Basic Information

Insect: Schizotus pectinicornis
Gene Symbol: -
Assembly: GCA_951805265.1
Location: OX638207.1:7307269-7312363[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 0.00012 0.0083 16.7 0.6 2 23 169 191 169 191 0.97

2 20 1.4 92 3.9 6.0 1 23 361 384 361 384 0.92

3 20 0.48 33 5.3 0.1 5 19 394 408 393 411 0.91

4 20 0.081 5.5 7.8 0.2 1 20 417 436 417 440 0.90

5 20 2.9e-05 0.002 18.6 1.5 2 23 522 543 521 544 0.95

6 20 0.13 9.1 7.1 0.9 1 23 561 582 561 582 0.77

7 20 0.00017 0.012 16.2 0.4 3 23 587 607 586 607 0.98

8 20 6.8e-05 0.0047 17.5 0.4 2 23 637 658 636 658 0.96

9 20 0.0087 0.59 10.8 0.9 1 23 676 699 676 699 0.97

10 20 0.0054 0.37 11.5 1.9 2 23 713 734 712 734 0.97

11 20 0.0035 0.24 12.1 7.4 1 21 768 788 768 790 0.95

12 20 0.07 4.8 8.0 2.3 3 23 811 832 811 832 0.93

13 20 0.00011 0.0075 16.8 1.2 1 23 854 876 854 876 0.98

14 20 1e-05 0.00068 20.1 0.6 2 23 892 914 891 914 0.95

15 20 0.00096 0.066 13.8 0.0 1 23 930 952 930 952 0.94

16 20 0.89 61 4.5 0.1 1 23 980 1003 980 1003 0.94

17 20 0.0012 0.079 13.6 1.6 2 23 1014 1035 1014 1035 0.97

18 20 0.00033 0.023 15.3 0.2 1 23 1045 1068 1045 1068 0.96

19 20 9.6e-05 0.0065 17.0 0.6 1 23 1076 1098 1076 1098 0.98

20 20 0.0037 0.25 12.0 0.1 1 23 1112 1135 1112 1135 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	0.00012	0.0083	16.7	0.6	2	23	169	191	169	191	0.97
2	20	1.4	92	3.9	6.0	1	23	361	384	361	384	0.92
3	20	0.48	33	5.3	0.1	5	19	394	408	393	411	0.91
4	20	0.081	5.5	7.8	0.2	1	20	417	436	417	440	0.90
5	20	2.9e-05	0.002	18.6	1.5	2	23	522	543	521	544	0.95
6	20	0.13	9.1	7.1	0.9	1	23	561	582	561	582	0.77
7	20	0.00017	0.012	16.2	0.4	3	23	587	607	586	607	0.98
8	20	6.8e-05	0.0047	17.5	0.4	2	23	637	658	636	658	0.96
9	20	0.0087	0.59	10.8	0.9	1	23	676	699	676	699	0.97
10	20	0.0054	0.37	11.5	1.9	2	23	713	734	712	734	0.97
11	20	0.0035	0.24	12.1	7.4	1	21	768	788	768	790	0.95
12	20	0.07	4.8	8.0	2.3	3	23	811	832	811	832	0.93
13	20	0.00011	0.0075	16.8	1.2	1	23	854	876	854	876	0.98
14	20	1e-05	0.00068	20.1	0.6	2	23	892	914	891	914	0.95
15	20	0.00096	0.066	13.8	0.0	1	23	930	952	930	952	0.94
16	20	0.89	61	4.5	0.1	1	23	980	1003	980	1003	0.94
17	20	0.0012	0.079	13.6	1.6	2	23	1014	1035	1014	1035	0.97
18	20	0.00033	0.023	15.3	0.2	1	23	1045	1068	1045	1068	0.96
19	20	9.6e-05	0.0065	17.0	0.6	1	23	1076	1098	1076	1098	0.98
20	20	0.0037	0.25	12.0	0.1	1	23	1112	1135	1112	1135	0.94

