Spec008388.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Schizotus pectinicornis
Gene Symbol
-
Assembly
GCA_951805265.1
Location
OX638205.1:8671583-8678201[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 1.2e-05 0.00084 19.8 1.8 1 23 140 162 140 162 0.99
2 16 0.00045 0.03 14.9 7.1 3 23 170 190 169 190 0.98
3 16 0.00014 0.0099 16.4 4.5 1 23 197 219 197 219 0.97
4 16 0.0011 0.075 13.7 1.5 1 23 289 311 289 311 0.99
5 16 1.5e-05 0.001 19.5 6.2 2 23 318 339 318 339 0.98
6 16 0.0019 0.13 12.9 6.4 2 23 356 378 355 378 0.95
7 16 9e-05 0.0061 17.1 4.0 1 23 451 473 451 473 0.97
8 16 0.00017 0.012 16.2 1.1 1 23 479 502 479 502 0.93
9 16 1.6e-06 0.00011 22.6 0.8 1 23 507 529 507 529 0.98
10 16 1.6e-07 1.1e-05 25.8 1.5 2 23 540 561 539 561 0.97
11 16 3.9e-08 2.7e-06 27.7 0.8 1 23 568 590 568 590 0.97
12 16 2.4e-05 0.0016 18.9 1.6 3 23 602 622 600 622 0.92
13 16 0.00032 0.022 15.3 4.1 1 23 628 650 628 650 0.99
14 16 1.7e-05 0.0012 19.3 4.0 1 23 656 678 656 678 0.98
15 16 6e-08 4.1e-06 27.1 0.2 1 23 684 706 684 706 0.99
16 16 0.00019 0.013 16.0 0.1 1 23 712 736 712 736 0.92

Sequence Information

Coding Sequence
ATGATCAACAAGCCGGACGAGTTGGTGATTGATAAAATATGTCGTTCCTGCATGTCTCAAAATGAGAACATGCGGAATGTTTTCGATTCCAAAGAACTGGATGGACAAACTCTGCAAATTGCTGATATGTTAATGTTCTGTGCTTCTGTAGCTgtTTCTACCGGTGACGGACTTCCAAGTTTGCTGTGTGGGAATTGCGAGAACAAACTGAACTTAGCCTATGAATTCAAGCAGCAGTGCCAGAAGTCCGATTCCACGCTGAGGGAATTGACGAATCAAGAGGATTCGGTGCACGGAATCAAAGAGGAATCTCTGGATATTGTGGTGCAGCCGGACTTCAACATTCCAACCCTGTTTCAGGACTCCGACAGTGACGAGGACGATGACGACAAGGACGGCAAGCGAAAAATGTCATCCTTCACGTGTCCGTTCTGTCAGAAAGTGTTACGGACGAAAAAGGGTTTGCGGATTCACCAACGTCGGCACACCGGCGACAAATTACGGGCTTGTCACTTGTGCAACGCGCAGTTCACCCGCACTCATCATTTGATTCGACACATGAAGACCCATGTTAAAACTGATGCTGGTCATGTTTGCACTGAATGTGGCAGGTCGTTTATGAAACTGTCTCATCTGTTATCTCACAAGAAAATGCATAAATCCGATTTGGGGGAGAAGGGCGACGAGGGAGAAAACGGCGAACAATCCACCGCCGTCGCCGATAACAACAGCGATAACGACGCGTCGGTCGATTTGAACGACGACGCCGACGATGGGGATGACGACGATGAAGATGATGAAGACGATTCCAGTCTCTTGGATTACTTCAAGAAAGTCAAAACAACGAAAAAGGATAAAGGGACTTACGAgtgtaaatattgttttaaaataatgacGACTTTTGTCGGGCTGAAAATCCACATGAGGAGGCACACCGGATCCGATTTAGCCAAATGTAAATTGTGCGAGAAAAGTTTTACTAAAACTAGCCATTTGAAGCGTCATTTGCAGACGCACGGCATCAAAGAAGTGGAAAAACCAAAGCCAATGGAGAAGAAAGTGATGGAATGCGAATTCTGCGACCGAAAATTCAAATACAAGAAGAGCTTCAACCATCACATGCATTCCGAACACGGGATGTCGGACGAAAGTGATGTTCCGTTGAGCGCTTACATCGCCAAGATGAACAACGAGAATAAAGACAAGACGAAAAAACCGGAGTCGGTTGAAGAGAcTGCAGCTGCCGCTCCCGAGAAAACTCCCGCGGAGACCGATCTTGCCGTGTCTGACAATGAAACAAAAGACAGTTTCAGTGACGCTCCCACACCGAAACCGAGCAACCACAAAGTGCACACGTGTCACGTTTGTCAAGCGGCTTTCGCCCGTGCCAACCACCTCACCCGTCACATGACTTTACACCGCGCCCTCCTGATACACAAATGCGACCGATGCGACAAAGCTTACGCGACGTTGGACCATCTGGCCAAACACGTCGAAGAGGACCACATAAATAAACCTTATGCGTGTACGATTTGCAATAAACCGTTCAGTAGAGGCGAACATCTGATCAGACATTTGAAAGTGCATCAGACTAGTACAGAGAAAGAAGACAATTTGACGTGTTCGATATGCGAGAAGACGTTCAGCAGATCGGACCATTTAGCCCGTCACATTAAGATACATTTGTTGCAAGACAAGAGACATGTTTGTCCGGATTGCGGAAAGGCGTTCAACCGTTTGGACAACTTGAAGACGCACACGAGGATACACACCGGCATCAAAGACACGACCAAACTGCACCTGTGCATCTATTGCGGGAAGGAATTCAACAACTCCAGCAATATGATAGTGCATATGCGACGGCACACCGGTGAGCGTCCTTACAAGTGCGCCCAATGCGGCAAGGGCTTTCCCCGATCCCACGACTTGAAATGCCACGAACGGACCCATTCAGGAGAGAAACCGTACCATTGTTCTCTATGCGGCAAATCGTTCAACAAAAGCAACAAATTGTTGAGACACACCAGAGTACACACAGGCGAACGTCCTTACGTTTGTAACATTTGCGGCCGGGCTTTTACCCAATCCAACGATCTGGCGTTGCACATGCGGAGGCACACGGGAGCGCGACCCTACGCTTGCGGCATGTGTCCGGCCCGTTTCATCCAATCAGGTCAGTTGAAGGCCCATCGTCGTTCTACCGGCCATTGGATGGAAACTCAGCCGGACCTCAAAGGGGGTCACCGCGTCGAGCCGGTCACTCCGGTAATAGAACCCGCACCGATACGATTCAAAACGCACGGGAAGCCGAAAAAGGAGGACGAAATCGAGGATGCGAAAAACGCGAAATTGCTAGCGCACGCCGTGGGGTTGATGAGTGGCATTAATATTCACGGACAGCCGATATTACTGGAGCCAAAAGCGATGGAATTGCAAAATTCGGGGTTGATCAATTTGGTCAGTAGTACCAGTGGGATCAAGTTTAAACCTGACGATCAGGCTTACTCGATTCCTTCCGTTAAAAGTGAAGAAGGTAAAGACGAAGGGGTTTCAACATCCTCGACATTCCAGAGAGACACCCCGACAGTAACTTACTCGCTTGTTGGTCCGACGTCCACGGCGTTTACAGCAACGGATTATAGCTACCAAAATTACGGTTAA
Protein Sequence
MINKPDELVIDKICRSCMSQNENMRNVFDSKELDGQTLQIADMLMFCASVAVSTGDGLPSLLCGNCENKLNLAYEFKQQCQKSDSTLRELTNQEDSVHGIKEESLDIVVQPDFNIPTLFQDSDSDEDDDDKDGKRKMSSFTCPFCQKVLRTKKGLRIHQRRHTGDKLRACHLCNAQFTRTHHLIRHMKTHVKTDAGHVCTECGRSFMKLSHLLSHKKMHKSDLGEKGDEGENGEQSTAVADNNSDNDASVDLNDDADDGDDDDEDDEDDSSLLDYFKKVKTTKKDKGTYECKYCFKIMTTFVGLKIHMRRHTGSDLAKCKLCEKSFTKTSHLKRHLQTHGIKEVEKPKPMEKKVMECEFCDRKFKYKKSFNHHMHSEHGMSDESDVPLSAYIAKMNNENKDKTKKPESVEETAAAAPEKTPAETDLAVSDNETKDSFSDAPTPKPSNHKVHTCHVCQAAFARANHLTRHMTLHRALLIHKCDRCDKAYATLDHLAKHVEEDHINKPYACTICNKPFSRGEHLIRHLKVHQTSTEKEDNLTCSICEKTFSRSDHLARHIKIHLLQDKRHVCPDCGKAFNRLDNLKTHTRIHTGIKDTTKLHLCIYCGKEFNNSSNMIVHMRRHTGERPYKCAQCGKGFPRSHDLKCHERTHSGEKPYHCSLCGKSFNKSNKLLRHTRVHTGERPYVCNICGRAFTQSNDLALHMRRHTGARPYACGMCPARFIQSGQLKAHRRSTGHWMETQPDLKGGHRVEPVTPVIEPAPIRFKTHGKPKKEDEIEDAKNAKLLAHAVGLMSGINIHGQPILLEPKAMELQNSGLINLVSSTSGIKFKPDDQAYSIPSVKSEEGKDEGVSTSSTFQRDTPTVTYSLVGPTSTAFTATDYSYQNYG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01329967; iTF_01283601;
90% Identity
iTF_01329967; iTF_01283601;
80% Identity
iTF_01329967;