Spec017392.1
Basic Information
- Insect
- Schizotus pectinicornis
- Gene Symbol
- -
- Assembly
- GCA_951805265.1
- Location
- OX638210.1:9322411-9330257[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 9.1e-12 6.2e-09 35.6 0.2 1 37 15 51 15 57 0.93 2 2 6.2 4.2e+03 -2.3 0.0 12 22 134 145 128 145 0.57
Sequence Information
- Coding Sequence
- ATGGGGAAGAAATACGTGAGAACAACAACTAGAGCTAAATGGAGCGAGGAGGCATTAGAAGAGGCGATGGAGAAGATAGCTACCGGTCAAATGGGCACAAATGAAGCTAGCAGAGTGTATGGAATTGCTTCGCGTACCATCAGAAGGCATTTAGCAAAAGAAAATGCAAAGATACACCTTGGTCGCTGTCCAGAATTGGGGTTTGAACACGAAAAACGGCTTGTTAAACACGTAAAAGCTCTTGAAAAAGTGGGTTTCGCTCCAGATGCAACTGGATTGAAGAAAATGGCATTTGAATTTGcagaaaaacttcaaattgcTCACAGATTTTCAAGAGAACACCGATCTGCTGGCAACGATTGGTTCCGGGCATTCCTACGTCGCAATAAGGAGCTTTCAATACGCAAGTCAGAAGGTTTGTCTGTGGCCAGAGCCAAGGGTATGAACAGAACTgacgtagaaaattattttcaattgttgttggaaattttgtctGAGAATGATTTGCTTGATAAGCctggaaaaatatttaacgtaGACGAAACAGGAATTCAAGTGAATAATAAACCGGGCAGGGTAGTGGCCACAAAAGGTGCCAAAGATGTTTATTCAATAACCAGCACCGAAAGAGGTGAAAACATTTCTTTGATAGGCTGTTGCAATGCAGAAGGCTATTTCATGCCTCCTGTTTTGATATTCAaggagaaaaataagaaagaagaGTTCTCTGATGGACTTCCCCCTGGCTCAGACGTATTTATGAACCCCAAGTCTTCTTACATCAACAGTGAACTGTTCCTGAGGTGGttcaaaaatcattttttgccAAAGAAAGGTCAAGGAAAAGCTCTTCTGGTTCTGGACGGACATGCATCCCATTGTAATACAATTGAGTTGTTAGATCTGGCTTCAGAAAACGATGTGGTGTTGTTATGTTTACCCAGCCATACCACCCAGGCACTGCAACCACTTGATAGATCGTTCTTTGGTCCCTTAAAAACCTACTTTTTTCAAGAAGCCAAGAACTGGATGGTACAACACAAAAATAGGAAACTCTCCAGAACAGTAATTTCCACATTGATTGGGAATGCATGGATTAGAGGAGCAACTGTAGCTAATGCAGTTTCTGGCTTCCGGGCTTGTGGAATTTTTCCCTACAATCCGCAAGCTGTTCCTGATCATTTCTTCGCAATTTCTGATGCAGCAACAGCAGCGGCAAATGAAACACATCCACAAACCGAAATAAACTCACCCATAGCATCCACTTCTGAAAACCGGAATGTCCAAGGGACCTTATCAAGTAATGAGGAAGAAGAAACtccttcaaaatttcttctagAAAGTAATCCTGTTCCTCATATTCCCATGGACGCTCCAAAACGGAAACAGTTTGCGTTGGAGTTGACGTCTCCAATCAATCGCGTAAAGAGGCGTCTTCTCCAAGAGAAGAAAGATGAGCGCCAATTGAAAACTAGTTCTAAAATTTCCGGAAAACATCAAGCGAGCGAGAGTGTGGACACGGCCGCCTCCGCCGATCGAGGGGTGGGTGCGGACGAAATTCGCCGTCCGCCCGCCacacaccaccaccaccaccaccactgCCACATCATAAAAACGAAGAAGAAAATGTCGCCTCCGCCACCGCTGATGCCGCCGCTGCCGCAGAAAAGGGAACAACAAAAaccgacaacgacgacgactaCTACGAGGACGACAAGATCCAAGCCGGCGGCGTCACAAAAACCTTCAGCAACGCCTCCATAG
- Protein Sequence
- MGKKYVRTTTRAKWSEEALEEAMEKIATGQMGTNEASRVYGIASRTIRRHLAKENAKIHLGRCPELGFEHEKRLVKHVKALEKVGFAPDATGLKKMAFEFAEKLQIAHRFSREHRSAGNDWFRAFLRRNKELSIRKSEGLSVARAKGMNRTDVENYFQLLLEILSENDLLDKPGKIFNVDETGIQVNNKPGRVVATKGAKDVYSITSTERGENISLIGCCNAEGYFMPPVLIFKEKNKKEEFSDGLPPGSDVFMNPKSSYINSELFLRWFKNHFLPKKGQGKALLVLDGHASHCNTIELLDLASENDVVLLCLPSHTTQALQPLDRSFFGPLKTYFFQEAKNWMVQHKNRKLSRTVISTLIGNAWIRGATVANAVSGFRACGIFPYNPQAVPDHFFAISDAATAAANETHPQTEINSPIASTSENRNVQGTLSSNEEEETPSKFLLESNPVPHIPMDAPKRKQFALELTSPINRVKRRLLQEKKDERQLKTSSKISGKHQASESVDTAASADRGVGADEIRRPPATHHHHHHHCHIIKTKKKMSPPPPLMPPLPQKREQQKPTTTTTTTRTTRSKPAASQKPSATPP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01329715;
- 90% Identity
- iTF_01329713;
- 80% Identity
- -