Spec008388.1
Basic Information
- Insect
- Schizotus pectinicornis
- Gene Symbol
- -
- Assembly
- GCA_951805265.1
- Location
- OX638205.1:8671583-8678201[+]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.043 1.7e+02 2.5 0.5 14 38 137 158 130 163 0.76 2 13 0.02 80 3.5 8.2 18 41 169 189 158 193 0.86 3 13 0.00053 2.1 8.6 2.0 3 41 272 310 270 312 0.84 4 13 7.8e-05 0.31 11.2 5.0 11 41 312 338 304 339 0.83 5 13 0.00022 0.86 9.8 1.0 11 43 349 378 345 379 0.89 6 13 0.026 1e+02 3.2 2.8 12 39 446 470 437 489 0.80 7 13 0.00066 2.6 8.3 0.7 17 40 507 527 494 530 0.80 8 13 7.7e-05 0.3 11.3 2.9 11 42 533 569 528 571 0.69 9 13 0.025 97 3.2 1.2 6 38 557 586 554 591 0.83 10 13 4.4e-06 0.018 15.2 2.9 4 41 584 621 581 622 0.70 11 13 0.63 2.5e+03 -1.3 0.5 18 34 629 645 627 650 0.83 12 13 0.27 1.1e+03 -0.1 3.4 17 38 656 674 643 679 0.75 13 13 0.0046 18 5.6 1.1 17 41 684 705 669 706 0.73
Sequence Information
- Coding Sequence
- ATGATCAACAAGCCGGACGAGTTGGTGATTGATAAAATATGTCGTTCCTGCATGTCTCAAAATGAGAACATGCGGAATGTTTTCGATTCCAAAGAACTGGATGGACAAACTCTGCAAATTGCTGATATGTTAATGTTCTGTGCTTCTGTAGCTgtTTCTACCGGTGACGGACTTCCAAGTTTGCTGTGTGGGAATTGCGAGAACAAACTGAACTTAGCCTATGAATTCAAGCAGCAGTGCCAGAAGTCCGATTCCACGCTGAGGGAATTGACGAATCAAGAGGATTCGGTGCACGGAATCAAAGAGGAATCTCTGGATATTGTGGTGCAGCCGGACTTCAACATTCCAACCCTGTTTCAGGACTCCGACAGTGACGAGGACGATGACGACAAGGACGGCAAGCGAAAAATGTCATCCTTCACGTGTCCGTTCTGTCAGAAAGTGTTACGGACGAAAAAGGGTTTGCGGATTCACCAACGTCGGCACACCGGCGACAAATTACGGGCTTGTCACTTGTGCAACGCGCAGTTCACCCGCACTCATCATTTGATTCGACACATGAAGACCCATGTTAAAACTGATGCTGGTCATGTTTGCACTGAATGTGGCAGGTCGTTTATGAAACTGTCTCATCTGTTATCTCACAAGAAAATGCATAAATCCGATTTGGGGGAGAAGGGCGACGAGGGAGAAAACGGCGAACAATCCACCGCCGTCGCCGATAACAACAGCGATAACGACGCGTCGGTCGATTTGAACGACGACGCCGACGATGGGGATGACGACGATGAAGATGATGAAGACGATTCCAGTCTCTTGGATTACTTCAAGAAAGTCAAAACAACGAAAAAGGATAAAGGGACTTACGAgtgtaaatattgttttaaaataatgacGACTTTTGTCGGGCTGAAAATCCACATGAGGAGGCACACCGGATCCGATTTAGCCAAATGTAAATTGTGCGAGAAAAGTTTTACTAAAACTAGCCATTTGAAGCGTCATTTGCAGACGCACGGCATCAAAGAAGTGGAAAAACCAAAGCCAATGGAGAAGAAAGTGATGGAATGCGAATTCTGCGACCGAAAATTCAAATACAAGAAGAGCTTCAACCATCACATGCATTCCGAACACGGGATGTCGGACGAAAGTGATGTTCCGTTGAGCGCTTACATCGCCAAGATGAACAACGAGAATAAAGACAAGACGAAAAAACCGGAGTCGGTTGAAGAGAcTGCAGCTGCCGCTCCCGAGAAAACTCCCGCGGAGACCGATCTTGCCGTGTCTGACAATGAAACAAAAGACAGTTTCAGTGACGCTCCCACACCGAAACCGAGCAACCACAAAGTGCACACGTGTCACGTTTGTCAAGCGGCTTTCGCCCGTGCCAACCACCTCACCCGTCACATGACTTTACACCGCGCCCTCCTGATACACAAATGCGACCGATGCGACAAAGCTTACGCGACGTTGGACCATCTGGCCAAACACGTCGAAGAGGACCACATAAATAAACCTTATGCGTGTACGATTTGCAATAAACCGTTCAGTAGAGGCGAACATCTGATCAGACATTTGAAAGTGCATCAGACTAGTACAGAGAAAGAAGACAATTTGACGTGTTCGATATGCGAGAAGACGTTCAGCAGATCGGACCATTTAGCCCGTCACATTAAGATACATTTGTTGCAAGACAAGAGACATGTTTGTCCGGATTGCGGAAAGGCGTTCAACCGTTTGGACAACTTGAAGACGCACACGAGGATACACACCGGCATCAAAGACACGACCAAACTGCACCTGTGCATCTATTGCGGGAAGGAATTCAACAACTCCAGCAATATGATAGTGCATATGCGACGGCACACCGGTGAGCGTCCTTACAAGTGCGCCCAATGCGGCAAGGGCTTTCCCCGATCCCACGACTTGAAATGCCACGAACGGACCCATTCAGGAGAGAAACCGTACCATTGTTCTCTATGCGGCAAATCGTTCAACAAAAGCAACAAATTGTTGAGACACACCAGAGTACACACAGGCGAACGTCCTTACGTTTGTAACATTTGCGGCCGGGCTTTTACCCAATCCAACGATCTGGCGTTGCACATGCGGAGGCACACGGGAGCGCGACCCTACGCTTGCGGCATGTGTCCGGCCCGTTTCATCCAATCAGGTCAGTTGAAGGCCCATCGTCGTTCTACCGGCCATTGGATGGAAACTCAGCCGGACCTCAAAGGGGGTCACCGCGTCGAGCCGGTCACTCCGGTAATAGAACCCGCACCGATACGATTCAAAACGCACGGGAAGCCGAAAAAGGAGGACGAAATCGAGGATGCGAAAAACGCGAAATTGCTAGCGCACGCCGTGGGGTTGATGAGTGGCATTAATATTCACGGACAGCCGATATTACTGGAGCCAAAAGCGATGGAATTGCAAAATTCGGGGTTGATCAATTTGGTCAGTAGTACCAGTGGGATCAAGTTTAAACCTGACGATCAGGCTTACTCGATTCCTTCCGTTAAAAGTGAAGAAGGTAAAGACGAAGGGGTTTCAACATCCTCGACATTCCAGAGAGACACCCCGACAGTAACTTACTCGCTTGTTGGTCCGACGTCCACGGCGTTTACAGCAACGGATTATAGCTACCAAAATTACGGTTAA
- Protein Sequence
- MINKPDELVIDKICRSCMSQNENMRNVFDSKELDGQTLQIADMLMFCASVAVSTGDGLPSLLCGNCENKLNLAYEFKQQCQKSDSTLRELTNQEDSVHGIKEESLDIVVQPDFNIPTLFQDSDSDEDDDDKDGKRKMSSFTCPFCQKVLRTKKGLRIHQRRHTGDKLRACHLCNAQFTRTHHLIRHMKTHVKTDAGHVCTECGRSFMKLSHLLSHKKMHKSDLGEKGDEGENGEQSTAVADNNSDNDASVDLNDDADDGDDDDEDDEDDSSLLDYFKKVKTTKKDKGTYECKYCFKIMTTFVGLKIHMRRHTGSDLAKCKLCEKSFTKTSHLKRHLQTHGIKEVEKPKPMEKKVMECEFCDRKFKYKKSFNHHMHSEHGMSDESDVPLSAYIAKMNNENKDKTKKPESVEETAAAAPEKTPAETDLAVSDNETKDSFSDAPTPKPSNHKVHTCHVCQAAFARANHLTRHMTLHRALLIHKCDRCDKAYATLDHLAKHVEEDHINKPYACTICNKPFSRGEHLIRHLKVHQTSTEKEDNLTCSICEKTFSRSDHLARHIKIHLLQDKRHVCPDCGKAFNRLDNLKTHTRIHTGIKDTTKLHLCIYCGKEFNNSSNMIVHMRRHTGERPYKCAQCGKGFPRSHDLKCHERTHSGEKPYHCSLCGKSFNKSNKLLRHTRVHTGERPYVCNICGRAFTQSNDLALHMRRHTGARPYACGMCPARFIQSGQLKAHRRSTGHWMETQPDLKGGHRVEPVTPVIEPAPIRFKTHGKPKKEDEIEDAKNAKLLAHAVGLMSGINIHGQPILLEPKAMELQNSGLINLVSSTSGIKFKPDDQAYSIPSVKSEEGKDEGVSTSSTFQRDTPTVTYSLVGPTSTAFTATDYSYQNYG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01329983;
- 90% Identity
- iTF_01329983;
- 80% Identity
- iTF_01329983;