEHLRIHPLECKLCGKLFYKRQNIQLHMRRHLGIKPYKCEVCEKSFLTKQKLDEHRNIHTGETPIKCNLCDETFRRHSNLVQHRNRHHLNVKKKVKDYICYCNEIFHSKKKLAWHQEIHDSKPKSCTQCSEKFIHMSSLTRHMRRAHNDRFLPNGHKSAENVECPICKGVYLKSSLEVHIRNHSGQRPFACLICNKDFTTKWNLKLHKWTHASRVSKPFKCDQCKGAFIRESDYIAHMNSHKSVRPYTCNYCGAQFIRKYNCQRHVKEHEKEKTYNCKVCGKSFHRSYYLKDHMRIHSGVRPYSCHICGKTSTTKSNHNKHVQIHHAREPVSTEN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01330043;
90% Identity: iTF_01330043;
80% Identity: -