Sequence Information

Coding Sequence: ATGGCCGATTCGAGACTCGCCAATTTCAGCTCGTGCTGTAGACTTTGCCTGGCCGAGAAACCAGATTCCATCAGGTCGATTTTCGACGAAGCTATAGACGACCGTGCTTTGGCACAGAAGATTTCGGCCTCCGTATCGGTTGAGATAACCCCCGACGATAAGCTATCAACAATGGTTTGCGCCCCTTGCcttgaaaaaatcaacaattgcTACTCCTTCAAGCAAACCTGCACCGACAACCAAACCAAGCTCGAACAATGGTTGCAGTTGAGCAATGCTGACTCAGAATTGGGCAACATACAAATTAAGGAGGAACCCATTGACCAGGAGCAGGAACCCTTGCCTTTGGAGGTGGTACTGAATGGAGGTGTGCCAATTAAAGCTGAGCCTTTGGAGGTTGAGTACAATGAATTGCCTCCACCTTTAACGCCGCAAGGTGATGACGTCGAGATGGTGGAACATTCTCCAGCTTCTCAAATTGACGAGGACGGGTATAATCCGCGAAAATGCCCCGTTTGTGACAAGTTGTTTAGTTCGTCGGGCAACCGGAAGAAGCACGAAAGGATTATTCACGGCATCAACCCCATGGGCACTACTTCCGAATCTGAGATGGGTTCTCTGAGTCAGGATGACAGGTCTCAAAGTTCCATGGACTCTCAGCCGGCCCCGGAAATCATTCTTGACTCTCGAGAGCCAAACAGCGAAGAGGAGAAGATCTTGTTTGCAGCCGGTTTAAAGTTACTTCAATGCAACTCAACACCACCAATCTCACTAGAATCTCTATCGAAGATTGAGCATAGTTACATAGAGAAATGCAAAGCGATGTGTTCCATGTATACGTCGTTGGTTTGCGCATGTCACAATGTCCAACATCCAAATCTGAAAGGTTTATTGTCGCATTTGCGATCGTTGCGCATTTGGTTCCCGGTTTTCACATGTTACCATTGCATGGTGACTTTAACAGACAGGTCGACCAGCACCCGTCATCATTTGCGGTGTAGCAAAACCGGGCTGGAAACGTTGGTAAAATTATCGAATCTGAAAAAGCGCAGTGAGGTCAAAACGCggctttatcaaaattataagTGTACTAAATGTCGGTTTATGTACAGTTTTCACGAGGATTTCTGCACTCACGTCGATGAGGAACATTCGCAAATTGATATGCCGACTAGGTGTACTTGCGGTAGAGTTTTCTCGACTATCGAAGATTACAAAGATCACGCCTATGTTAGTTGTTTGGTTCAGTTTTATTGtgatatttgttttgttactGTTAAAACCTTAGATGCTTTCCAAAAACACGCCGTTGAAGTGCATGACCAATCTGAAGGGTTTGTACTTCTTCAAGATGATAATTATAAACAAAGGCGAGCGATGTCTTTACCGAGCACCACTGCAACTACTACTCCCACTCTGACCACAGCTGTTAAAAGGGAACACTCagaagaaaatattgttaCGGGAAAGCGCCGAAGTACGTTCTACAAATTGAGAGTCACTGAGGTTGAAGATAATGTTGAAGCTAAACCACCGAGTGGGGGGGAGAAAGTTCAAGGTACGGTTTGTCCAATTTGTTCAAAGGAATattcaaacaataataacatgtGGCGCCACTATCAGACTCATCATCGCAAAGAGGAAGGTAACGGCAACGAGGGCGATTATGACGACTCGTTGTATTGTTGTCCGGATTGCGGGGGGATGTTTAGTACCGCGGAATGGGAGAAGCATAAGGAGCaacataagaaaaaattgtgtaacgAGTGCGGAAAGGTCTTCCAGTTCCAGTCGGAACTAGACCAGCACAGGAGCGTTCATTTGAATCTCAAAGTTTTCAGGGATTCCAAAACCCAAGCGTACAGAAGTACAATGGCGAGTCCCAATAACGAAACTAACATTGTTGTGATGTGCGAAATTTGCGACACTATGTACACCTCGAAAGAACAGTTGAGGGAGCACAAATTAACGCACGAAACTATGCCGACTTTGGAGTCTGAAACTCTTGATGTCAAACCGAAAAAGTTTTCGTGTCAAATATGCGACAAGCATTACGCGGGTTACGGCGGCTTATGGGATCATAACAGGAAGAAGCATCCCGAGAACAAGtcgccattttccaaagattttcccaaaaaatgcaaatattgcGAAAAGGTGTTTTACACGGGCGGCTCGTATTTCATGCACAAACAGATGCATGAAAGAACGCACCAGaatctctcgagttcccaaagAAAAGTCATCGAAGACCAAGCGGCGCtccaagaagaagaaactaaTGAAGACGCAGAATCGTATCATACTTGCAAGCGATGCTTTAAAGTTTTTGCGAACAGGTACAGTCTCAAAAATCACATGAAATGTCACGGGATCATGAGCCCCACTACAAAAACTTCGTTGAAAAATAAAGGATCGAAGAAAGTTTGGTGCGACATTTGCCATTCAGCTTTCGACAGCCACTCAAGTTTGGAACAACACAAATCCGAAGAACATAACGAAGATGACGGAATGCCGAATTTGTCGGATGAAGAAATCGACGTTAAAACACCTTTCGTTTTCACTTGTGATGTTTGCGTGCAAACTTTCACATCGAAAGTGGCGTTAAAGAAACACAAGGAGAAACACGCTCAAGAGCGCGTCGTGCCTCCACCCAACAAACGTACCTTAGTTTATtgcaaatattgcaaaatttcgttCGAAAACCCCGAACAACTCAACAAGCACATGCAAGAAAAACATACGGAATCCAAGCTGAGGCCTAAGCCGAAAGAAAAAGTCAAGCAGTACGCTTGCAATATTTGTCGCAAAGCTTTCAGTTCCGCGGCTGCCATGTACGCGCATCAAGGCTGGCACAAACGGGGCAAAGTCTACGATAATCCCGTCACTGAACCTCTGGTTACCATCAAACAAGAACCTAACGCCgaagtagaaattttcaaatgcgtTACTTGTAAGGCGATACTACCTAACGATACAGCGTTACAAATccatattttggaaaaacacAGAAATGTTAACACTTTTATTCTACCGGCGCGTTGCAACACTTGCAATTTAGATTTTACATCACAAGATGAATATGAGCAACACAAGCGCTACCACAACATGGTCGAGATTACTCGAAAAACGTTTCCTTGTGTCCACTGTCCTGCCGCTTTTAGCAGGATCGACACTCTTAACGCGCACGTGCGCCAATTCCATAAAGACCAAGTTAAACACGAGTTTAAATGTGCGCAATGTGAACGCATTTTTGATAAGCAGTCCTCGTTGAGTATCCATTTGAAGGTGCATGAGAAGCAACGATTGAGTACAGTTTCGAAACCGCCGCTTTTCTCTTGCTCTATTTGTAATTTAGGATTTGATCTGCCGAAAGATTTGAGGGCGCATACCATACAAGCTCATCCGTTCTGA
Protein Sequence: MADSRLANFSSCCRLCLAEKPDSIRSIFDEAIDDRALAQKISASVSVEITPDDKLSTMVCAPCLEKINNCYSFKQTCTDNQTKLEQWLQLSNADSELGNIQIKEEPIDQEQEPLPLEVVLNGGVPIKAEPLEVEYNELPPPLTPQGDDVEMVEHSPASQIDEDGYNPRKCPVCDKLFSSSGNRKKHERIIHGINPMGTTSESEMGSLSQDDRSQSSMDSQPAPEIILDSREPNSEEEKILFAAGLKLLQCNSTPPISLESLSKIEHSYIEKCKAMCSMYTSLVCACHNVQHPNLKGLLSHLRSLRIWFPVFTCYHCMVTLTDRSTSTRHHLRCSKTGLETLVKLSNLKKRSEVKTRLYQNYKCTKCRFMYSFHEDFCTHVDEEHSQIDMPTRCTCGRVFSTIEDYKDHAYVSCLVQFYCDICFVTVKTLDAFQKHAVEVHDQSEGFVLLQDDNYKQRRAMSLPSTTATTTPTLTTAVKREHSEENIVTGKRRSTFYKLRVTEVEDNVEAKPPSGGEKVQGTVCPICSKEYSNNNNMWRHYQTHHRKEEGNGNEGDYDDSLYCCPDCGGMFSTAEWEKHKEQHKKKLCNECGKVFQFQSELDQHRSVHLNLKVFRDSKTQAYRSTMASPNNETNIVVMCEICDTMYTSKEQLREHKLTHETMPTLESETLDVKPKKFSCQICDKHYAGYGGLWDHNRKKHPENKSPFSKDFPKKCKYCEKVFYTGGSYFMHKQMHERTHQNLSSSQRKVIEDQAALQEEETNEDAESYHTCKRCFKVFANRYSLKNHMKCHGIMSPTTKTSLKNKGSKKVWCDICHSAFDSHSSLEQHKSEEHNEDDGMPNLSDEEIDVKTPFVFTCDVCVQTFTSKVALKKHKEKHAQERVVPPPNKRTLVYCKYCKISFENPEQLNKHMQEKHTESKLRPKPKEKVKQYACNICRKAFSSAAAMYAHQGWHKRGKVYDNPVTEPLVTIKQEPNAEVEIFKCVTCKAILPNDTALQIHILEKHRNVNTFILPARCNTCNLDFTSQDEYEQHKRYHNMVEITRKTFPCVHCPAAFSRIDTLNAHVRQFHKDQVKHEFKCAQCERIFDKQSSLSIHLKVHEKQRLSTVSKPPLFSCSICNLGFDLPKDLRAHTIQAHPF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01283624;
90% Identity: iTF_01283624;
80% Identity: -