Basic Information

Insect: Pyrochroa serraticornis
Gene Symbol: -
Assembly: GCA_905333025.1
Location: HG995156.1:11900760-11905299[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 7.4e-05 0.0052 17.5 0.6 2 23 169 191 169 191 0.97

2 20 1.5 1e+02 3.9 6.0 1 23 361 384 361 384 0.92

3 20 0.83 58 4.7 0.0 6 19 395 408 393 411 0.92

4 20 0.089 6.2 7.8 0.2 1 20 417 436 417 440 0.90

5 20 4.1e-05 0.0028 18.3 0.5 2 23 516 537 515 537 0.97

6 20 0.24 17 6.5 1.0 1 16 555 569 555 576 0.74

7 20 0.00011 0.0078 16.9 0.7 2 23 580 601 579 601 0.96

8 20 1.3e-05 0.00089 19.9 0.5 2 23 631 652 630 652 0.97

9 20 0.0064 0.45 11.4 1.0 1 23 670 693 670 693 0.97

10 20 0.027 1.9 9.4 2.7 2 23 707 728 706 728 0.97

11 20 0.0014 0.096 13.5 7.4 1 21 762 782 762 784 0.95

12 20 0.077 5.4 8.0 2.3 3 23 805 826 805 826 0.93

13 20 9.1e-05 0.0063 17.2 1.3 1 23 848 870 848 870 0.98

14 20 2.5e-05 0.0017 19.0 0.2 2 23 886 908 885 908 0.93

15 20 0.0011 0.074 13.9 0.0 1 23 924 946 924 946 0.94

16 20 0.23 16 6.5 0.1 1 23 974 997 974 997 0.95

17 20 0.0013 0.089 13.6 1.6 2 23 1008 1029 1008 1029 0.97

18 20 0.0049 0.34 11.8 0.1 1 23 1039 1062 1039 1062 0.96

19 20 3.7e-05 0.0026 18.5 0.6 1 23 1070 1092 1070 1092 0.98

20 20 0.0041 0.28 12.0 0.1 1 23 1106 1129 1106 1129 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	7.4e-05	0.0052	17.5	0.6	2	23	169	191	169	191	0.97
2	20	1.5	1e+02	3.9	6.0	1	23	361	384	361	384	0.92
3	20	0.83	58	4.7	0.0	6	19	395	408	393	411	0.92
4	20	0.089	6.2	7.8	0.2	1	20	417	436	417	440	0.90
5	20	4.1e-05	0.0028	18.3	0.5	2	23	516	537	515	537	0.97
6	20	0.24	17	6.5	1.0	1	16	555	569	555	576	0.74
7	20	0.00011	0.0078	16.9	0.7	2	23	580	601	579	601	0.96
8	20	1.3e-05	0.00089	19.9	0.5	2	23	631	652	630	652	0.97
9	20	0.0064	0.45	11.4	1.0	1	23	670	693	670	693	0.97
10	20	0.027	1.9	9.4	2.7	2	23	707	728	706	728	0.97
11	20	0.0014	0.096	13.5	7.4	1	21	762	782	762	784	0.95
12	20	0.077	5.4	8.0	2.3	3	23	805	826	805	826	0.93
13	20	9.1e-05	0.0063	17.2	1.3	1	23	848	870	848	870	0.98
14	20	2.5e-05	0.0017	19.0	0.2	2	23	886	908	885	908	0.93
15	20	0.0011	0.074	13.9	0.0	1	23	924	946	924	946	0.94
16	20	0.23	16	6.5	0.1	1	23	974	997	974	997	0.95
17	20	0.0013	0.089	13.6	1.6	2	23	1008	1029	1008	1029	0.97
18	20	0.0049	0.34	11.8	0.1	1	23	1039	1062	1039	1062	0.96
19	20	3.7e-05	0.0026	18.5	0.6	1	23	1070	1092	1070	1092	0.98
20	20	0.0041	0.28	12.0	0.1	1	23	1106	1129	1106	1129	0.94

Sequence Information

Coding Sequence: ATGGCCGATTCGAGACTCGCCAATTTCAGCTCGTGCTGTAGACTTTGCCTGGCCGAGAAACCAGACTCCATCAGGTCGATTTTCGACGAAGCTATAGACGACCGTGCTTTGGCACAGAAGATTTTAGCTTCCGTATCGGTTGAGATAACACCCGATGATAAGCTATCAACAATGGTCTGCGCCCCTTGTATTGAAAAAATCAACAATTGCTACTCTTTCAAGCAAACTTGCTCCGACAACCAAAACAAGCTCGAACAATGGTTGCAATTGAGCAATTCCGATATAGAATTGGGCAACATACAAATTAAGGAAGAACCCATCGATCAAGATCAAGAACCCTTGCCTTTGGAGGTAGTACTAAATGGTGGTGTGCCGATTAAAGCCGAACCTTTAGAGGTGGAATACAATGAATTGCCTCCACCTTTAACACCACAAGGTGATGAAGTAGAGGTGGTAGGACACTCGCCTATTTCTCACAATGACGAAGATGGGTATAATCCGCGAAAATGTCCTATTTGTGATAAGTTGTTTAGTTCTTCGGGCAACCGAAAAAAGCATGAGAGGATAATTCATGGGATGAACCCTGTGGGCAGTACTTCCGAATCTGATATGGGTTCTCTCAGTCAAGACGACAGGTCTCAAAGTTCCATGGAATCTCAACCCCCCACCGAAGTCGCCCTCGACTCTCGAGAGCCAAACAGTGAAGAGGAAAAGATCTTATTTGCTGCTGGTTTAAAGTTACTTCAACGCAACTCAACACCCCCAATCTCATTAGAAAGTCTATCAAAGATTGAGCACAGTTACATAGAAAAATGCAAAGCAATGTGTTCTATGTACACGTCGTTAATCTGCGCATGTCACAACGTCCAACATCCGAATCTGAAAGGTCTATTGTCGCATTTGCGTTCCTTACGCATTTGGTTTCCGGTTTTTACTTGCTACCATTGCATGGTAACTTTAACTGACAGGTCCACGAGTACTCGACATCATTTGAGGTGCAGCAAAACTGGATTAGAAACGCTTGTAAAACTATCAAATTTGAAAAAGCGAAGCGAAGTCAAAACGCGACTTTATCAAAATTATAAGTGTACTAAATGTAGATTTATGTACAGTTTTCATGAGGATTTCTGCACTCATGTCGATGAGGAACATTCCCAAATTGACATGCCAACTAGATGTAGTTGTGGTAGGGTATTTTCAACTATCGAAGATTACAAAGATCATGCATACGTCAGTTGTTTGGTTCAGTTCTATTGTGATATTTGTTTTGTTACTGTAAAAACTCTAGATGCTTTCCAAAAACACGCAGTTGAAGTGCATGATCAATCTGAAGGGTTTGTTCTTCTTCAGGACGATAATTATAAACAGAGACGGGCCATGTCTTTACCTGGAACCACTCCTGCTGTGACTACAGCTATTAAGCGGGAACACGGGGAAGAAAATATTATTACTGGAAAACGTCGCAGTACGTTTTACAAATTGAGGGTCACTGATGTTGAAGATAATGTCGAAGGGAAGGCGGTTGGAGAGAAGATTGCAGGCACTGTGTGCCCTGTTTGTTCAAAAGAATATTCAAATAATAATAATATGTGGCGACATTATCAAACTCATACTAGAAAAGAAGAAGGTAACAGTAACGAGGCTGATTATGACGATTCCCTGTATTGTTGTCCTGACTGCGGCGGGATGTTTAGTACTGCGGAATGGGAGAAACATAAGGGGCAACATAAGAAAAAATCTTGTAATGAATGCGGAAAGGTCTTCCAGTTCCAATCGGAACTGGACCAACACAGGAGCGTGCATTTGAATCTTAAAGTTTTTCGTGATTCGAAAACTCAATCATACAGAAGTACAATGGCGAGTCCTAGCGGCGAAACTAATATCGTTGTAATGTGTGAAATTTGTGATACTATGTTCACTACGAAAGAACAATTGAGGGAACACAAGTTAACGCATGAAACCATGCCGACTTTGGAGTCGGAACCGCCTGATATCAAACCGAAAAAGTTTACGTGTCAAATATGTGACAAACATTATGCGGGTTACGGCGGTTTATGGGATCATAATAGGAAGAAACATCCCGAAAATAAGTCGCCATTTTCCAAAGATTTTCCCAAGAAGTGCAAATATTGCGAAAAATTTTTTTACACAGGCGGCTCGTACTTTATGCATAAACAGATGCATGAAAGAACGAACCAGAACCTCTCGAGTTCTCAAAGAAAAGCTATCGAAGACCAAGCTACTTTGCAAGAAGAAGAAACTAACGAAGACGCAGAGTCGTATCATACTTGCAAAAGGTGCTTCAAAGTGTTTGCGAACCGATATAATCTCAAAAATCACATGAAATGTCACGGGATTATGAGTCCCACTACAAAAACTTCTTTAAAAAACAAAGGATCTAAAAAAGTTTGGTGCGATATTTGCCATTCGGCTTTTGACAGCCACTCCAGTTTGGAACAACATAAATCAGAAGAACACGTCGAAGATGACGGAATGCCGAATTTATCTGATGAAGAACTCGACGTTAAAACACCTTTCGTTTTCACTTGTGATGTTTGCGTGCAAACTTTTACAACAAAAGTTGCTTTAAAGAAACACAAGGAGAAGCATGCTCAAGAACGTGTTACATCCATATCCAACAAACGTACCTTAGTTTATTGCAAATATTGCAAAATTTCGTTTGAAAATCCCGACCAACTCAACCAACACATGGAGGAAGAACATACGGAATCTAAACATAAATCGAAACCAAGAGAAAAAGTGAAGCAGTATGCTTGCAATATTTGTCGCAAAGCTTTCAGTTCAGCTGCTGCCATGTACGCGCATCAAGGTTGGCATAAACGTGGTAAAATTTTTAATAATCCAGTCACCGAACCTTTGGTTACCATCAAACAAGAACCTGACGCGGAAGTAGAAATTTTCAAATGTACTACTTGTAAAGCGATACTACCTAATGATACTGCGTTACAAATCCATATTTTAGAAAAACACAGAAATGTTAATACGTTTATTCTACCAGCACGTTGCAATACTTGCAATTTAGATTTTACGTCACAAGATGAATACGAGCAACACAAACGCTACCATAATATGGTTGAAATCACTCGAAAAACGTTCCCTTGTGTTCATTGTCCTGCTGCTTTTGGTAGGATCGAAACGCTAAACGCGCACGTGCGCCAATTCCATAAAGACCATGTTAAACATGAATTTAAGTGTGCGCAATGTGAACGAGTTTTCGATAAGCAGTCTTCGTTGAGTATCCATTTGAAAGTGCACGAAAAGCAAAGATTGAGTACTGTTTCTAAACCGCCACTTTTCTCTTGCTCTATTTGTAATTTAGGGTTCGATTTGCCGAAAGATTTGAGGGCGCATACCATACAAGCTCATCCGTTCTGA
Protein Sequence: MADSRLANFSSCCRLCLAEKPDSIRSIFDEAIDDRALAQKILASVSVEITPDDKLSTMVCAPCIEKINNCYSFKQTCSDNQNKLEQWLQLSNSDIELGNIQIKEEPIDQDQEPLPLEVVLNGGVPIKAEPLEVEYNELPPPLTPQGDEVEVVGHSPISHNDEDGYNPRKCPICDKLFSSSGNRKKHERIIHGMNPVGSTSESDMGSLSQDDRSQSSMESQPPTEVALDSREPNSEEEKILFAAGLKLLQRNSTPPISLESLSKIEHSYIEKCKAMCSMYTSLICACHNVQHPNLKGLLSHLRSLRIWFPVFTCYHCMVTLTDRSTSTRHHLRCSKTGLETLVKLSNLKKRSEVKTRLYQNYKCTKCRFMYSFHEDFCTHVDEEHSQIDMPTRCSCGRVFSTIEDYKDHAYVSCLVQFYCDICFVTVKTLDAFQKHAVEVHDQSEGFVLLQDDNYKQRRAMSLPGTTPAVTTAIKREHGEENIITGKRRSTFYKLRVTDVEDNVEGKAVGEKIAGTVCPVCSKEYSNNNNMWRHYQTHTRKEEGNSNEADYDDSLYCCPDCGGMFSTAEWEKHKGQHKKKSCNECGKVFQFQSELDQHRSVHLNLKVFRDSKTQSYRSTMASPSGETNIVVMCEICDTMFTTKEQLREHKLTHETMPTLESEPPDIKPKKFTCQICDKHYAGYGGLWDHNRKKHPENKSPFSKDFPKKCKYCEKFFYTGGSYFMHKQMHERTNQNLSSSQRKAIEDQATLQEEETNEDAESYHTCKRCFKVFANRYNLKNHMKCHGIMSPTTKTSLKNKGSKKVWCDICHSAFDSHSSLEQHKSEEHVEDDGMPNLSDEELDVKTPFVFTCDVCVQTFTTKVALKKHKEKHAQERVTSISNKRTLVYCKYCKISFENPDQLNQHMEEEHTESKHKSKPREKVKQYACNICRKAFSSAAAMYAHQGWHKRGKIFNNPVTEPLVTIKQEPDAEVEIFKCTTCKAILPNDTALQIHILEKHRNVNTFILPARCNTCNLDFTSQDEYEQHKRYHNMVEITRKTFPCVHCPAAFGRIETLNAHVRQFHKDHVKHEFKCAQCERVFDKQSSLSIHLKVHEKQRLSTVSKPPLFSCSICNLGFDLPKDLRAHTIQAHPF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01330001;
90% Identity: iTF_01330001;
80% Identity: -